Wall clock time and date at job start Tue Mar 31 2020 06:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86793 * 120.00415 * 2 1 4 4 H 1.48501 * 109.46981 * 269.99596 * 3 2 1 5 5 H 1.48501 * 109.47288 * 29.99398 * 3 2 1 6 6 H 1.48503 * 109.47556 * 149.99955 * 3 2 1 7 7 C 1.38627 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00447 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.35702 * 116.99990 * 185.04777 * 9 7 2 11 11 C 1.39001 * 119.94414 * 354.45607 * 10 9 7 12 12 C 1.37838 * 120.05922 * 180.24588 * 11 10 9 13 13 C 1.39482 * 119.94075 * 359.49965 * 12 11 10 14 14 C 1.48235 * 120.05530 * 180.27041 * 13 12 11 15 15 C 1.39464 * 120.06043 * 310.20631 * 14 13 12 16 16 C 1.37790 * 119.98249 * 179.97438 * 15 14 13 17 17 C 1.39140 * 120.09751 * 359.97438 * 16 15 14 18 18 S 1.76205 * 119.94350 * 179.97438 * 17 16 15 19 19 C 1.39026 * 120.11171 * 0.02727 * 17 16 15 20 20 C 1.38064 * 120.02319 * 359.69328 * 19 17 16 21 21 F 1.35100 * 120.05292 * 180.30180 * 20 19 17 22 22 C 1.39474 * 119.88298 * 0.47904 * 13 12 11 23 23 C 1.37824 * 119.94905 * 359.76753 * 22 13 12 24 24 H 0.97003 * 119.99940 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.97496 * 359.97438 * 11 10 9 26 26 H 1.08004 * 120.02894 * 179.74148 * 12 11 10 27 27 H 1.08007 * 120.01060 * 359.95764 * 15 14 13 28 28 H 1.08007 * 119.95598 * 180.02562 * 16 15 14 29 29 H 1.34499 * 102.99497 * 90.00639 * 18 17 16 30 30 H 1.08001 * 119.98544 * 179.97438 * 19 17 16 31 31 H 1.08007 * 120.02411 * 179.79520 * 22 13 12 32 32 H 1.07997 * 119.97714 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4974 2.0462 -1.4001 5 1 1.4473 2.6527 0.6999 6 1 3.5474 1.4401 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3346 -2.3681 0.0005 10 6 2.0695 -3.5038 0.1075 11 6 3.4578 -3.4358 0.0944 12 6 4.2066 -4.5884 0.1977 13 6 3.5701 -5.8229 0.3260 14 6 4.3729 -7.0635 0.4434 15 6 5.3989 -7.3203 -0.4657 16 6 6.1445 -8.4737 -0.3548 17 6 5.8758 -9.3830 0.6635 18 16 6.8313 -10.8570 0.8012 19 6 4.8539 -9.1310 1.5719 20 6 4.1076 -7.9741 1.4687 21 9 3.1185 -7.7257 2.3548 22 6 2.1769 -5.8883 0.3393 23 6 1.4328 -4.7334 0.2306 24 1 -0.4850 0.8401 -0.0004 25 1 3.9503 -2.4794 -0.0013 26 1 5.2852 -4.5354 0.1833 27 1 5.6088 -6.6154 -1.2566 28 1 6.9392 -8.6719 -1.0588 29 1 7.8440 -10.4870 1.6052 30 1 4.6469 -9.8385 2.3613 31 1 1.6817 -6.8434 0.4353 32 1 0.3540 -4.7836 0.2404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:52 Heat of formation + Delta-G solvation = -20.644427 kcal Electronic energy + Delta-G solvation = -19169.838244 eV Core-core repulsion = 15908.839362 eV Total energy + Delta-G solvation = -3260.998882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.77163 -39.47186 -38.65053 -36.50319 -32.63173 -31.78892 -30.81057 -30.28781 -27.97796 -25.51731 -23.43370 -22.88957 -21.77139 -20.74284 -18.61393 -18.14315 -17.33247 -16.78739 -16.33033 -16.17808 -15.52409 -14.84186 -14.68251 -14.50159 -14.05511 -13.75649 -13.74610 -13.37015 -13.01911 -12.84729 -12.54921 -12.40406 -11.87297 -11.66697 -11.43419 -11.16345 -10.96180 -10.75972 -10.65468 -10.52203 -9.51500 -9.19280 -8.97935 -8.71741 -8.46013 -8.34680 -7.23579 -6.58508 -4.16008 0.56151 1.07576 1.40365 2.11520 2.11890 2.56003 3.05406 3.06666 3.11656 3.44234 3.86146 4.23057 4.40535 4.66664 4.78828 4.90643 4.97770 5.14478 5.15915 5.41204 5.51761 5.65999 5.81699 5.90511 6.03158 6.07614 6.11600 6.32060 6.53095 6.65067 6.75967 6.93103 7.10261 7.18661 7.29228 7.64532 7.86162 8.86411 9.53853 10.58642 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.003063 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.496480 B = 9139.314578 C = 9564.580429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.164 3.836 11 C -0.237 4.237 12 C -0.044 4.044 13 C -0.179 4.179 14 C -0.004 4.004 15 C -0.101 4.101 16 C -0.077 4.077 17 C -0.103 4.103 18 S -0.128 6.128 19 C -0.105 4.105 20 C 0.089 3.911 21 F -0.129 7.129 22 C -0.043 4.043 23 C -0.193 4.193 24 H 0.273 0.727 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.114 0.886 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.530 -14.712 0.522 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.070 6.070 10 C 0.108 3.892 11 C -0.256 4.256 12 C -0.062 4.062 13 C -0.180 4.180 14 C -0.005 4.005 15 C -0.121 4.121 16 C -0.098 4.098 17 C -0.215 4.215 18 S 0.029 5.971 19 C -0.126 4.126 20 C 0.068 3.932 21 F -0.108 7.108 22 C -0.062 4.062 23 C -0.212 4.212 24 H 0.083 0.917 25 H 0.149 0.851 26 H 0.129 0.871 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.039 0.961 30 H 0.160 0.840 31 H 0.132 0.868 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.388 -15.339 0.479 19.111 hybrid contribution 0.510 2.066 0.765 2.261 sum 11.898 -13.274 1.245 17.869 Atomic orbital electron populations 1.70044 1.06050 1.28036 1.44853 1.25346 0.95888 0.99028 0.96214 0.85673 0.78961 0.79763 0.78845 1.19720 1.20111 1.19064 1.21393 0.91960 0.80672 1.52884 0.88767 1.83960 1.34657 1.11628 1.76758 1.19495 0.90284 0.87973 0.91426 1.21082 0.93711 0.98882 1.11963 1.20726 0.98304 0.91106 0.96078 1.18016 0.92658 0.90922 1.16358 1.19148 0.95090 0.93635 0.92662 1.21229 0.94880 0.97222 0.98789 1.21523 0.99063 0.92615 0.96612 1.20865 1.01165 0.98839 1.00636 1.85980 1.29839 1.14562 1.66675 1.21424 0.95342 0.96018 0.99821 1.17714 0.89812 0.95504 0.90208 1.91527 1.58835 1.94199 1.66204 1.20637 0.92144 0.97054 0.96331 1.20137 0.99771 0.90023 1.11245 0.91749 0.85130 0.87149 0.84224 0.84468 0.96139 0.83994 0.86844 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.40 13.67 55.48 0.76 -23.64 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.79 29.55 -169.99 -5.02 14.77 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.39 -10.60 9.48 30.88 0.29 -10.31 16 8 H 0.09 2.33 5.19 -52.49 -0.27 2.06 16 9 O -0.17 -4.64 9.75 0.24 0.00 -4.64 16 10 C 0.16 3.82 6.65 -39.01 -0.26 3.56 16 11 C -0.24 -4.93 9.15 -39.45 -0.36 -5.29 16 12 C -0.04 -0.77 9.49 -39.26 -0.37 -1.15 16 13 C -0.18 -3.06 5.31 -104.86 -0.56 -3.62 16 14 C 0.00 -0.06 5.48 -104.79 -0.57 -0.64 16 15 C -0.10 -1.20 9.49 -39.29 -0.37 -1.58 16 16 C -0.08 -0.81 9.77 -39.41 -0.39 -1.19 16 17 C -0.10 -1.13 6.12 -38.95 -0.24 -1.37 16 18 S -0.13 -1.21 25.77 -107.50 -2.77 -3.98 16 19 C -0.10 -1.24 9.75 -39.35 -0.38 -1.62 16 20 C 0.09 1.25 7.16 -39.11 -0.28 0.97 16 21 F -0.13 -2.00 15.91 2.25 0.04 -1.97 16 22 C -0.04 -0.78 8.86 -39.27 -0.35 -1.13 16 23 C -0.19 -3.99 9.98 -39.45 -0.39 -4.38 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.13 2.68 5.62 -52.49 -0.30 2.39 16 26 H 0.11 1.63 8.03 -52.48 -0.42 1.21 16 27 H 0.14 1.47 8.03 -52.48 -0.42 1.05 16 28 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.07 0.64 9.07 97.61 0.89 1.53 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.82 7.80 -52.48 -0.41 1.41 16 32 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -28.87 304.39 -8.08 -36.94 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -1.34 Total: 4.69 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -4.33 Total: -26.76 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.76 Total: -23.64 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.00 Total: -4.64 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.77 Total: -3.98 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.87 -8.08 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.300 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds