Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86806 * 120.00054 * 2 1 4 4 H 1.48496 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47058 * 300.00409 * 3 2 1 6 6 H 1.48498 * 109.46999 * 60.00399 * 3 2 1 7 7 C 1.40136 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.41071 * 119.99964 * 359.97438 * 7 2 1 10 10 N 1.33655 * 119.13211 * 180.02562 * 9 7 2 11 11 C 1.31584 * 120.83104 * 179.97438 * 10 9 7 12 12 C 1.40445 * 119.09148 * 359.97438 * 11 10 9 13 13 C 1.47898 * 120.79001 * 179.97438 * 12 11 10 14 14 C 1.39684 * 120.15584 * 309.99971 * 13 12 11 15 15 C 1.37886 * 119.85846 * 180.02562 * 14 13 12 16 16 C 1.38457 * 120.18265 * 359.97438 * 15 14 13 17 17 C 1.38338 * 120.31791 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.93160 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46878 * 0.02562 * 18 17 16 20 20 C 1.38083 * 120.13554 * 0.28005 * 17 16 15 21 21 Cl 1.73604 * 120.08954 * 179.70302 * 20 17 16 22 22 C 1.40442 * 118.41609 * 0.25234 * 12 11 10 23 23 N 1.31580 * 119.09378 * 359.50975 * 22 12 11 24 24 H 0.97002 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.45184 * 180.02562 * 11 10 9 26 26 H 1.07991 * 120.06571 * 0.02562 * 14 13 12 27 27 H 1.07994 * 119.90490 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.83822 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47060 * 120.00429 * 18 17 16 30 30 H 1.09001 * 109.47380 * 240.00516 * 18 17 16 31 31 H 0.96700 * 113.99509 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.45308 * 179.73022 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0073 -1.2136 -0.0005 8 1 3.0874 -1.2136 -0.0010 9 6 1.3020 -2.4353 -0.0005 10 7 1.9877 -3.5826 -0.0005 11 6 1.3638 -4.7411 0.0000 12 6 -0.0405 -4.7605 0.0011 13 6 -0.7800 -6.0413 0.0011 14 6 -0.4592 -7.0368 -0.9248 15 6 -1.1530 -8.2284 -0.9197 16 6 -2.1655 -8.4404 0.0007 17 6 -2.4893 -7.4596 0.9210 18 6 -3.5925 -7.6999 1.9191 19 8 -4.1447 -9.0019 1.7145 20 6 -1.8073 -6.2590 0.9234 21 17 -2.2198 -5.0261 2.0739 22 6 -0.7258 -3.5346 -0.0039 23 7 -0.0344 -2.4151 0.0005 24 1 -0.4850 0.8401 0.0004 25 1 1.9241 -5.6645 0.0004 26 1 0.3304 -6.8734 -1.6431 27 1 -0.9059 -8.9984 -1.6354 28 1 -2.7055 -9.3757 -0.0005 29 1 -3.1895 -7.6311 2.9296 30 1 -4.3719 -6.9495 1.7869 31 1 -4.8616 -9.2252 2.3238 32 1 -1.8055 -3.5111 -0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243708028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = 8.586451 kcal Electronic energy + Delta-G solvation = -19595.539708 eV Core-core repulsion = 16353.684627 eV Total energy + Delta-G solvation = -3241.855081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50050 -38.55715 -36.68807 -35.99424 -34.02560 -32.26557 -31.84747 -31.08947 -29.01270 -26.14304 -25.98068 -22.88105 -22.74301 -21.38687 -20.33010 -17.94978 -17.53021 -16.62854 -16.12281 -15.26305 -15.12320 -15.07806 -14.73039 -14.44058 -13.79218 -13.58341 -12.98215 -12.83693 -12.64819 -12.30157 -12.09306 -11.50410 -11.37843 -11.36764 -11.10064 -11.06168 -10.81947 -10.40144 -10.33490 -10.32179 -9.63096 -9.20040 -9.16276 -8.75580 -8.38470 -7.68089 -7.31440 -6.65008 -4.82900 1.43348 1.48126 2.53539 2.58793 2.95331 2.99284 3.03802 3.05487 3.78863 3.94323 4.05789 4.54379 4.90994 5.17072 5.29322 5.36332 5.39629 5.62127 5.70352 5.75828 5.84906 5.88901 6.01651 6.22903 6.34375 6.56462 6.58523 6.70979 6.86499 6.97733 7.13412 7.25225 7.47389 7.56355 8.04784 8.38166 8.45701 9.01693 9.98891 10.18109 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.004141 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.351622 B = 6760.687174 C = 7391.139544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.698 5.698 2 C 0.062 3.938 3 Si 0.920 3.080 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.382 4.382 8 H 0.096 0.904 9 C 0.383 3.617 10 N -0.594 5.594 11 C 0.192 3.808 12 C -0.338 4.338 13 C 0.040 3.960 14 C -0.119 4.119 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.083 4.083 18 C 0.119 3.881 19 O -0.569 6.569 20 C -0.045 4.045 21 Cl -0.067 7.067 22 C 0.195 3.805 23 N -0.508 5.508 24 H 0.278 0.722 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.380 0.620 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 -10.677 1.984 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.167 4.167 3 Si 0.743 3.257 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.415 4.415 8 H 0.114 0.886 9 C 0.151 3.849 10 N -0.313 5.313 11 C 0.017 3.983 12 C -0.348 4.348 13 C 0.038 3.962 14 C -0.138 4.138 15 C -0.131 4.131 16 C -0.133 4.133 17 C -0.084 4.084 18 C 0.042 3.958 19 O -0.375 6.375 20 C -0.072 4.072 21 Cl -0.038 7.038 22 C 0.018 3.982 23 N -0.224 5.224 24 H 0.089 0.911 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.227 0.773 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.995 -9.360 1.620 11.233 hybrid contribution -0.729 -0.089 0.569 0.929 sum -6.725 -9.450 2.189 11.803 Atomic orbital electron populations 1.70140 1.07437 1.28477 1.25752 1.26210 0.95089 1.01690 0.93671 0.86051 0.80877 0.79947 0.78784 1.17982 1.19515 1.19526 1.19500 0.95062 0.87826 1.39120 0.88603 1.19961 0.85984 0.90825 0.88178 1.68656 1.40572 0.98417 1.23638 1.22582 0.89973 0.95848 0.89883 1.19586 0.95260 0.92470 1.27505 1.18531 0.92170 0.93802 0.91740 1.21309 1.00764 0.93108 0.98591 1.21117 0.96116 0.97187 0.98727 1.20786 0.98226 0.99076 0.95239 1.19311 0.97541 0.93094 0.98407 1.20868 0.93854 0.84411 0.96646 1.86425 1.55590 1.33747 1.61717 1.20837 1.00406 0.90303 0.95660 1.98352 1.92639 1.54019 1.58797 1.23004 0.98898 0.87569 0.88681 1.69369 1.08007 1.26470 1.18505 0.91088 0.85315 0.85523 0.86021 0.85046 0.92058 0.91998 0.77259 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.90 11.40 55.56 0.63 -17.26 16 2 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 3 Si 0.92 17.94 29.56 -169.99 -5.02 12.92 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.38 -10.21 9.35 -37.80 -0.35 -10.57 16 8 H 0.10 2.46 7.85 -52.49 -0.41 2.05 16 9 C 0.38 10.65 7.35 -158.16 -1.16 9.49 16 10 N -0.59 -15.53 10.34 -12.41 -0.13 -15.66 16 11 C 0.19 4.36 10.85 -16.83 -0.18 4.17 16 12 C -0.34 -7.38 5.15 -104.28 -0.54 -7.92 16 13 C 0.04 0.74 5.52 -104.83 -0.58 0.16 16 14 C -0.12 -1.90 9.56 -39.17 -0.37 -2.27 16 15 C -0.11 -1.56 10.03 -39.63 -0.40 -1.96 16 16 C -0.11 -1.63 9.38 -39.46 -0.37 -2.00 16 17 C -0.08 -1.24 5.88 -104.64 -0.62 -1.86 16 18 C 0.12 1.43 6.40 36.01 0.23 1.66 16 19 O -0.57 -6.00 12.13 -35.23 -0.43 -6.43 16 20 C -0.04 -0.77 6.30 -39.07 -0.25 -1.02 16 21 Cl -0.07 -1.17 25.08 -51.86 -1.30 -2.47 16 22 C 0.20 4.69 9.50 -16.83 -0.16 4.53 16 23 N -0.51 -13.86 7.83 -12.41 -0.10 -13.96 16 24 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 25 H 0.13 2.50 8.06 -52.49 -0.42 2.08 16 26 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.13 1.70 6.99 -52.49 -0.37 1.33 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.38 2.07 9.12 45.56 0.42 2.48 16 32 H 0.13 2.85 7.23 -52.49 -0.38 2.47 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -30.52 298.35 -8.68 -39.20 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -1.99 Total: 5.30 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.84 Total: -6.15 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.41 Total: -46.88 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.43 Total: -6.43 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.30 Total: -2.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.52 -8.68 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243708028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.791 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds