Wall clock time and date at job start Tue Mar 31 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86796 * 120.00052 * 2 1 4 4 H 1.48502 * 109.47339 * 270.00010 * 3 2 1 5 5 H 1.48498 * 109.47470 * 30.00534 * 3 2 1 6 6 H 1.48507 * 109.47092 * 150.00455 * 3 2 1 7 7 C 1.38638 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99997 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.35671 * 116.99559 * 185.06373 * 9 7 2 11 11 C 1.38737 * 120.13934 * 354.40406 * 10 9 7 12 12 C 1.38125 * 120.05460 * 180.02562 * 11 10 9 13 13 C 1.38455 * 120.33424 * 359.69928 * 12 11 10 14 14 C 1.38007 * 120.27445 * 0.55571 * 13 12 11 15 15 C 1.39343 * 119.93811 * 359.47090 * 14 13 12 16 16 C 1.48177 * 120.16430 * 180.27741 * 15 14 13 17 17 C 1.39336 * 120.16067 * 65.00053 * 16 15 14 18 18 C 1.38184 * 119.92977 * 180.02562 * 17 16 15 19 19 F 1.35100 * 119.87947 * 179.97438 * 18 17 16 20 20 C 1.38629 * 120.24160 * 0.02562 * 18 17 16 21 21 C 1.38118 * 120.32268 * 359.95365 * 20 18 17 22 22 C 1.38810 * 120.06794 * 359.76990 * 21 20 18 23 23 S 1.76195 * 120.12534 * 180.27841 * 22 21 20 24 24 H 0.97000 * 119.99353 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.97424 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.83419 * 179.97438 * 12 11 10 27 27 H 1.07996 * 119.86307 * 180.29960 * 13 12 11 28 28 H 1.07991 * 120.03458 * 179.74504 * 14 13 12 29 29 H 1.08000 * 120.03560 * 359.97438 * 17 16 15 30 30 H 1.08004 * 119.83959 * 179.97438 * 20 18 17 31 31 H 1.07996 * 119.97090 * 180.02562 * 21 20 18 32 32 H 1.34495 * 103.00204 * 270.25134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4473 2.6526 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0696 -3.5036 0.1056 11 6 3.4555 -3.4404 0.0912 12 6 4.2019 -4.5975 0.1989 13 6 3.5744 -5.8250 0.3279 14 6 2.1967 -5.9043 0.3385 15 6 1.4324 -4.7442 0.2302 16 6 -0.0471 -4.8230 0.2473 17 6 -0.7118 -5.2602 1.3912 18 6 -2.0917 -5.3323 1.4017 19 9 -2.7350 -5.7568 2.5113 20 6 -2.8183 -4.9717 0.2775 21 6 -2.1700 -4.5365 -0.8618 22 6 -0.7845 -4.4535 -0.8848 23 16 0.0437 -3.8916 -2.3349 24 1 -0.4849 0.8401 0.0004 25 1 3.9511 -2.4855 -0.0043 26 1 5.2805 -4.5442 0.1868 27 1 4.1655 -6.7244 0.4164 28 1 1.7113 -6.8641 0.4352 29 1 -0.1490 -5.5432 2.2685 30 1 -3.8966 -5.0309 0.2928 31 1 -2.7416 -4.2565 -1.7342 32 1 0.2474 -5.0271 -3.0263 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:56 Heat of formation + Delta-G solvation = -26.661798 kcal Electronic energy + Delta-G solvation = -20193.514857 eV Core-core repulsion = 16932.255042 eV Total energy + Delta-G solvation = -3261.259815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.00319 -40.97383 -39.53516 -37.90805 -34.20752 -33.60165 -31.68216 -30.72800 -29.71153 -27.22347 -24.70746 -23.95290 -23.00195 -22.12111 -19.70441 -19.30325 -18.84425 -18.01040 -17.46490 -16.84313 -16.63275 -16.44863 -16.18422 -15.98285 -15.38891 -15.15661 -14.94554 -14.43527 -14.36916 -14.22675 -13.86933 -13.47316 -13.09356 -12.93703 -12.62073 -12.45517 -12.29459 -12.10142 -12.02118 -11.56068 -11.09901 -10.70615 -10.17412 -9.75736 -9.48259 -9.07524 -8.70639 -8.34711 -5.98714 -0.25695 0.08796 0.63499 0.73863 0.86128 1.39714 1.47868 1.54413 1.86606 2.23586 2.53407 2.90488 3.12319 3.28752 3.55559 3.65871 3.85709 4.03973 4.23708 4.27466 4.33133 4.53588 4.70487 4.71886 4.83029 4.97950 5.04358 5.13026 5.18634 5.28303 5.34223 5.65278 5.72744 5.80660 5.81997 6.11825 6.27125 7.10042 7.91832 8.86080 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.007069 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.601485 B = 3959.885309 C = 4899.624173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.012 4.012 3 Si 1.004 2.996 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.408 4.408 8 H 0.097 0.903 9 O -0.191 6.191 10 C 0.159 3.841 11 C -0.253 4.253 12 C -0.062 4.062 13 C -0.200 4.200 14 C -0.059 4.059 15 C -0.156 4.156 16 C 0.044 3.956 17 C -0.163 4.163 18 C 0.117 3.883 19 F -0.136 7.136 20 C -0.160 4.160 21 C -0.045 4.045 22 C -0.115 4.115 23 S -0.117 6.117 24 H 0.268 0.732 25 H 0.120 0.880 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -10.771 -0.357 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.211 4.211 3 Si 0.825 3.175 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.114 0.886 9 O -0.095 6.095 10 C 0.106 3.894 11 C -0.273 4.273 12 C -0.080 4.080 13 C -0.218 4.218 14 C -0.077 4.077 15 C -0.158 4.158 16 C 0.041 3.959 17 C -0.183 4.183 18 C 0.098 3.902 19 F -0.115 7.115 20 C -0.180 4.180 21 C -0.066 4.066 22 C -0.227 4.227 23 S 0.041 5.959 24 H 0.077 0.923 25 H 0.138 0.862 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.164 0.836 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -0.064 -10.079 -1.034 10.132 hybrid contribution -0.115 -0.144 0.558 0.588 sum -0.179 -10.224 -0.476 10.236 Atomic orbital electron populations 1.70195 1.07555 1.28165 1.48297 1.26277 0.96629 1.01956 0.96228 0.84781 0.77967 0.75778 0.78968 1.19206 1.20081 1.17981 1.21711 0.92290 0.81767 1.52651 0.88604 1.83993 1.34712 1.11606 1.79176 1.19602 0.90865 0.87363 0.91525 1.21255 0.93120 1.00239 1.12655 1.21222 1.00228 0.91523 0.95042 1.20992 0.93861 0.98152 1.08800 1.21041 0.94185 0.95821 0.96695 1.17944 0.90797 0.91923 1.15086 1.18888 0.92747 0.92339 0.91879 1.21295 0.92981 1.04875 0.99175 1.17746 0.90198 0.98619 0.83684 1.91491 1.81689 1.87371 1.50926 1.21386 1.02169 1.02953 0.91495 1.21631 0.91989 0.93840 0.99138 1.21583 0.96349 1.07677 0.97092 1.86879 1.78377 1.12352 1.18275 0.92286 0.86218 0.83960 0.83385 0.84341 0.83565 0.81075 0.82043 0.97529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.76 13.67 21.61 0.30 -53.47 16 2 C -0.01 -0.66 5.49 84.83 0.47 -0.19 16 3 Si 1.00 42.50 29.55 68.60 2.03 44.53 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 7 C -0.41 -22.79 9.49 67.92 0.64 -22.14 16 8 H 0.10 4.99 5.21 -2.91 -0.02 4.97 16 9 O -0.19 -10.65 8.05 -21.68 -0.17 -10.83 16 10 C 0.16 7.52 5.82 22.82 0.13 7.65 16 11 C -0.25 -10.65 9.16 22.36 0.20 -10.44 16 12 C -0.06 -2.04 10.03 22.29 0.22 -1.82 16 13 C -0.20 -5.93 10.03 22.27 0.22 -5.71 16 14 C -0.06 -1.95 9.73 22.48 0.22 -1.73 16 15 C -0.16 -6.35 4.62 -19.94 -0.09 -6.45 16 16 C 0.04 1.75 4.96 -19.93 -0.10 1.65 16 17 C -0.16 -5.68 9.71 22.52 0.22 -5.46 16 18 C 0.12 3.69 7.29 22.35 0.16 3.85 16 19 F -0.14 -4.04 17.26 44.97 0.78 -3.27 16 20 C -0.16 -4.56 10.01 22.33 0.22 -4.33 16 21 C -0.05 -1.46 9.78 22.38 0.22 -1.24 16 22 C -0.11 -4.48 5.90 22.85 0.13 -4.35 16 23 S -0.12 -4.78 23.16 -56.49 -1.31 -6.08 16 24 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.12 5.14 5.64 -2.91 -0.02 5.12 16 26 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 27 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.14 3.71 8.06 -2.92 -0.02 3.69 16 29 H 0.15 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.06 2.10 9.07 73.35 0.67 2.77 16 Total: -1.00 -66.50 301.61 6.34 -60.15 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 1.84 Total: 19.67 kcal Atomic # 6 Polarization: -53.59 SS G_CDS: 2.88 Total: -50.71 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.30 Total: -53.47 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.17 Total: -10.83 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.31 Total: -6.08 kcal Total: -66.50 6.34 -60.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.493 kcal (2) G-P(sol) polarization free energy of solvation -66.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds