Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47298 * 299.99812 * 3 2 1 6 6 H 1.48495 * 109.47183 * 60.00145 * 3 2 1 7 7 C 1.40050 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00689 * 168.74854 * 7 2 1 9 9 C 1.41334 * 120.00013 * 348.73711 * 7 2 1 10 10 C 1.40854 * 120.15055 * 173.03224 * 9 7 2 11 11 N 1.31860 * 119.96740 * 179.97438 * 10 9 7 12 12 C 1.32201 * 120.28440 * 0.02562 * 11 10 9 13 13 C 1.40017 * 120.29525 * 0.02562 * 12 11 10 14 14 C 1.48275 * 119.98066 * 179.97438 * 13 12 11 15 15 C 1.39535 * 120.13443 * 308.73970 * 14 13 12 16 16 Cl 1.73596 * 120.07938 * 359.95908 * 15 14 13 17 17 C 1.38117 * 119.83883 * 179.97438 * 15 14 13 18 18 C 1.38322 * 120.11446 * 359.97438 * 17 15 14 19 19 C 1.38333 * 120.27061 * 0.02562 * 18 17 15 20 20 C 1.38006 * 120.15827 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.06033 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.46828 * 5.28846 * 21 20 19 23 23 N 1.32544 * 120.03145 * 0.23320 * 13 12 11 24 24 H 0.97001 * 119.99713 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.01445 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.85014 * 180.02562 * 12 11 10 27 27 H 1.08003 * 119.94281 * 180.02562 * 17 15 14 28 28 H 1.08005 * 119.86293 * 180.02562 * 18 17 15 29 29 H 1.07994 * 119.91641 * 180.27214 * 19 18 17 30 30 H 1.09005 * 109.47104 * 125.28515 * 21 20 19 31 31 H 1.08996 * 109.47310 * 245.28654 * 21 20 19 32 32 H 0.96706 * 113.99825 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0720 -1.2219 -0.1830 9 6 1.3214 -2.4252 0.2380 10 6 1.9898 -3.6566 0.0941 11 7 1.3462 -4.7855 0.3180 12 6 0.0740 -4.7677 0.6771 13 6 -0.6019 -3.5501 0.8225 14 6 -2.0289 -3.5383 1.2250 15 6 -2.9571 -4.3213 0.5377 16 17 -2.4445 -5.3117 -0.7927 17 6 -4.2848 -4.3060 0.9181 18 6 -4.6939 -3.5172 1.9782 19 6 -3.7776 -2.7393 2.6628 20 6 -2.4485 -2.7451 2.2915 21 6 -1.4523 -1.8963 3.0386 22 8 -2.0956 -1.2782 4.1548 23 7 0.0319 -2.4084 0.5955 24 1 -0.4850 0.8401 -0.0004 25 1 3.0289 -3.6762 -0.1994 26 1 -0.4462 -5.6965 0.8592 27 1 -5.0046 -4.9117 0.3875 28 1 -5.7331 -3.5087 2.2725 29 1 -4.1026 -2.1289 3.4924 30 1 -0.6338 -2.5233 3.3924 31 1 -1.0595 -1.1271 2.3737 32 1 -1.5127 -0.7150 4.6824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243708834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = 5.489157 kcal Electronic energy + Delta-G solvation = -20438.385959 eV Core-core repulsion = 17196.396570 eV Total energy + Delta-G solvation = -3241.989390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64238 -38.42151 -36.47417 -35.76815 -34.14827 -32.89729 -31.32504 -30.82636 -29.06511 -26.33283 -25.52183 -23.43487 -22.32602 -21.16979 -20.47625 -17.74338 -17.06982 -16.56657 -15.84570 -15.28814 -15.18977 -14.89153 -14.74227 -14.30957 -13.80528 -13.66343 -13.03778 -12.94927 -12.71131 -12.06966 -11.71573 -11.58196 -11.46605 -11.13287 -11.05246 -10.90949 -10.82357 -10.50766 -10.17303 -9.98206 -9.83618 -9.60229 -9.28184 -8.51369 -8.24712 -7.70687 -7.46145 -6.69989 -4.75897 1.38654 1.55760 2.45029 2.56529 2.84134 2.96750 3.00625 3.10018 3.76388 3.96643 4.49432 4.52077 4.97893 5.17323 5.27177 5.51494 5.68820 5.75049 5.86518 5.86878 6.06260 6.10588 6.25615 6.31064 6.43348 6.58335 6.66675 6.76944 6.87854 6.93972 7.07454 7.13715 7.54776 7.91750 7.94274 8.30075 8.54236 9.13134 9.66457 10.01140 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.007018 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.321672 B = 3988.947712 C = 5029.549869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.416 4.416 8 H 0.092 0.908 9 C 0.209 3.791 10 C -0.058 4.058 11 N -0.428 5.428 12 C -0.086 4.086 13 C 0.130 3.870 14 C 0.003 3.997 15 C -0.022 4.022 16 Cl -0.064 7.064 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.043 4.043 21 C 0.116 3.884 22 O -0.580 6.580 23 N -0.441 5.441 24 H 0.279 0.721 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -0.847 4.146 7.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.155 4.155 3 Si 0.732 3.268 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.447 4.447 8 H 0.110 0.890 9 C 0.082 3.918 10 C -0.228 4.228 11 N -0.140 5.140 12 C -0.245 4.245 13 C -0.017 4.017 14 C 0.001 3.999 15 C -0.050 4.050 16 Cl -0.035 7.035 17 C -0.139 4.139 18 C -0.136 4.136 19 C -0.120 4.120 20 C -0.044 4.044 21 C 0.039 3.961 22 O -0.385 6.385 23 N -0.158 5.158 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.900 -1.126 3.751 7.935 hybrid contribution 0.851 0.912 -0.074 1.250 sum -6.049 -0.214 3.678 7.083 Atomic orbital electron populations 1.70001 1.07408 1.28706 1.27193 1.26088 0.94880 1.01369 0.93209 0.86236 0.81007 0.80714 0.78798 1.18130 1.19708 1.19590 1.19625 0.95996 0.89433 1.39667 0.88999 1.19343 0.88665 0.93433 0.90321 1.23240 1.00395 0.89095 1.10088 1.67708 1.08223 1.30890 1.07131 1.22497 0.92289 0.96389 1.13314 1.20400 0.92142 0.92100 0.97095 1.18201 0.92058 0.95148 0.94486 1.20821 0.93704 0.97709 0.92746 1.98357 1.91295 1.68204 1.45653 1.20863 0.93536 1.00967 0.98501 1.21046 0.99574 0.97123 0.95881 1.20964 0.92227 0.98859 0.99951 1.19629 0.94487 0.95528 0.94770 1.21031 0.91793 0.96233 0.87059 1.86300 1.41754 1.67236 1.43239 1.69481 1.08215 1.23891 1.14247 0.91005 0.84822 0.85498 0.85302 0.85546 0.84795 0.93023 0.88286 0.77436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.33 11.66 55.55 0.65 -16.68 16 2 C 0.07 1.65 5.45 -17.34 -0.09 1.56 16 3 Si 0.91 17.08 29.57 -169.99 -5.03 12.05 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.42 -10.16 9.14 -37.73 -0.34 -10.50 16 8 H 0.09 2.08 7.87 -52.49 -0.41 1.67 16 9 C 0.21 5.36 6.51 -84.83 -0.55 4.81 16 10 C -0.06 -1.42 10.98 -16.55 -0.18 -1.61 16 11 N -0.43 -10.48 10.47 -12.05 -0.13 -10.61 16 12 C -0.09 -2.02 9.38 -16.73 -0.16 -2.18 16 13 C 0.13 3.07 5.28 -82.77 -0.44 2.63 16 14 C 0.00 0.07 5.60 -104.86 -0.59 -0.51 16 15 C -0.02 -0.41 6.29 -39.14 -0.25 -0.66 16 16 Cl -0.06 -1.17 26.10 -51.86 -1.35 -2.52 16 17 C -0.12 -1.84 9.82 -39.59 -0.39 -2.23 16 18 C -0.12 -1.69 10.04 -39.52 -0.40 -2.09 16 19 C -0.10 -1.68 9.37 -39.63 -0.37 -2.05 16 20 C -0.04 -0.83 5.90 -104.28 -0.62 -1.45 16 21 C 0.12 2.19 6.10 36.00 0.22 2.41 16 22 O -0.58 -9.17 12.16 -35.23 -0.43 -9.60 16 23 N -0.44 -11.21 6.55 -7.50 -0.05 -11.26 16 24 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 25 H 0.13 2.95 8.06 -52.49 -0.42 2.53 16 26 H 0.13 2.77 7.28 -52.49 -0.38 2.39 16 27 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 28 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 29 H 0.13 2.04 7.02 -52.49 -0.37 1.68 16 30 H 0.05 1.02 8.03 -51.93 -0.42 0.60 16 31 H 0.10 2.14 7.30 -51.93 -0.38 1.76 16 32 H 0.38 4.31 9.12 45.56 0.42 4.73 16 LS Contribution 296.76 15.07 4.47 4.47 Total: -1.00 -28.40 296.76 -7.96 -36.37 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -1.95 Total: 9.64 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -4.15 Total: -11.86 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.47 Total: -38.55 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.43 Total: -9.60 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.35 Total: -2.52 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.40 -7.96 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243708834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.858 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds