Wall clock time and date at job start Tue Mar 31 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46894 * 239.99908 * 3 2 1 5 5 H 1.48497 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47281 * 120.00468 * 3 2 1 7 7 C 1.40172 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.40784 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.33977 * 120.28892 * 6.79279 * 9 7 2 11 11 C 1.31598 * 119.90370 * 180.02562 * 10 9 7 12 12 C 1.39196 * 120.50991 * 359.97438 * 11 10 9 13 13 N 1.32002 * 120.58836 * 0.02562 * 12 11 10 14 14 C 1.32878 * 120.08008 * 0.02562 * 13 12 11 15 15 C 1.47751 * 120.25273 * 180.02562 * 14 13 12 16 16 C 1.39848 * 120.16013 * 90.89098 * 15 14 13 17 17 Cl 1.73596 * 120.09626 * 359.97438 * 16 15 14 18 18 C 1.38046 * 119.80759 * 180.02562 * 16 15 14 19 19 C 1.38372 * 120.13991 * 0.02562 * 18 16 15 20 20 C 1.38412 * 120.33069 * 359.97438 * 19 18 16 21 21 C 1.37920 * 120.18842 * 359.72174 * 20 19 18 22 22 C 1.50690 * 120.07363 * 180.30340 * 21 20 19 23 23 O 1.42899 * 109.47452 * 0.27435 * 22 21 20 24 24 H 0.96992 * 119.99993 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.74416 * 179.72568 * 11 10 9 26 26 H 1.08000 * 119.70644 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.92707 * 179.97438 * 18 16 15 28 28 H 1.08002 * 119.83673 * 179.97438 * 19 18 16 29 29 H 1.08005 * 119.90927 * 180.02562 * 20 19 18 30 30 H 1.09001 * 109.47186 * 120.27344 * 22 21 20 31 31 H 1.09003 * 109.47254 * 240.27373 * 22 21 20 32 32 H 0.96696 * 114.00341 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0078 -1.2139 -0.0005 8 1 3.0878 -1.2139 -0.0010 9 6 1.3039 -2.4331 -0.0005 10 7 -0.0289 -2.4440 -0.1369 11 6 -0.6793 -3.5880 -0.1353 12 6 0.0069 -4.7908 0.0066 13 7 1.3198 -4.8031 0.1422 14 6 1.9999 -3.6616 0.1449 15 6 3.4696 -3.6710 0.2959 16 6 4.2917 -3.7271 -0.8340 17 17 3.5885 -3.7867 -2.4201 18 6 5.6640 -3.7361 -0.6844 19 6 6.2255 -3.6903 0.5794 20 6 5.4173 -3.6346 1.7017 21 6 4.0447 -3.6187 1.5678 22 6 3.1674 -3.5511 2.7911 23 8 3.9852 -3.5064 3.9620 24 1 -0.4850 0.8400 0.0004 25 1 -1.7541 -3.5935 -0.2409 26 1 -0.5400 -5.7221 0.0065 27 1 6.3007 -3.7799 -1.5557 28 1 7.2997 -3.6980 0.6908 29 1 5.8628 -3.5987 2.6849 30 1 2.5488 -2.6548 2.7455 31 1 2.5274 -4.4327 2.8284 32 1 3.4861 -3.4623 4.7890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243709125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:26 Heat of formation + Delta-G solvation = 5.693232 kcal Electronic energy + Delta-G solvation = -20638.035781 eV Core-core repulsion = 17396.055240 eV Total energy + Delta-G solvation = -3241.980540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.53565 -38.30070 -36.42796 -35.60738 -34.16386 -32.65840 -31.50021 -30.67502 -28.93739 -26.20725 -25.63693 -23.40510 -22.02898 -21.19587 -20.42714 -17.69658 -17.11506 -16.57330 -16.14459 -15.30940 -14.99125 -14.69827 -14.45626 -14.29878 -13.82666 -13.64121 -12.84225 -12.77323 -12.63277 -12.29864 -11.70130 -11.57069 -11.40378 -11.00400 -10.91350 -10.86254 -10.71905 -10.40471 -10.13050 -9.97887 -9.86110 -9.60288 -9.14508 -8.23010 -8.11042 -7.85986 -7.43385 -6.62086 -4.80007 1.70192 1.73173 2.39214 2.79726 2.87849 2.96370 2.99615 3.13519 3.77600 4.08304 4.48766 4.54556 5.19634 5.26010 5.36696 5.55892 5.78101 5.84217 5.88963 5.93192 5.97814 6.12418 6.29540 6.33675 6.42546 6.60829 6.78012 6.83319 6.92589 7.02792 7.05622 7.28898 7.58524 7.86290 7.95530 8.28885 8.56591 9.14505 9.74410 10.00176 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.008279 C = 0.007642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.627417 B = 3381.237369 C = 3663.313354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.397 4.397 8 H 0.089 0.911 9 C 0.231 3.769 10 N -0.453 5.453 11 C 0.089 3.911 12 C -0.123 4.123 13 N -0.405 5.405 14 C -0.033 4.033 15 C 0.051 3.949 16 C -0.021 4.021 17 Cl -0.068 7.068 18 C -0.119 4.119 19 C -0.126 4.126 20 C -0.100 4.100 21 C -0.065 4.065 22 C 0.124 3.876 23 O -0.574 6.574 24 H 0.280 0.720 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.208 -2.143 2.712 7.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.160 4.160 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.427 4.427 8 H 0.107 0.893 9 C 0.106 3.894 10 N -0.169 5.169 11 C -0.082 4.082 12 C -0.283 4.283 13 N -0.117 5.117 14 C -0.181 4.181 15 C 0.048 3.952 16 C -0.049 4.049 17 Cl -0.039 7.039 18 C -0.138 4.138 19 C -0.145 4.145 20 C -0.118 4.118 21 C -0.066 4.066 22 C 0.047 3.953 23 O -0.380 6.380 24 H 0.091 0.909 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.378 -1.996 2.107 7.007 hybrid contribution -0.381 0.691 0.100 0.796 sum 5.997 -1.305 2.208 6.522 Atomic orbital electron populations 1.70032 1.07389 1.28808 1.26153 1.26168 0.94966 1.01504 0.93392 0.86359 0.80294 0.79822 0.80563 1.18377 1.19873 1.18428 1.19574 0.94667 0.89109 1.39378 0.89317 1.19114 0.88776 0.91836 0.89637 1.69552 1.07377 1.24680 1.15339 1.23522 0.99937 0.90376 0.94348 1.22503 0.90821 0.97792 1.17210 1.67710 1.08355 1.29199 1.06409 1.19820 0.91206 0.90717 1.16361 1.17863 0.91639 0.95602 0.90080 1.20993 0.92500 1.05208 0.86154 1.98338 1.84938 1.96716 1.23912 1.20875 0.92543 1.02265 0.98098 1.20988 0.99498 1.02301 0.91705 1.20893 0.92728 0.99185 0.98964 1.19668 0.93829 1.00457 0.92676 1.20790 0.91000 1.01161 0.82395 1.86350 1.37620 1.97740 1.16269 0.90904 0.85332 0.85509 0.85617 0.85804 0.85038 0.91336 0.92236 0.77512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.58 11.51 55.56 0.64 -16.94 16 2 C 0.07 1.62 5.50 -17.31 -0.10 1.53 16 3 Si 0.91 17.87 29.56 -169.99 -5.03 12.85 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.40 -10.03 8.77 -37.89 -0.33 -10.36 16 8 H 0.09 2.19 6.89 -52.49 -0.36 1.83 16 9 C 0.23 5.95 6.55 -84.55 -0.55 5.40 16 10 N -0.45 -11.86 8.07 -10.73 -0.09 -11.95 16 11 C 0.09 2.06 11.22 -17.30 -0.19 1.86 16 12 C -0.12 -2.74 11.22 -17.12 -0.19 -2.93 16 13 N -0.40 -9.66 10.44 -8.98 -0.09 -9.75 16 14 C -0.03 -0.78 4.37 -82.11 -0.36 -1.14 16 15 C 0.05 1.09 4.09 -104.87 -0.43 0.67 16 16 C -0.02 -0.42 6.35 -39.05 -0.25 -0.67 16 17 Cl -0.07 -1.38 28.04 -51.86 -1.45 -2.83 16 18 C -0.12 -1.99 9.82 -39.60 -0.39 -2.38 16 19 C -0.13 -1.95 10.04 -39.47 -0.40 -2.34 16 20 C -0.10 -1.70 9.37 -39.63 -0.37 -2.07 16 21 C -0.07 -1.28 5.92 -104.21 -0.62 -1.90 16 22 C 0.12 2.26 6.46 36.00 0.23 2.49 16 23 O -0.57 -8.72 12.14 -35.23 -0.43 -9.15 16 24 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.13 2.05 7.00 -52.48 -0.37 1.68 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.38 3.89 9.12 45.56 0.42 4.31 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -29.45 300.58 -7.85 -37.29 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -1.98 Total: 7.79 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.94 Total: -11.85 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.46 Total: -38.63 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.43 Total: -9.15 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.45 Total: -2.83 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.45 -7.85 -37.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243709125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.988 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds