Wall clock time and date at job start Tue Mar 31 2020 06:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47298 * 299.99812 * 3 2 1 6 6 H 1.48495 * 109.47183 * 60.00145 * 3 2 1 7 7 C 1.40050 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00689 * 168.74854 * 7 2 1 9 9 C 1.41334 * 120.00013 * 348.73711 * 7 2 1 10 10 C 1.40854 * 120.15055 * 173.03224 * 9 7 2 11 11 N 1.31860 * 119.96740 * 179.97438 * 10 9 7 12 12 C 1.32201 * 120.28440 * 0.02562 * 11 10 9 13 13 C 1.40017 * 120.29525 * 0.02562 * 12 11 10 14 14 C 1.48275 * 119.98066 * 179.97438 * 13 12 11 15 15 C 1.39535 * 120.13443 * 308.73970 * 14 13 12 16 16 Cl 1.73596 * 120.07938 * 359.95908 * 15 14 13 17 17 C 1.38117 * 119.83883 * 179.97438 * 15 14 13 18 18 C 1.38322 * 120.11446 * 359.97438 * 17 15 14 19 19 C 1.38333 * 120.27061 * 0.02562 * 18 17 15 20 20 C 1.38006 * 120.15827 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.06033 * 179.97438 * 20 19 18 22 22 O 1.42895 * 109.46828 * 5.28846 * 21 20 19 23 23 N 1.32544 * 120.03145 * 0.23320 * 13 12 11 24 24 H 0.97001 * 119.99713 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.01445 * 359.97438 * 10 9 7 26 26 H 1.07998 * 119.85014 * 180.02562 * 12 11 10 27 27 H 1.08003 * 119.94281 * 180.02562 * 17 15 14 28 28 H 1.08005 * 119.86293 * 180.02562 * 18 17 15 29 29 H 1.07994 * 119.91641 * 180.27214 * 19 18 17 30 30 H 1.09005 * 109.47104 * 125.28515 * 21 20 19 31 31 H 1.08996 * 109.47310 * 245.28654 * 21 20 19 32 32 H 0.96706 * 113.99825 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0720 -1.2219 -0.1830 9 6 1.3214 -2.4252 0.2380 10 6 1.9898 -3.6566 0.0941 11 7 1.3462 -4.7855 0.3180 12 6 0.0740 -4.7677 0.6771 13 6 -0.6019 -3.5501 0.8225 14 6 -2.0289 -3.5383 1.2250 15 6 -2.9571 -4.3213 0.5377 16 17 -2.4445 -5.3117 -0.7927 17 6 -4.2848 -4.3060 0.9181 18 6 -4.6939 -3.5172 1.9782 19 6 -3.7776 -2.7393 2.6628 20 6 -2.4485 -2.7451 2.2915 21 6 -1.4523 -1.8963 3.0386 22 8 -2.0956 -1.2782 4.1548 23 7 0.0319 -2.4084 0.5955 24 1 -0.4850 0.8401 -0.0004 25 1 3.0289 -3.6762 -0.1994 26 1 -0.4462 -5.6965 0.8592 27 1 -5.0046 -4.9117 0.3875 28 1 -5.7331 -3.5087 2.2725 29 1 -4.1026 -2.1289 3.4924 30 1 -0.6338 -2.5233 3.3924 31 1 -1.0595 -1.1271 2.3737 32 1 -1.5127 -0.7150 4.6824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243708834.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:23 Heat of formation + Delta-G solvation = -12.837191 kcal Electronic energy + Delta-G solvation = -20439.180649 eV Core-core repulsion = 17196.396570 eV Total energy + Delta-G solvation = -3242.784080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24930 -39.99410 -37.83947 -37.13224 -35.95583 -34.54985 -33.05057 -32.21027 -30.66986 -28.06277 -27.04109 -25.01996 -24.10992 -22.67778 -21.93136 -19.53313 -18.46969 -18.02093 -17.45033 -17.12356 -16.84797 -16.37117 -16.17519 -15.77321 -15.24408 -15.02081 -14.74762 -14.46834 -14.17948 -13.50811 -13.44078 -13.21590 -13.04658 -12.65161 -12.42330 -12.36975 -12.28273 -12.02312 -11.77685 -11.58485 -11.49155 -11.22915 -11.02860 -10.12951 -9.60245 -9.46930 -9.19562 -8.47908 -6.63578 -0.07077 0.23003 0.74210 1.08447 1.17374 1.41540 1.50841 1.56925 2.17973 2.60654 2.74878 3.19119 3.45626 3.70645 3.94345 4.05591 4.06727 4.28275 4.36075 4.43689 4.50017 4.57183 4.68570 4.72290 4.94727 5.04272 5.09683 5.17859 5.27874 5.39577 5.55701 5.73380 5.86045 6.10305 6.46380 6.69163 6.76809 7.26655 7.81697 8.27192 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.007018 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.321672 B = 3988.947712 C = 5029.549869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.436 4.436 8 H 0.102 0.898 9 C 0.179 3.821 10 C -0.080 4.080 11 N -0.438 5.438 12 C -0.098 4.098 13 C 0.132 3.868 14 C -0.034 4.034 15 C -0.035 4.035 16 Cl -0.071 7.071 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.102 4.102 20 C -0.065 4.065 21 C 0.132 3.868 22 O -0.574 6.574 23 N -0.459 5.459 24 H 0.286 0.714 25 H 0.149 0.851 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.175 0.825 29 H 0.149 0.851 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 0.008 4.769 9.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.467 4.467 8 H 0.120 0.880 9 C 0.053 3.947 10 C -0.249 4.249 11 N -0.150 5.150 12 C -0.256 4.256 13 C -0.016 4.016 14 C -0.036 4.036 15 C -0.062 4.062 16 Cl -0.042 7.042 17 C -0.129 4.129 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.066 4.066 21 C 0.054 3.946 22 O -0.382 6.382 23 N -0.177 5.177 24 H 0.097 0.903 25 H 0.166 0.834 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.193 0.807 29 H 0.167 0.833 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.785 -0.280 4.384 9.822 hybrid contribution 1.300 0.626 -0.217 1.459 sum -7.485 0.346 4.167 8.573 Atomic orbital electron populations 1.70080 1.09028 1.30077 1.27106 1.26970 0.95591 1.04518 0.92160 0.85070 0.79660 0.75693 0.78885 1.17444 1.19257 1.18931 1.20016 0.96682 0.90029 1.39964 0.87996 1.19790 0.89396 0.94416 0.91056 1.23444 1.01196 0.88974 1.11320 1.67685 1.08849 1.31045 1.07398 1.22723 0.92167 0.97108 1.13647 1.20828 0.93646 0.91498 0.95641 1.18267 0.91041 0.97788 0.96494 1.21061 0.94785 0.97654 0.92730 1.98350 1.91579 1.68296 1.45972 1.21305 0.92479 1.00703 0.98442 1.21574 1.01336 0.94508 0.93972 1.21219 0.91171 0.99151 1.00407 1.19764 0.95935 0.95904 0.94990 1.20594 0.91617 0.95115 0.87233 1.86253 1.42019 1.67485 1.42458 1.69518 1.08291 1.24900 1.14970 0.90340 0.83384 0.84356 0.81899 0.80745 0.83333 0.94947 0.91436 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.79 11.66 21.84 0.25 -36.53 16 2 C 0.03 1.48 5.45 85.30 0.46 1.95 16 3 Si 0.99 34.78 29.57 68.60 2.03 36.81 16 4 H -0.25 -8.51 7.11 99.48 0.71 -7.81 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.44 -21.83 9.14 23.47 0.21 -21.61 16 8 H 0.10 4.70 7.87 -2.91 -0.02 4.68 16 9 C 0.18 9.58 6.51 40.24 0.26 9.84 16 10 C -0.08 -4.08 10.98 85.33 0.94 -3.15 16 11 N -0.44 -22.18 10.47 -192.05 -2.01 -24.19 16 12 C -0.10 -4.73 9.38 85.07 0.80 -3.93 16 13 C 0.13 6.43 5.28 42.14 0.22 6.65 16 14 C -0.03 -1.41 5.60 -20.02 -0.11 -1.52 16 15 C -0.03 -1.25 6.29 22.55 0.14 -1.11 16 16 Cl -0.07 -2.56 26.10 -2.72 -0.07 -2.63 16 17 C -0.11 -3.02 9.82 22.26 0.22 -2.80 16 18 C -0.10 -2.34 10.04 22.31 0.22 -2.11 16 19 C -0.10 -3.08 9.37 22.24 0.21 -2.87 16 20 C -0.06 -2.49 5.90 -19.65 -0.12 -2.60 16 21 C 0.13 5.12 6.10 71.23 0.43 5.55 16 22 O -0.57 -17.65 12.16 -148.98 -1.81 -19.46 16 23 N -0.46 -24.28 6.55 -177.65 -1.16 -25.44 16 24 H 0.29 12.80 8.29 -92.71 -0.77 12.03 16 25 H 0.15 6.78 8.06 -2.91 -0.02 6.76 16 26 H 0.14 6.20 7.28 -2.91 -0.02 6.18 16 27 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.15 4.05 7.02 -2.91 -0.02 4.03 16 30 H 0.03 1.35 8.03 -2.38 -0.02 1.33 16 31 H 0.07 3.05 7.30 -2.39 -0.02 3.03 16 32 H 0.40 8.68 9.12 -74.05 -0.68 8.00 16 Total: -1.00 -63.45 296.76 1.63 -61.82 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.51 Total: 27.35 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 3.90 Total: -17.72 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.92 Total: -86.16 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.81 Total: -19.46 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.63 kcal Total: -63.45 1.63 -61.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243708834.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.987 kcal (2) G-P(sol) polarization free energy of solvation -63.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds