Wall clock time and date at job start Tue Mar 31 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86796 * 120.00052 * 2 1 4 4 H 1.48502 * 109.47339 * 270.00010 * 3 2 1 5 5 H 1.48498 * 109.47470 * 30.00534 * 3 2 1 6 6 H 1.48507 * 109.47092 * 150.00455 * 3 2 1 7 7 C 1.38638 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99997 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.35671 * 116.99559 * 185.06373 * 9 7 2 11 11 C 1.38737 * 120.13934 * 354.40406 * 10 9 7 12 12 C 1.38125 * 120.05460 * 180.02562 * 11 10 9 13 13 C 1.38455 * 120.33424 * 359.69928 * 12 11 10 14 14 C 1.38007 * 120.27445 * 0.55571 * 13 12 11 15 15 C 1.39343 * 119.93811 * 359.47090 * 14 13 12 16 16 C 1.48177 * 120.16430 * 180.27741 * 15 14 13 17 17 C 1.39336 * 120.16067 * 65.00053 * 16 15 14 18 18 C 1.38184 * 119.92977 * 180.02562 * 17 16 15 19 19 F 1.35100 * 119.87947 * 179.97438 * 18 17 16 20 20 C 1.38629 * 120.24160 * 0.02562 * 18 17 16 21 21 C 1.38118 * 120.32268 * 359.95365 * 20 18 17 22 22 C 1.38810 * 120.06794 * 359.76990 * 21 20 18 23 23 S 1.76195 * 120.12534 * 180.27841 * 22 21 20 24 24 H 0.97000 * 119.99353 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.97424 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.83419 * 179.97438 * 12 11 10 27 27 H 1.07996 * 119.86307 * 180.29960 * 13 12 11 28 28 H 1.07991 * 120.03458 * 179.74504 * 14 13 12 29 29 H 1.08000 * 120.03560 * 359.97438 * 17 16 15 30 30 H 1.08004 * 119.83959 * 179.97438 * 20 18 17 31 31 H 1.07996 * 119.97090 * 180.02562 * 21 20 18 32 32 H 1.34495 * 103.00204 * 270.25134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0696 -3.5036 0.1056 11 6 3.4555 -3.4404 0.0912 12 6 4.2019 -4.5975 0.1989 13 6 3.5744 -5.8250 0.3279 14 6 2.1967 -5.9043 0.3385 15 6 1.4324 -4.7442 0.2302 16 6 -0.0471 -4.8230 0.2473 17 6 -0.7118 -5.2602 1.3912 18 6 -2.0917 -5.3323 1.4017 19 9 -2.7350 -5.7568 2.5113 20 6 -2.8183 -4.9717 0.2775 21 6 -2.1700 -4.5365 -0.8618 22 6 -0.7845 -4.4535 -0.8848 23 16 0.0437 -3.8916 -2.3349 24 1 -0.4849 0.8401 0.0004 25 1 3.9511 -2.4855 -0.0043 26 1 5.2805 -4.5442 0.1868 27 1 4.1655 -6.7244 0.4164 28 1 1.7113 -6.8641 0.4352 29 1 -0.1490 -5.5432 2.2685 30 1 -3.8966 -5.0309 0.2928 31 1 -2.7416 -4.2565 -1.7342 32 1 0.2474 -5.0271 -3.0263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:56 Heat of formation + Delta-G solvation = -11.847566 kcal Electronic energy + Delta-G solvation = -20192.872464 eV Core-core repulsion = 16932.255042 eV Total energy + Delta-G solvation = -3260.617422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.71101 -39.43238 -38.07225 -36.29893 -32.42919 -32.07484 -30.32476 -29.21443 -28.21665 -25.34223 -23.30273 -22.57229 -21.40818 -20.66525 -17.95230 -17.81281 -17.35304 -16.45250 -16.11239 -15.45606 -15.28670 -14.90836 -14.56056 -14.36827 -13.82096 -13.60184 -13.54544 -13.01761 -12.88112 -12.68372 -12.40909 -11.74561 -11.68048 -11.31875 -11.22314 -10.87331 -10.75719 -10.59291 -10.43914 -10.09357 -9.36326 -8.85779 -8.77126 -8.36142 -8.02843 -7.47403 -7.10112 -6.42552 -3.99593 1.12688 1.44579 2.12528 2.20868 2.39099 3.14825 3.15338 3.19603 3.28961 3.92052 3.98320 4.41121 4.56319 4.95040 5.09026 5.16745 5.22967 5.34001 5.59455 5.61902 5.76343 5.94031 6.04009 6.15248 6.22420 6.31026 6.39274 6.62095 6.66469 6.81073 7.02608 7.07137 7.19673 7.34577 7.38868 7.77047 8.00076 9.02108 9.71189 10.73734 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.007069 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.601485 B = 3959.885309 C = 4899.624173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.045 3.955 3 Si 0.936 3.064 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.150 6.150 10 C 0.190 3.810 11 C -0.235 4.235 12 C -0.063 4.063 13 C -0.222 4.222 14 C -0.056 4.056 15 C -0.153 4.153 16 C 0.071 3.929 17 C -0.156 4.156 18 C 0.119 3.881 19 F -0.142 7.142 20 C -0.173 4.173 21 C -0.042 4.042 22 C -0.098 4.098 23 S -0.074 6.074 24 H 0.269 0.731 25 H 0.130 0.870 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -8.827 -0.753 8.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.051 6.051 10 C 0.134 3.866 11 C -0.254 4.254 12 C -0.082 4.082 13 C -0.241 4.241 14 C -0.074 4.074 15 C -0.155 4.155 16 C 0.069 3.931 17 C -0.176 4.176 18 C 0.099 3.901 19 F -0.121 7.121 20 C -0.194 4.194 21 C -0.063 4.063 22 C -0.211 4.211 23 S 0.084 5.916 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -0.850 -8.080 -1.432 8.250 hybrid contribution 0.047 -0.380 0.646 0.750 sum -0.803 -8.459 -0.787 8.534 Atomic orbital electron populations 1.70055 1.05817 1.27556 1.44982 1.25224 0.95766 0.98623 0.96475 0.85787 0.78989 0.80393 0.78736 1.19848 1.20359 1.19254 1.21319 0.91788 0.80868 1.52762 0.89122 1.84002 1.33899 1.11051 1.76108 1.19084 0.89799 0.87208 0.90502 1.21101 0.93462 0.99126 1.11694 1.20824 0.98506 0.92364 0.96464 1.20437 0.93906 0.97065 1.12668 1.20607 0.93574 0.95545 0.97695 1.17593 0.89816 0.91973 1.16100 1.18769 0.92768 0.90663 0.90946 1.21194 0.92127 1.04864 0.99460 1.17667 0.90464 0.98804 0.83139 1.91475 1.81943 1.87496 1.51159 1.21015 1.00419 1.05147 0.92795 1.21328 0.92922 0.94339 0.97735 1.21434 0.95165 1.06822 0.97633 1.86742 1.77542 1.10339 1.16970 0.92076 0.85242 0.87463 0.87557 0.87260 0.84478 0.84717 0.84306 0.99721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.08 13.67 55.48 0.76 -23.32 16 2 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.46 9.49 30.88 0.29 -10.17 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.98 16 9 O -0.15 -3.99 8.05 0.34 0.00 -3.99 16 10 C 0.19 4.40 5.82 -38.73 -0.23 4.18 16 11 C -0.23 -4.92 9.16 -39.44 -0.36 -5.28 16 12 C -0.06 -1.12 10.03 -39.54 -0.40 -1.52 16 13 C -0.22 -3.74 10.03 -39.59 -0.40 -4.13 16 14 C -0.06 -0.99 9.73 -39.26 -0.38 -1.37 16 15 C -0.15 -3.14 4.62 -104.74 -0.48 -3.63 16 16 C 0.07 1.42 4.96 -104.72 -0.52 0.90 16 17 C -0.16 -2.78 9.71 -39.19 -0.38 -3.16 16 18 C 0.12 1.97 7.29 -39.46 -0.29 1.68 16 19 F -0.14 -2.26 17.26 2.25 0.04 -2.22 16 20 C -0.17 -2.66 10.01 -39.48 -0.40 -3.05 16 21 C -0.04 -0.70 9.78 -39.41 -0.39 -1.09 16 22 C -0.10 -1.91 5.90 -38.68 -0.23 -2.14 16 23 S -0.07 -1.48 23.16 -107.50 -2.49 -3.97 16 24 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.13 2.71 5.64 -52.48 -0.30 2.41 16 26 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.14 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.13 1.66 8.06 -52.48 -0.42 1.23 16 31 H 0.14 1.95 8.06 -52.49 -0.42 1.52 16 32 H 0.04 0.67 9.07 97.61 0.89 1.55 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -29.07 301.61 -7.77 -36.84 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -1.36 Total: 4.72 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -4.25 Total: -27.70 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.76 Total: -23.32 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.00 Total: -3.99 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.49 Total: -3.97 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.07 -7.77 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.990 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds