Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86806 * 120.00054 * 2 1 4 4 H 1.48496 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47058 * 300.00409 * 3 2 1 6 6 H 1.48498 * 109.46999 * 60.00399 * 3 2 1 7 7 C 1.40136 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.41071 * 119.99964 * 359.97438 * 7 2 1 10 10 N 1.33655 * 119.13211 * 180.02562 * 9 7 2 11 11 C 1.31584 * 120.83104 * 179.97438 * 10 9 7 12 12 C 1.40445 * 119.09148 * 359.97438 * 11 10 9 13 13 C 1.47898 * 120.79001 * 179.97438 * 12 11 10 14 14 C 1.39684 * 120.15584 * 309.99971 * 13 12 11 15 15 C 1.37886 * 119.85846 * 180.02562 * 14 13 12 16 16 C 1.38457 * 120.18265 * 359.97438 * 15 14 13 17 17 C 1.38338 * 120.31791 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.93160 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46878 * 0.02562 * 18 17 16 20 20 C 1.38083 * 120.13554 * 0.28005 * 17 16 15 21 21 Cl 1.73604 * 120.08954 * 179.70302 * 20 17 16 22 22 C 1.40442 * 118.41609 * 0.25234 * 12 11 10 23 23 N 1.31580 * 119.09378 * 359.50975 * 22 12 11 24 24 H 0.97002 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.45184 * 180.02562 * 11 10 9 26 26 H 1.07991 * 120.06571 * 0.02562 * 14 13 12 27 27 H 1.07994 * 119.90490 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.83822 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.47060 * 120.00429 * 18 17 16 30 30 H 1.09001 * 109.47380 * 240.00516 * 18 17 16 31 31 H 0.96700 * 113.99509 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.45308 * 179.73022 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8820 2.3964 1.2125 7 6 2.0073 -1.2136 -0.0005 8 1 3.0874 -1.2136 -0.0010 9 6 1.3020 -2.4353 -0.0005 10 7 1.9877 -3.5826 -0.0005 11 6 1.3638 -4.7411 0.0000 12 6 -0.0405 -4.7605 0.0011 13 6 -0.7800 -6.0413 0.0011 14 6 -0.4592 -7.0368 -0.9248 15 6 -1.1530 -8.2284 -0.9197 16 6 -2.1655 -8.4404 0.0007 17 6 -2.4893 -7.4596 0.9210 18 6 -3.5925 -7.6999 1.9191 19 8 -4.1447 -9.0019 1.7145 20 6 -1.8073 -6.2590 0.9234 21 17 -2.2198 -5.0261 2.0739 22 6 -0.7258 -3.5346 -0.0039 23 7 -0.0344 -2.4151 0.0005 24 1 -0.4850 0.8401 0.0004 25 1 1.9241 -5.6645 0.0004 26 1 0.3304 -6.8734 -1.6431 27 1 -0.9059 -8.9984 -1.6354 28 1 -2.7055 -9.3757 -0.0005 29 1 -3.1895 -7.6311 2.9296 30 1 -4.3719 -6.9495 1.7869 31 1 -4.8616 -9.2252 2.3238 32 1 -1.8055 -3.5111 -0.0076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243708028.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -11.165969 kcal Electronic energy + Delta-G solvation = -19596.396237 eV Core-core repulsion = 16353.684627 eV Total energy + Delta-G solvation = -3242.711610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06728 -40.06821 -37.62647 -37.31272 -35.82197 -33.89652 -33.62279 -32.31176 -30.66194 -27.89140 -27.04148 -24.68256 -24.36624 -22.75192 -21.73006 -19.81336 -18.46589 -17.95210 -17.85031 -16.96367 -16.47873 -16.24402 -16.06127 -15.84390 -15.01850 -14.85225 -14.72442 -14.54259 -14.03065 -13.97757 -13.24655 -13.09300 -12.94515 -12.81387 -12.65240 -12.38381 -12.21817 -11.93702 -11.66943 -11.40033 -11.24505 -11.10325 -10.97553 -10.28703 -9.57811 -9.44859 -9.07576 -8.47850 -6.76816 0.06112 0.25916 0.85153 1.06575 1.26465 1.39392 1.49907 1.57094 2.17802 2.63392 2.78309 3.18822 3.83514 3.89023 3.96185 3.99425 4.02116 4.16106 4.30079 4.37818 4.45636 4.49019 4.59881 4.80172 4.94137 5.01803 5.11918 5.29909 5.42968 5.48547 5.59915 5.75938 5.95410 6.09956 6.47458 6.55783 6.89306 7.13138 8.16675 8.30621 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.004141 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.351622 B = 6760.687174 C = 7391.139544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.022 3.978 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.093 0.907 9 C 0.357 3.643 10 N -0.619 5.619 11 C 0.179 3.821 12 C -0.314 4.314 13 C 0.006 3.994 14 C -0.119 4.119 15 C -0.102 4.102 16 C -0.106 4.106 17 C -0.089 4.089 18 C 0.124 3.876 19 O -0.577 6.577 20 C -0.054 4.054 21 Cl -0.078 7.078 22 C 0.180 3.820 23 N -0.539 5.539 24 H 0.287 0.713 25 H 0.162 0.838 26 H 0.135 0.865 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.404 0.596 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 -12.592 1.771 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.202 4.202 3 Si 0.820 3.180 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.457 4.457 8 H 0.111 0.889 9 C 0.123 3.877 10 N -0.338 5.338 11 C 0.006 3.994 12 C -0.323 4.323 13 C 0.004 3.996 14 C -0.138 4.138 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.089 4.089 18 C 0.046 3.954 19 O -0.386 6.386 20 C -0.081 4.081 21 Cl -0.049 7.049 22 C 0.005 3.995 23 N -0.256 5.256 24 H 0.098 0.902 25 H 0.179 0.821 26 H 0.153 0.847 27 H 0.177 0.823 28 H 0.169 0.831 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.255 0.745 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.722 -11.354 1.419 13.271 hybrid contribution -0.684 0.139 0.635 0.944 sum -7.407 -11.215 2.054 13.596 Atomic orbital electron populations 1.70201 1.09073 1.29992 1.26620 1.27145 0.95892 1.04810 0.92392 0.84877 0.79182 0.74705 0.79250 1.17731 1.18440 1.18572 1.19787 0.95177 0.88972 1.41717 0.88915 1.20340 0.86522 0.91801 0.89074 1.68665 1.41227 0.99087 1.24837 1.23151 0.90882 0.96048 0.89292 1.19793 0.95136 0.93438 1.23980 1.18478 0.93646 0.93260 0.94239 1.21446 1.01124 0.93188 0.98008 1.21485 0.94833 0.96892 0.98757 1.21150 0.97720 0.99299 0.94223 1.19669 0.97901 0.92225 0.99149 1.20760 0.93257 0.85403 0.95931 1.86349 1.56728 1.32668 1.62864 1.20933 1.00541 0.91015 0.95573 1.98348 1.92714 1.54679 1.59197 1.23243 0.99290 0.88043 0.88928 1.69311 1.08175 1.28137 1.19942 0.90233 0.82100 0.84726 0.82324 0.83066 0.91437 0.91393 0.74548 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.12 11.40 21.85 0.25 -38.87 16 2 C 0.02 1.12 5.50 85.33 0.47 1.59 16 3 Si 1.00 37.40 29.56 68.60 2.03 39.43 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.42 -23.61 9.35 23.43 0.22 -23.39 16 8 H 0.09 4.99 7.85 -2.91 -0.02 4.97 16 9 C 0.36 20.71 7.35 134.90 0.99 21.70 16 10 N -0.62 -33.35 10.34 -193.16 -2.00 -35.35 16 11 C 0.18 8.20 10.85 85.27 0.93 9.13 16 12 C -0.31 -13.82 5.15 -19.64 -0.10 -13.92 16 13 C 0.01 0.22 5.52 -20.00 -0.11 0.11 16 14 C -0.12 -3.50 9.56 22.54 0.22 -3.29 16 15 C -0.10 -2.40 10.03 22.24 0.22 -2.17 16 16 C -0.11 -2.58 9.38 22.35 0.21 -2.38 16 17 C -0.09 -2.43 5.88 -19.88 -0.12 -2.55 16 18 C 0.12 2.64 6.40 71.24 0.46 3.10 16 19 O -0.58 -10.07 12.13 -148.98 -1.81 -11.88 16 20 C -0.05 -1.78 6.30 22.60 0.14 -1.64 16 21 Cl -0.08 -2.71 25.08 -2.72 -0.07 -2.78 16 22 C 0.18 8.89 9.50 85.27 0.81 9.70 16 23 N -0.54 -30.66 7.83 -193.17 -1.51 -32.18 16 24 H 0.29 13.47 8.29 -92.71 -0.77 12.70 16 25 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 26 H 0.13 3.69 8.06 -2.92 -0.02 3.67 16 27 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 28 H 0.15 3.17 6.99 -2.91 -0.02 3.15 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.40 2.94 9.12 -74.06 -0.68 2.26 16 32 H 0.14 6.25 7.23 -2.91 -0.02 6.23 16 Total: -1.00 -68.62 298.35 1.73 -66.89 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.50 Total: 18.75 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 4.33 Total: -4.02 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -3.26 Total: -106.40 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.81 Total: -11.88 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 17 Polarization: -2.71 SS G_CDS: -0.07 Total: -2.78 kcal Total: -68.62 1.73 -66.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243708028.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.720 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds