Wall clock time and date at job start Tue Mar 31 2020 06:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46894 * 239.99908 * 3 2 1 5 5 H 1.48497 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47281 * 120.00468 * 3 2 1 7 7 C 1.40172 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.40784 * 119.99929 * 359.97438 * 7 2 1 10 10 N 1.33977 * 120.28892 * 6.79279 * 9 7 2 11 11 C 1.31598 * 119.90370 * 180.02562 * 10 9 7 12 12 C 1.39196 * 120.50991 * 359.97438 * 11 10 9 13 13 N 1.32002 * 120.58836 * 0.02562 * 12 11 10 14 14 C 1.32878 * 120.08008 * 0.02562 * 13 12 11 15 15 C 1.47751 * 120.25273 * 180.02562 * 14 13 12 16 16 C 1.39848 * 120.16013 * 90.89098 * 15 14 13 17 17 Cl 1.73596 * 120.09626 * 359.97438 * 16 15 14 18 18 C 1.38046 * 119.80759 * 180.02562 * 16 15 14 19 19 C 1.38372 * 120.13991 * 0.02562 * 18 16 15 20 20 C 1.38412 * 120.33069 * 359.97438 * 19 18 16 21 21 C 1.37920 * 120.18842 * 359.72174 * 20 19 18 22 22 C 1.50690 * 120.07363 * 180.30340 * 21 20 19 23 23 O 1.42899 * 109.47452 * 0.27435 * 22 21 20 24 24 H 0.96992 * 119.99993 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.74416 * 179.72568 * 11 10 9 26 26 H 1.08000 * 119.70644 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.92707 * 179.97438 * 18 16 15 28 28 H 1.08002 * 119.83673 * 179.97438 * 19 18 16 29 29 H 1.08005 * 119.90927 * 180.02562 * 20 19 18 30 30 H 1.09001 * 109.47186 * 120.27344 * 22 21 20 31 31 H 1.09003 * 109.47254 * 240.27373 * 22 21 20 32 32 H 0.96696 * 114.00341 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0078 -1.2139 -0.0005 8 1 3.0878 -1.2139 -0.0010 9 6 1.3039 -2.4331 -0.0005 10 7 -0.0289 -2.4440 -0.1369 11 6 -0.6793 -3.5880 -0.1353 12 6 0.0069 -4.7908 0.0066 13 7 1.3198 -4.8031 0.1422 14 6 1.9999 -3.6616 0.1449 15 6 3.4696 -3.6710 0.2959 16 6 4.2917 -3.7271 -0.8340 17 17 3.5885 -3.7867 -2.4201 18 6 5.6640 -3.7361 -0.6844 19 6 6.2255 -3.6903 0.5794 20 6 5.4173 -3.6346 1.7017 21 6 4.0447 -3.6187 1.5678 22 6 3.1674 -3.5511 2.7911 23 8 3.9852 -3.5064 3.9620 24 1 -0.4850 0.8400 0.0004 25 1 -1.7541 -3.5935 -0.2409 26 1 -0.5400 -5.7221 0.0065 27 1 6.3007 -3.7799 -1.5557 28 1 7.2997 -3.6980 0.6908 29 1 5.8628 -3.5987 2.6849 30 1 2.5488 -2.6548 2.7455 31 1 2.5274 -4.4327 2.8284 32 1 3.4861 -3.4623 4.7890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243709125.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:25 Heat of formation + Delta-G solvation = -13.771993 kcal Electronic energy + Delta-G solvation = -20638.879856 eV Core-core repulsion = 17396.055240 eV Total energy + Delta-G solvation = -3242.824616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17170 -39.86975 -37.77825 -37.05128 -35.96694 -34.33710 -33.19755 -32.11224 -30.54803 -27.98862 -27.08314 -25.02543 -23.84108 -22.68008 -21.90334 -19.53391 -18.44121 -18.00238 -17.92877 -16.83819 -16.70609 -16.11737 -15.93654 -15.89343 -15.31465 -14.99365 -14.58253 -14.42959 -14.09406 -13.79538 -13.30306 -13.18447 -13.01961 -12.56898 -12.35799 -12.32334 -12.21805 -12.04151 -11.69313 -11.59765 -11.46292 -11.26354 -10.96670 -9.73945 -9.67149 -9.52898 -9.17836 -8.40284 -6.65754 0.30395 0.32970 0.60392 1.09952 1.31523 1.35909 1.47277 1.51017 2.14877 2.69821 2.75008 3.22029 3.65374 3.74298 3.96212 4.12070 4.18663 4.35895 4.42381 4.47298 4.50729 4.55118 4.67133 4.79398 4.95430 5.04170 5.11997 5.23302 5.40032 5.45878 5.63876 5.80303 5.94916 6.09717 6.47387 6.73018 6.80279 7.33272 7.91863 8.25709 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.008279 C = 0.007642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.627417 B = 3381.237369 C = 3663.313354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.028 3.972 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.254 1.254 7 C -0.419 4.419 8 H 0.085 0.915 9 C 0.208 3.792 10 N -0.488 5.488 11 C 0.076 3.924 12 C -0.123 4.123 13 N -0.425 5.425 14 C -0.022 4.022 15 C 0.015 3.985 16 C -0.041 4.041 17 Cl -0.082 7.082 18 C -0.114 4.114 19 C -0.108 4.108 20 C -0.098 4.098 21 C -0.086 4.086 22 C 0.138 3.862 23 O -0.570 6.570 24 H 0.286 0.714 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.150 0.850 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.484 -1.966 3.245 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.178 1.178 7 C -0.450 4.450 8 H 0.103 0.897 9 C 0.083 3.917 10 N -0.205 5.205 11 C -0.094 4.094 12 C -0.283 4.283 13 N -0.137 5.137 14 C -0.170 4.170 15 C 0.013 3.987 16 C -0.069 4.069 17 Cl -0.053 7.053 18 C -0.133 4.133 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.087 4.087 22 C 0.061 3.939 23 O -0.379 6.379 24 H 0.097 0.903 25 H 0.174 0.826 26 H 0.175 0.825 27 H 0.173 0.827 28 H 0.189 0.811 29 H 0.168 0.832 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.632 -1.849 2.662 9.220 hybrid contribution -1.051 0.501 -0.006 1.164 sum 7.581 -1.348 2.656 8.146 Atomic orbital electron populations 1.70098 1.08789 1.30025 1.27089 1.26976 0.95688 1.04435 0.92502 0.85364 0.79085 0.75723 0.80511 1.18275 1.18619 1.17843 1.19711 0.94591 0.89907 1.40776 0.89661 1.19453 0.89069 0.92985 0.90210 1.69490 1.08092 1.26289 1.16672 1.23986 1.01299 0.90031 0.94065 1.23016 0.90733 0.98878 1.15636 1.67803 1.09049 1.29492 1.07340 1.20069 0.92569 0.89970 1.14430 1.17960 0.90633 0.98456 0.91633 1.21245 0.93847 1.06612 0.85170 1.98323 1.85422 1.96872 1.24728 1.21271 0.91276 1.00726 1.00000 1.21501 1.01623 0.99188 0.90262 1.21185 0.91656 0.98158 1.00582 1.19871 0.95337 1.01316 0.92176 1.20418 0.90736 0.99268 0.83518 1.86294 1.37483 1.97554 1.16535 0.90276 0.82623 0.82494 0.82664 0.81128 0.83236 0.93927 0.93511 0.75014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.77 11.51 21.86 0.25 -37.52 16 2 C 0.03 1.38 5.50 85.33 0.47 1.85 16 3 Si 0.97 36.65 29.56 68.60 2.03 38.68 16 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.42 -21.74 8.77 23.36 0.20 -21.54 16 8 H 0.09 4.33 6.89 -2.91 -0.02 4.31 16 9 C 0.21 11.04 6.55 40.36 0.26 11.31 16 10 N -0.49 -26.32 8.07 -187.85 -1.52 -27.83 16 11 C 0.08 3.53 11.22 84.96 0.95 4.49 16 12 C -0.12 -5.51 11.22 84.90 0.95 -4.56 16 13 N -0.42 -20.56 10.44 -182.31 -1.90 -22.47 16 14 C -0.02 -1.08 4.37 42.42 0.19 -0.89 16 15 C 0.02 0.67 4.09 -20.02 -0.08 0.59 16 16 C -0.04 -1.63 6.35 22.61 0.14 -1.49 16 17 Cl -0.08 -3.33 28.04 -2.72 -0.08 -3.41 16 18 C -0.11 -3.49 9.82 22.26 0.22 -3.27 16 19 C -0.11 -2.87 10.04 22.34 0.22 -2.65 16 20 C -0.10 -3.07 9.37 22.24 0.21 -2.86 16 21 C -0.09 -3.32 5.92 -19.59 -0.12 -3.44 16 22 C 0.14 5.08 6.46 71.23 0.46 5.55 16 23 O -0.57 -16.46 12.14 -148.98 -1.81 -18.27 16 24 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 25 H 0.16 6.16 8.06 -2.91 -0.02 6.13 16 26 H 0.16 5.90 8.06 -2.91 -0.02 5.87 16 27 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 29 H 0.15 4.12 7.00 -2.91 -0.02 4.10 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.40 7.58 9.12 -74.06 -0.68 6.91 16 Total: -1.00 -65.32 300.58 1.57 -63.75 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.50 Total: 23.99 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.09 Total: -16.92 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -3.17 Total: -87.82 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -1.81 Total: -18.27 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.08 Total: -3.41 kcal Total: -65.32 1.57 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243709125.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.982 kcal (2) G-P(sol) polarization free energy of solvation -65.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds