Wall clock time and date at job start Tue Mar 31 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86799 * 120.00304 * 2 1 4 4 H 1.48506 * 109.46889 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47093 * 119.99812 * 3 2 1 6 6 H 1.48492 * 109.47199 * 240.00285 * 3 2 1 7 7 C 1.40175 * 120.00073 * 180.27811 * 2 1 3 8 8 H 1.07998 * 120.00309 * 180.02562 * 7 2 1 9 9 C 1.40785 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.33973 * 120.29051 * 351.71993 * 9 7 2 11 11 C 1.31601 * 119.90241 * 179.97438 * 10 9 7 12 12 C 1.39198 * 120.50784 * 0.02562 * 11 10 9 13 13 N 1.31998 * 120.59354 * 359.97438 * 12 11 10 14 14 C 1.32881 * 120.07627 * 359.70072 * 13 12 11 15 15 C 1.47746 * 120.25530 * 180.28622 * 14 13 12 16 16 C 1.39717 * 120.16656 * 126.79375 * 15 14 13 17 17 C 1.37877 * 119.85970 * 179.76607 * 16 15 14 18 18 C 1.38462 * 120.18141 * 0.51000 * 17 16 15 19 19 C 1.38330 * 120.33277 * 359.74642 * 18 17 16 20 20 C 1.50693 * 119.92915 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47452 * 359.97436 * 20 19 18 22 22 C 1.38087 * 120.13761 * 359.97438 * 19 18 17 23 23 Cl 1.73599 * 120.09372 * 179.97438 * 22 19 18 24 24 H 0.96994 * 119.99943 * 359.72148 * 1 2 3 25 25 H 1.08001 * 119.74861 * 179.97438 * 11 10 9 26 26 H 1.08007 * 119.70436 * 179.97438 * 12 11 10 27 27 H 1.08000 * 120.06909 * 359.97438 * 16 15 14 28 28 H 1.07998 * 119.90726 * 180.23053 * 17 16 15 29 29 H 1.07999 * 119.83065 * 179.76438 * 18 17 16 30 30 H 1.09007 * 109.47322 * 119.97950 * 20 19 18 31 31 H 1.09003 * 109.47156 * 239.96941 * 20 19 18 32 32 H 0.96703 * 113.99840 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2759 2.7464 0.0006 5 1 3.0946 1.6963 1.2126 6 1 3.0946 1.6963 -1.2125 7 6 2.0077 -1.2139 -0.0059 8 1 3.0877 -1.2140 -0.0055 9 6 1.3038 -2.4331 -0.0113 10 7 -0.0254 -2.4467 0.1558 11 6 -0.6759 -3.5907 0.1490 12 6 0.0066 -4.7906 -0.0303 13 7 1.3160 -4.8003 -0.1966 14 6 1.9953 -3.6582 -0.2002 15 6 3.4602 -3.6640 -0.3924 16 6 4.0409 -2.8738 -1.3875 17 6 5.4091 -2.8803 -1.5582 18 6 6.2072 -3.6755 -0.7533 19 6 5.6400 -4.4650 0.2309 20 6 6.5172 -5.3266 1.1021 21 8 7.8834 -5.1556 0.7196 22 6 4.2718 -4.4644 0.4173 23 17 3.5611 -5.4561 1.6523 24 1 -0.4850 0.8400 0.0041 25 1 -1.7474 -3.5988 0.2843 26 1 -0.5401 -5.7220 -0.0332 27 1 3.4197 -2.2565 -2.0196 28 1 5.8591 -2.2669 -2.3248 29 1 7.2779 -3.6792 -0.8944 30 1 6.3926 -5.0346 2.1449 31 1 6.2342 -6.3723 0.9815 32 1 8.5062 -5.6820 1.2394 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243702053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:04 Heat of formation + Delta-G solvation = -13.799406 kcal Electronic energy + Delta-G solvation = -20190.493889 eV Core-core repulsion = 16947.668085 eV Total energy + Delta-G solvation = -3242.825805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09582 -39.96502 -37.56437 -37.22483 -35.98025 -34.28057 -33.23223 -32.20239 -30.46857 -28.02285 -26.90840 -25.13643 -23.84896 -22.77747 -21.73137 -19.53895 -18.41269 -18.01582 -17.79220 -16.87013 -16.69967 -16.04711 -15.94825 -15.88811 -15.40573 -14.84438 -14.61181 -14.42620 -13.93529 -13.79497 -13.31023 -13.08681 -12.98429 -12.76304 -12.45496 -12.24640 -12.10835 -11.98526 -11.64455 -11.52852 -11.41010 -11.21227 -10.98911 -10.00858 -9.51191 -9.46272 -9.14272 -8.41528 -6.64197 0.12050 0.30764 0.75868 1.18384 1.33012 1.38409 1.50824 1.53944 2.16214 2.71630 2.78385 3.20007 3.70070 3.80920 3.91879 4.16833 4.18569 4.32446 4.42746 4.43772 4.51601 4.60787 4.71468 4.78908 4.94742 5.08456 5.13674 5.20405 5.47110 5.50127 5.63167 5.80872 5.97623 6.10911 6.46830 6.71210 6.92741 7.33516 7.89821 8.25908 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.006968 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.838533 B = 4017.390837 C = 5315.433399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.025 3.975 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.248 1.248 7 C -0.423 4.423 8 H 0.100 0.900 9 C 0.195 3.805 10 N -0.488 5.488 11 C 0.077 3.923 12 C -0.120 4.120 13 N -0.411 5.411 14 C -0.040 4.040 15 C 0.007 3.993 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.097 4.097 19 C -0.098 4.098 20 C 0.129 3.871 21 O -0.576 6.576 22 C -0.038 4.038 23 Cl -0.072 7.072 24 H 0.287 0.713 25 H 0.158 0.842 26 H 0.158 0.842 27 H 0.123 0.877 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.520 -3.673 0.484 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.172 1.172 7 C -0.454 4.454 8 H 0.118 0.882 9 C 0.070 3.930 10 N -0.205 5.205 11 C -0.093 4.093 12 C -0.282 4.282 13 N -0.123 5.123 14 C -0.187 4.187 15 C 0.005 3.995 16 C -0.123 4.123 17 C -0.129 4.129 18 C -0.116 4.116 19 C -0.099 4.099 20 C 0.052 3.948 21 O -0.385 6.385 22 C -0.066 4.066 23 Cl -0.043 7.043 24 H 0.098 0.902 25 H 0.175 0.825 26 H 0.175 0.825 27 H 0.141 0.859 28 H 0.176 0.824 29 H 0.174 0.826 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.952 -3.215 0.178 11.416 hybrid contribution -0.456 -0.026 0.658 0.801 sum 10.497 -3.241 0.836 11.017 Atomic orbital electron populations 1.70108 1.09091 1.30184 1.26887 1.27102 0.95707 1.04746 0.92357 0.85249 0.78912 0.75091 0.80703 1.18943 1.18356 1.17176 1.19998 0.95405 0.89619 1.40346 0.88189 1.19618 0.89336 0.93428 0.90582 1.69485 1.08086 1.26284 1.16676 1.24017 1.01288 0.90061 0.93892 1.23058 0.91006 0.98912 1.15187 1.67815 1.08782 1.29142 1.06592 1.20264 0.93273 0.90183 1.14966 1.18297 0.90382 0.95783 0.95028 1.21350 0.95933 0.98294 0.96763 1.21446 0.92132 0.99161 1.00172 1.21151 1.01217 0.95142 0.94056 1.19683 0.90466 1.00354 0.99358 1.20698 0.81229 0.97177 0.95735 1.86353 1.16030 1.71897 1.64189 1.20891 0.92305 0.98454 0.94960 1.98306 1.84840 1.68498 1.52698 0.90228 0.82487 0.82482 0.85928 0.82351 0.82584 0.91511 0.91337 0.74562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.05 11.52 21.86 0.25 -37.79 16 2 C 0.03 1.21 5.50 85.33 0.47 1.68 16 3 Si 0.98 35.78 29.56 68.60 2.03 37.81 16 4 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.25 -8.52 7.11 99.48 0.71 -7.81 16 7 C -0.42 -21.83 7.92 23.36 0.19 -21.65 16 8 H 0.10 4.87 5.80 -2.91 -0.02 4.85 16 9 C 0.19 10.62 6.53 40.36 0.26 10.89 16 10 N -0.49 -26.80 8.09 -187.84 -1.52 -28.32 16 11 C 0.08 3.69 11.22 84.96 0.95 4.64 16 12 C -0.12 -5.53 11.22 84.90 0.95 -4.58 16 13 N -0.41 -20.34 9.32 -182.31 -1.70 -22.03 16 14 C -0.04 -2.04 5.75 42.42 0.24 -1.80 16 15 C 0.01 0.32 4.99 -20.03 -0.10 0.22 16 16 C -0.10 -4.05 7.75 22.54 0.17 -3.88 16 17 C -0.11 -3.41 10.03 22.24 0.22 -3.19 16 18 C -0.10 -2.89 9.38 22.35 0.21 -2.68 16 19 C -0.10 -3.18 5.88 -19.88 -0.12 -3.29 16 20 C 0.13 3.18 6.40 71.23 0.46 3.63 16 21 O -0.58 -11.55 12.13 -148.98 -1.81 -13.35 16 22 C -0.04 -1.52 6.34 22.62 0.14 -1.38 16 23 Cl -0.07 -2.79 26.23 -2.72 -0.07 -2.86 16 24 H 0.29 13.20 8.29 -92.71 -0.77 12.44 16 25 H 0.16 6.31 8.06 -2.91 -0.02 6.28 16 26 H 0.16 6.05 8.06 -2.91 -0.02 6.03 16 27 H 0.12 4.95 7.58 -2.91 -0.02 4.93 16 28 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.16 3.89 6.99 -2.91 -0.02 3.87 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.40 3.76 9.12 -74.06 -0.68 3.09 16 Total: -1.00 -66.34 295.31 1.75 -64.59 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.51 Total: 23.34 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.06 Total: -21.37 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -2.97 Total: -88.15 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.81 Total: -13.35 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Atomic # 17 Polarization: -2.79 SS G_CDS: -0.07 Total: -2.86 kcal Total: -66.34 1.75 -64.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243702053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.793 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds