Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86801 * 120.00218 * 2 1 4 4 H 1.48502 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46894 * 300.00256 * 3 2 1 6 6 H 1.48505 * 109.46817 * 60.00038 * 3 2 1 7 7 C 1.40174 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.40793 * 120.00121 * 359.97438 * 7 2 1 10 10 N 1.33973 * 120.28588 * 10.30642 * 9 7 2 11 11 C 1.31608 * 119.89986 * 179.97438 * 10 9 7 12 12 C 1.39197 * 120.50531 * 0.02562 * 11 10 9 13 13 N 1.32010 * 120.58606 * 359.96814 * 12 11 10 14 14 C 1.32857 * 120.08139 * 0.03137 * 13 12 11 15 15 C 1.47791 * 120.24960 * 179.97438 * 14 13 12 16 16 C 1.39716 * 120.14591 * 224.10571 * 15 14 13 17 17 C 1.37901 * 119.86920 * 179.97438 * 16 15 14 18 18 C 1.38405 * 120.17046 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.85032 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47428 * 0.02562 * 19 18 17 21 21 C 1.38496 * 120.29245 * 0.02562 * 18 17 16 22 22 Cl 1.73603 * 119.93419 * 180.02562 * 21 18 17 23 23 C 1.38062 * 120.13013 * 359.73928 * 21 18 17 24 24 H 0.96995 * 120.00125 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.74562 * 180.27405 * 11 10 9 26 26 H 1.07992 * 119.70505 * 179.97438 * 12 11 10 27 27 H 1.08001 * 120.06712 * 359.95754 * 16 15 14 28 28 H 1.08002 * 119.91270 * 180.02562 * 17 16 15 29 29 H 1.09008 * 109.46917 * 120.00148 * 19 18 17 30 30 H 1.08998 * 109.47133 * 239.99680 * 19 18 17 31 31 H 0.96702 * 114.00234 * 179.97438 * 20 19 18 32 32 H 1.07996 * 120.08706 * 180.28329 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2126 7 6 2.0077 -1.2139 -0.0005 8 1 3.0878 -1.2140 -0.0010 9 6 1.3037 -2.4333 -0.0005 10 7 -0.0199 -2.4493 -0.2070 11 6 -0.6702 -3.5934 -0.2059 12 6 0.0065 -4.7907 0.0089 13 7 1.3105 -4.7977 0.2143 14 6 1.9902 -3.6561 0.2180 15 6 3.4501 -3.6596 0.4481 16 6 4.0270 -2.7223 1.3088 17 6 5.3897 -2.7310 1.5198 18 6 6.1865 -3.6651 0.8809 19 6 7.6748 -3.6685 1.1171 20 8 8.0146 -2.6233 2.0304 21 6 5.6220 -4.5967 0.0255 22 17 6.6301 -5.7645 -0.7705 23 6 4.2585 -4.6021 -0.1909 24 1 -0.4850 0.8400 0.0004 25 1 -1.7365 -3.6038 -0.3770 26 1 -0.5401 -5.7220 0.0076 27 1 3.4069 -1.9922 1.8077 28 1 5.8364 -2.0071 2.1852 29 1 7.9739 -4.6290 1.5370 30 1 8.1931 -3.5081 0.1717 31 1 8.9592 -2.5665 2.2293 32 1 3.8185 -5.3317 -0.8545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243815827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = -14.702157 kcal Electronic energy + Delta-G solvation = -19907.073366 eV Core-core repulsion = 16664.208415 eV Total energy + Delta-G solvation = -3242.864951 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16805 -40.03528 -37.57179 -37.41401 -36.04308 -34.33866 -33.29521 -31.74813 -31.06847 -28.22312 -27.03204 -24.37261 -23.85065 -23.33100 -21.87559 -19.59028 -18.43541 -18.10192 -17.80663 -16.91518 -16.49261 -16.03357 -15.97363 -15.86390 -15.56247 -14.90955 -14.57517 -14.53170 -14.03522 -13.90473 -13.32718 -13.23550 -13.03137 -12.75482 -12.57561 -12.23016 -12.08052 -11.94212 -11.75961 -11.61177 -11.52335 -11.22333 -11.02159 -10.06618 -9.68254 -9.45681 -9.13432 -8.46867 -6.66358 -0.02851 0.32648 0.72056 1.06591 1.16773 1.38788 1.49960 1.54976 2.15449 2.66349 2.76294 3.25706 3.63828 3.73882 3.95495 4.08212 4.16458 4.28858 4.34911 4.45587 4.56678 4.59686 4.65336 4.79865 4.90284 5.01057 5.07273 5.18564 5.33337 5.45549 5.69576 5.79518 5.89220 6.09524 6.42955 6.67244 6.98116 7.26649 7.84473 8.22891 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.006169 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.364035 B = 4537.817084 C = 6082.744792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.025 3.975 3 Si 0.981 3.019 4 H -0.248 1.248 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.107 0.893 9 C 0.192 3.808 10 N -0.487 5.487 11 C 0.079 3.921 12 C -0.118 4.118 13 N -0.427 5.427 14 C -0.048 4.048 15 C 0.012 3.988 16 C -0.107 4.107 17 C -0.087 4.087 18 C -0.101 4.101 19 C 0.129 3.871 20 O -0.581 6.581 21 C -0.032 4.032 22 Cl -0.061 7.061 23 C -0.107 4.107 24 H 0.288 0.712 25 H 0.162 0.838 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.403 0.597 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.025 -2.103 1.660 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.452 4.452 8 H 0.125 0.875 9 C 0.067 3.933 10 N -0.204 5.204 11 C -0.092 4.092 12 C -0.280 4.280 13 N -0.139 5.139 14 C -0.194 4.194 15 C 0.010 3.990 16 C -0.126 4.126 17 C -0.105 4.105 18 C -0.103 4.103 19 C 0.051 3.949 20 O -0.391 6.391 21 C -0.059 4.059 22 Cl -0.032 7.032 23 C -0.127 4.127 24 H 0.099 0.901 25 H 0.179 0.821 26 H 0.180 0.820 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.254 0.746 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.263 -1.955 1.564 12.516 hybrid contribution 0.045 0.129 -0.265 0.298 sum 12.308 -1.826 1.299 12.510 Atomic orbital electron populations 1.70098 1.09148 1.30262 1.26664 1.27122 0.95711 1.04807 0.92312 0.85142 0.79926 0.75597 0.79298 1.17054 1.18900 1.18390 1.20217 0.95748 0.89506 1.39740 0.87542 1.19644 0.89414 0.93510 0.90699 1.69484 1.08103 1.26312 1.16500 1.24076 1.01388 0.89928 0.93770 1.23130 0.91035 0.99258 1.14534 1.67758 1.09187 1.29368 1.07617 1.20428 0.93839 0.90302 1.14836 1.18311 0.90203 0.94893 0.95556 1.21545 0.95568 0.98220 0.97247 1.20946 0.91717 0.98453 0.99364 1.19811 0.97142 0.95659 0.97640 1.20790 0.89285 0.91171 0.93629 1.86399 1.32267 1.54478 1.65926 1.20414 0.90825 0.94907 0.99743 1.98320 1.68252 1.57643 1.79030 1.20994 0.91389 0.99369 1.00923 0.90092 0.82078 0.81975 0.85493 0.83038 0.90605 0.90710 0.74555 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.61 11.54 21.86 0.25 -37.35 16 2 C 0.02 1.19 5.49 85.33 0.47 1.66 16 3 Si 0.98 35.51 29.56 68.60 2.03 37.54 16 4 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.42 -21.55 7.45 23.37 0.17 -21.38 16 8 H 0.11 5.13 5.37 -2.91 -0.02 5.11 16 9 C 0.19 10.39 6.51 40.36 0.26 10.65 16 10 N -0.49 -26.47 8.12 -187.85 -1.53 -28.00 16 11 C 0.08 3.70 11.22 84.96 0.95 4.65 16 12 C -0.12 -5.34 11.22 84.90 0.95 -4.39 16 13 N -0.43 -21.13 10.30 -182.30 -1.88 -23.01 16 14 C -0.05 -2.46 6.42 42.43 0.27 -2.18 16 15 C 0.01 0.54 5.28 -20.05 -0.11 0.43 16 16 C -0.11 -4.29 7.54 22.55 0.17 -4.12 16 17 C -0.09 -2.92 9.36 22.23 0.21 -2.71 16 18 C -0.10 -3.09 5.89 -19.76 -0.12 -3.21 16 19 C 0.13 2.78 6.39 71.23 0.46 3.23 16 20 O -0.58 -11.56 12.12 -148.98 -1.81 -13.37 16 21 C -0.03 -1.06 6.31 22.29 0.14 -0.92 16 22 Cl -0.06 -1.64 27.96 -2.72 -0.08 -1.71 16 23 C -0.11 -4.23 9.45 22.57 0.21 -4.02 16 24 H 0.29 13.02 8.29 -92.71 -0.77 12.26 16 25 H 0.16 6.29 8.06 -2.91 -0.02 6.26 16 26 H 0.16 6.03 8.06 -2.91 -0.02 6.01 16 27 H 0.13 5.34 6.73 -2.91 -0.02 5.32 16 28 H 0.15 4.57 6.99 -2.91 -0.02 4.55 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.40 3.55 9.12 -74.06 -0.68 2.87 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -64.49 296.41 1.56 -62.93 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.51 Total: 25.27 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.05 Total: -22.31 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -3.15 Total: -88.36 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.81 Total: -13.37 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.71 kcal Total: -64.49 1.56 -62.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243815827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.231 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds