Wall clock time and date at job start Tue Mar 31 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86799 * 120.00304 * 2 1 4 4 H 1.48506 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47093 * 119.99812 * 3 2 1 6 6 H 1.48492 * 109.47199 * 240.00285 * 3 2 1 7 7 C 1.40175 * 120.00073 * 180.27811 * 2 1 3 8 8 H 1.07998 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.40785 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.33973 * 120.29051 * 351.71993 * 9 7 2 11 11 C 1.31601 * 119.90241 * 179.97438 * 10 9 7 12 12 C 1.39198 * 120.50784 * 0.02562 * 11 10 9 13 13 N 1.31998 * 120.59354 * 359.97438 * 12 11 10 14 14 C 1.32881 * 120.07627 * 359.70072 * 13 12 11 15 15 C 1.47746 * 120.25530 * 180.28622 * 14 13 12 16 16 C 1.39717 * 120.16656 * 126.79375 * 15 14 13 17 17 C 1.37877 * 119.85970 * 179.76607 * 16 15 14 18 18 C 1.38462 * 120.18141 * 0.51000 * 17 16 15 19 19 C 1.38330 * 120.33277 * 359.74642 * 18 17 16 20 20 C 1.50693 * 119.92915 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47452 * 359.97436 * 20 19 18 22 22 C 1.38087 * 120.13761 * 359.97438 * 19 18 17 23 23 Cl 1.73599 * 120.09372 * 179.97438 * 22 19 18 24 24 H 0.96994 * 119.99943 * 359.72148 * 1 2 3 25 25 H 1.08001 * 119.74861 * 179.97438 * 11 10 9 26 26 H 1.08007 * 119.70436 * 179.97438 * 12 11 10 27 27 H 1.08000 * 120.06909 * 359.97438 * 16 15 14 28 28 H 1.07998 * 119.90726 * 180.23053 * 17 16 15 29 29 H 1.07999 * 119.83065 * 179.76438 * 18 17 16 30 30 H 1.09007 * 109.47322 * 119.97950 * 20 19 18 31 31 H 1.09003 * 109.47156 * 239.96941 * 20 19 18 32 32 H 0.96703 * 113.99840 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2759 2.7464 0.0006 5 1 3.0946 1.6963 1.2126 6 1 3.0946 1.6963 -1.2125 7 6 2.0077 -1.2139 -0.0059 8 1 3.0877 -1.2140 -0.0055 9 6 1.3038 -2.4331 -0.0113 10 7 -0.0254 -2.4467 0.1558 11 6 -0.6759 -3.5907 0.1490 12 6 0.0066 -4.7906 -0.0303 13 7 1.3160 -4.8003 -0.1966 14 6 1.9953 -3.6582 -0.2002 15 6 3.4602 -3.6640 -0.3924 16 6 4.0409 -2.8738 -1.3875 17 6 5.4091 -2.8803 -1.5582 18 6 6.2072 -3.6755 -0.7533 19 6 5.6400 -4.4650 0.2309 20 6 6.5172 -5.3266 1.1021 21 8 7.8834 -5.1556 0.7196 22 6 4.2718 -4.4644 0.4173 23 17 3.5611 -5.4561 1.6523 24 1 -0.4850 0.8400 0.0041 25 1 -1.7474 -3.5988 0.2843 26 1 -0.5401 -5.7220 -0.0332 27 1 3.4197 -2.2565 -2.0196 28 1 5.8591 -2.2669 -2.3248 29 1 7.2779 -3.6792 -0.8944 30 1 6.3926 -5.0346 2.1449 31 1 6.2342 -6.3723 0.9815 32 1 8.5062 -5.6820 1.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243702053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:05 Heat of formation + Delta-G solvation = 6.033251 kcal Electronic energy + Delta-G solvation = -20189.633881 eV Core-core repulsion = 16947.668085 eV Total energy + Delta-G solvation = -3241.965796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.44689 -38.44790 -36.52067 -35.75325 -34.17850 -32.58766 -31.57688 -30.78875 -28.82998 -26.25560 -25.66033 -23.47405 -22.04336 -21.33514 -20.23597 -17.70467 -17.38113 -16.53020 -16.08824 -15.30866 -15.02232 -14.93886 -14.51643 -14.32123 -13.96589 -13.49800 -12.93353 -12.76146 -12.48995 -12.27784 -11.77215 -11.56742 -11.42787 -11.20441 -10.96891 -10.80896 -10.66557 -10.42464 -10.21892 -10.04759 -9.85887 -9.56548 -9.19291 -8.36539 -8.13297 -7.69012 -7.40863 -6.62860 -4.78042 1.64753 1.70782 2.49683 2.80151 2.92699 2.96012 2.98513 3.15637 3.76225 4.16145 4.19994 4.55342 5.08787 5.29477 5.33868 5.51127 5.53870 5.68072 5.80905 5.91362 5.98752 6.08667 6.29766 6.36588 6.49654 6.67745 6.82713 6.85544 6.92675 6.99136 7.16308 7.36617 7.59638 7.60510 7.95007 8.28928 8.55658 9.17114 9.74545 9.99870 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.006968 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.838533 B = 4017.390837 C = 5315.433399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.403 4.403 8 H 0.095 0.905 9 C 0.226 3.774 10 N -0.453 5.453 11 C 0.090 3.910 12 C -0.116 4.116 13 N -0.396 5.396 14 C -0.037 4.037 15 C 0.043 3.957 16 C -0.090 4.090 17 C -0.124 4.124 18 C -0.105 4.105 19 C -0.096 4.096 20 C 0.123 3.877 21 O -0.569 6.569 22 C -0.023 4.023 23 Cl -0.068 7.068 24 H 0.280 0.720 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.106 -3.940 0.678 9.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.162 4.162 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.433 4.433 8 H 0.113 0.887 9 C 0.102 3.898 10 N -0.169 5.169 11 C -0.081 4.081 12 C -0.278 4.278 13 N -0.108 5.108 14 C -0.183 4.183 15 C 0.040 3.960 16 C -0.109 4.109 17 C -0.142 4.142 18 C -0.124 4.124 19 C -0.097 4.097 20 C 0.045 3.955 21 O -0.374 6.374 22 C -0.051 4.051 23 Cl -0.039 7.039 24 H 0.091 0.909 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.141 0.859 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.534 -3.437 0.365 9.207 hybrid contribution 0.229 0.182 0.610 0.676 sum 8.763 -3.254 0.975 9.398 Atomic orbital electron populations 1.70029 1.07475 1.28882 1.26031 1.26203 0.94980 1.01567 0.93404 0.86320 0.80218 0.79724 0.80497 1.19896 1.18483 1.18356 1.19737 0.95040 0.89045 1.39465 0.88659 1.19171 0.88903 0.92086 0.89659 1.69538 1.07440 1.24708 1.15233 1.23544 0.99924 0.90405 0.94259 1.22548 0.91071 0.97825 1.16379 1.67732 1.08139 1.29040 1.05850 1.19887 0.91673 0.90664 1.16087 1.18183 0.91444 0.93442 0.92894 1.21352 0.94528 0.98212 0.96859 1.21094 0.93578 0.99596 0.99951 1.20788 1.00076 0.96366 0.95132 1.19251 0.91072 1.00327 0.99023 1.20827 0.80683 0.97595 0.96352 1.86433 1.16613 1.71002 1.63356 1.20762 0.91246 0.98239 0.94821 1.98321 1.84533 1.68441 1.52579 0.90854 0.85257 0.85481 0.84749 0.85910 0.85100 0.92223 0.92231 0.77447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.65 11.52 55.56 0.64 -17.01 16 2 C 0.07 1.58 5.50 -17.31 -0.10 1.49 16 3 Si 0.91 17.56 29.56 -169.99 -5.03 12.53 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 5 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.40 -10.12 7.92 -37.89 -0.30 -10.42 16 8 H 0.10 2.27 5.80 -52.49 -0.30 1.97 16 9 C 0.23 5.96 6.53 -84.55 -0.55 5.41 16 10 N -0.45 -12.05 8.09 -10.72 -0.09 -12.13 16 11 C 0.09 2.11 11.22 -17.29 -0.19 1.92 16 12 C -0.12 -2.65 11.22 -17.12 -0.19 -2.84 16 13 N -0.40 -9.62 9.32 -8.97 -0.08 -9.70 16 14 C -0.04 -0.90 5.75 -82.11 -0.47 -1.38 16 15 C 0.04 0.93 4.99 -104.87 -0.52 0.41 16 16 C -0.09 -1.77 7.75 -39.16 -0.30 -2.07 16 17 C -0.12 -2.05 10.03 -39.63 -0.40 -2.45 16 18 C -0.11 -1.72 9.38 -39.46 -0.37 -2.09 16 19 C -0.10 -1.65 5.88 -104.65 -0.62 -2.27 16 20 C 0.12 1.68 6.40 36.00 0.23 1.91 16 21 O -0.57 -6.78 12.13 -35.23 -0.43 -7.21 16 22 C -0.02 -0.46 6.34 -39.05 -0.25 -0.71 16 23 Cl -0.07 -1.31 26.23 -51.86 -1.36 -2.67 16 24 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 25 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 26 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 27 H 0.13 2.65 7.58 -52.49 -0.40 2.25 16 28 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.13 1.92 6.99 -52.49 -0.37 1.56 16 30 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.38 2.51 9.12 45.56 0.42 2.93 16 LS Contribution 295.31 15.07 4.45 4.45 Total: -1.00 -30.00 295.31 -7.83 -37.82 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -1.90 Total: 7.01 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -4.03 Total: -13.09 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.47 Total: -38.84 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.43 Total: -7.21 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.36 Total: -2.67 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.00 -7.83 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243702053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.858 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds