Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86793 * 120.00415 * 2 1 4 4 H 1.48501 * 109.46981 * 269.99596 * 3 2 1 5 5 H 1.48501 * 109.47288 * 29.99398 * 3 2 1 6 6 H 1.48503 * 109.47556 * 149.99955 * 3 2 1 7 7 C 1.38627 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00447 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.35702 * 116.99990 * 185.04777 * 9 7 2 11 11 C 1.39001 * 119.94414 * 354.45607 * 10 9 7 12 12 C 1.37838 * 120.05922 * 180.24588 * 11 10 9 13 13 C 1.39482 * 119.94075 * 359.49965 * 12 11 10 14 14 C 1.48235 * 120.05530 * 180.27041 * 13 12 11 15 15 C 1.39464 * 120.06043 * 310.20631 * 14 13 12 16 16 C 1.37790 * 119.98249 * 179.97438 * 15 14 13 17 17 C 1.39140 * 120.09751 * 359.97438 * 16 15 14 18 18 S 1.76205 * 119.94350 * 179.97438 * 17 16 15 19 19 C 1.39026 * 120.11171 * 0.02727 * 17 16 15 20 20 C 1.38064 * 120.02319 * 359.69328 * 19 17 16 21 21 F 1.35100 * 120.05292 * 180.30180 * 20 19 17 22 22 C 1.39474 * 119.88298 * 0.47904 * 13 12 11 23 23 C 1.37824 * 119.94905 * 359.76753 * 22 13 12 24 24 H 0.97003 * 119.99940 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.97496 * 359.97438 * 11 10 9 26 26 H 1.08004 * 120.02894 * 179.74148 * 12 11 10 27 27 H 1.08007 * 120.01060 * 359.95764 * 15 14 13 28 28 H 1.08007 * 119.95598 * 180.02562 * 16 15 14 29 29 H 1.34499 * 102.99497 * 90.00639 * 18 17 16 30 30 H 1.08001 * 119.98544 * 179.97438 * 19 17 16 31 31 H 1.08007 * 120.02411 * 179.79520 * 22 13 12 32 32 H 1.07997 * 119.97714 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4974 2.0462 -1.4001 5 1 1.4473 2.6527 0.6999 6 1 3.5474 1.4401 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2007 0.0001 9 8 1.3346 -2.3681 0.0005 10 6 2.0695 -3.5038 0.1075 11 6 3.4578 -3.4358 0.0944 12 6 4.2066 -4.5884 0.1977 13 6 3.5701 -5.8229 0.3260 14 6 4.3729 -7.0635 0.4434 15 6 5.3989 -7.3203 -0.4657 16 6 6.1445 -8.4737 -0.3548 17 6 5.8758 -9.3830 0.6635 18 16 6.8313 -10.8570 0.8012 19 6 4.8539 -9.1310 1.5719 20 6 4.1076 -7.9741 1.4687 21 9 3.1185 -7.7257 2.3548 22 6 2.1769 -5.8883 0.3393 23 6 1.4328 -4.7334 0.2306 24 1 -0.4850 0.8401 -0.0004 25 1 3.9503 -2.4794 -0.0013 26 1 5.2852 -4.5354 0.1833 27 1 5.6088 -6.6154 -1.2566 28 1 6.9392 -8.6719 -1.0588 29 1 7.8440 -10.4870 1.6052 30 1 4.6469 -9.8385 2.3613 31 1 1.6817 -6.8434 0.4353 32 1 0.3540 -4.7836 0.2404 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -35.592550 kcal Electronic energy + Delta-G solvation = -19170.486443 eV Core-core repulsion = 15908.839362 eV Total energy + Delta-G solvation = -3261.647082 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.90879 -40.95179 -39.91978 -38.08532 -34.42673 -33.12263 -32.00658 -31.62631 -29.38662 -27.38321 -24.61120 -24.10747 -23.18345 -22.15977 -19.93803 -19.51319 -18.95778 -17.83227 -17.42930 -17.32325 -16.69403 -16.39370 -16.16612 -15.83835 -15.57911 -15.25278 -15.04543 -14.61475 -14.38590 -14.25714 -13.75108 -13.66440 -13.49736 -13.05607 -12.73909 -12.59357 -12.34581 -12.26560 -12.12907 -11.65654 -11.26083 -10.85765 -10.11906 -9.90665 -9.83454 -9.19613 -8.84273 -8.50568 -6.18589 -0.43728 0.13555 0.52008 0.53198 0.69433 1.35510 1.44413 1.53120 1.77630 2.15847 2.46693 2.77485 3.09386 3.25110 3.41472 3.58220 3.74000 4.02385 4.07237 4.12608 4.20895 4.44935 4.51804 4.64978 4.75923 4.95391 5.01505 5.07260 5.12184 5.20619 5.23977 5.45138 5.61641 5.63149 5.74560 5.98005 6.06629 6.93707 7.71472 8.72175 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.003063 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.496480 B = 9139.314578 C = 9564.580429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.415 4.415 8 H 0.107 0.893 9 O -0.225 6.225 10 C 0.126 3.874 11 C -0.241 4.241 12 C -0.041 4.041 13 C -0.149 4.149 14 C -0.033 4.033 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.099 4.099 18 S -0.118 6.118 19 C -0.104 4.104 20 C 0.075 3.925 21 F -0.144 7.144 22 C -0.045 4.045 23 C -0.203 4.203 24 H 0.274 0.726 25 H 0.129 0.871 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.168 0.832 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.135 0.865 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.304 -17.107 0.313 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.491 4.491 8 H 0.124 0.876 9 O -0.131 6.131 10 C 0.075 3.925 11 C -0.260 4.260 12 C -0.059 4.059 13 C -0.150 4.150 14 C -0.034 4.034 15 C -0.111 4.111 16 C -0.088 4.088 17 C -0.211 4.211 18 S 0.039 5.961 19 C -0.125 4.125 20 C 0.054 3.946 21 F -0.123 7.123 22 C -0.063 4.063 23 C -0.222 4.222 24 H 0.083 0.917 25 H 0.146 0.854 26 H 0.166 0.834 27 H 0.175 0.825 28 H 0.186 0.814 29 H 0.052 0.948 30 H 0.175 0.825 31 H 0.153 0.847 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.203 -17.804 0.272 23.413 hybrid contribution -0.399 2.225 0.868 2.421 sum 14.803 -15.579 1.141 21.521 Atomic orbital electron populations 1.70192 1.08121 1.28993 1.48292 1.26630 0.96839 1.02860 0.95616 0.84569 0.77843 0.74364 0.79349 1.18641 1.19747 1.17468 1.21886 0.92729 0.81212 1.53290 0.87604 1.83938 1.36136 1.12677 1.80322 1.19993 0.91679 0.87781 0.93052 1.21219 0.92848 1.00146 1.11764 1.21081 1.00026 0.89987 0.94813 1.18399 0.92530 0.92286 1.11801 1.19053 0.96660 0.92969 0.94721 1.21414 0.93468 0.98008 0.98194 1.21864 0.99025 0.91453 0.96503 1.21154 1.00609 0.99315 0.99986 1.86051 1.29849 1.13260 1.66919 1.21607 0.95029 0.95439 1.00406 1.17912 0.90065 0.96324 0.90263 1.91495 1.59599 1.94400 1.66784 1.20913 0.92938 0.96874 0.95571 1.20330 1.00075 0.90315 1.11494 0.91706 0.85365 0.83371 0.82548 0.81437 0.94850 0.82489 0.84705 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.67 21.61 0.30 -55.38 16 2 C -0.02 -1.19 5.49 84.82 0.47 -0.73 16 3 Si 1.02 41.76 29.55 68.60 2.03 43.79 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 7 C -0.42 -23.62 9.48 67.91 0.64 -22.97 16 8 H 0.11 5.44 5.19 -2.91 -0.02 5.43 16 9 O -0.22 -13.32 9.75 -22.07 -0.22 -13.54 16 10 C 0.13 6.19 6.65 22.64 0.15 6.34 16 11 C -0.24 -10.09 9.15 22.36 0.20 -9.88 16 12 C -0.04 -1.37 9.49 22.48 0.21 -1.16 16 13 C -0.15 -4.82 5.31 -20.02 -0.11 -4.93 16 14 C -0.03 -0.85 5.48 -19.98 -0.11 -0.96 16 15 C -0.09 -1.76 9.49 22.46 0.21 -1.55 16 16 C -0.07 -1.08 9.77 22.38 0.22 -0.86 16 17 C -0.10 -1.74 6.12 22.68 0.14 -1.60 16 18 S -0.12 -1.74 25.77 -56.49 -1.46 -3.20 16 19 C -0.10 -2.09 9.75 22.42 0.22 -1.87 16 20 C 0.08 1.92 7.16 22.58 0.16 2.08 16 21 F -0.14 -4.26 15.91 44.97 0.72 -3.54 16 22 C -0.04 -1.60 8.86 22.47 0.20 -1.40 16 23 C -0.20 -8.74 9.98 22.36 0.22 -8.51 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.13 5.35 5.62 -2.91 -0.02 5.34 16 26 H 0.15 3.80 8.03 -2.91 -0.02 3.78 16 27 H 0.16 2.51 8.03 -2.91 -0.02 2.49 16 28 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.09 1.11 9.07 73.35 0.67 1.78 16 30 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.14 4.18 7.80 -2.91 -0.02 4.16 16 32 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -67.60 304.39 6.05 -61.56 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.84 Total: 18.32 kcal Atomic # 6 Polarization: -50.85 SS G_CDS: 2.84 Total: -48.01 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.30 Total: -55.38 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.22 Total: -13.54 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.72 Total: -3.54 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -1.46 Total: -3.20 kcal Total: -67.60 6.05 -61.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.966 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds