Wall clock time and date at job start Tue Mar 31 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48497 * 109.47019 * 239.99722 * 3 2 1 5 5 H 1.48499 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46836 * 119.99814 * 3 2 1 7 7 C 1.40051 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99488 * 186.30550 * 7 2 1 9 9 C 1.41323 * 120.00432 * 6.29825 * 7 2 1 10 10 C 1.40853 * 120.15110 * 173.75221 * 9 7 2 11 11 N 1.31861 * 119.96593 * 179.70089 * 10 9 7 12 12 C 1.32207 * 120.27854 * 0.56281 * 11 10 9 13 13 C 1.39996 * 120.29998 * 359.43823 * 12 11 10 14 14 C 1.48302 * 119.98416 * 180.30303 * 13 12 11 15 15 C 1.39414 * 120.11957 * 4.99427 * 14 13 12 16 16 C 1.37994 * 119.89900 * 179.97438 * 15 14 13 17 17 C 1.38332 * 120.13582 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.87442 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47296 * 359.97438 * 18 17 16 20 20 C 1.38427 * 120.24633 * 359.97438 * 17 16 15 21 21 Cl 1.73602 * 119.95207 * 179.97438 * 20 17 16 22 22 C 1.38145 * 120.09698 * 359.74432 * 20 17 16 23 23 N 1.32538 * 120.03104 * 0.27653 * 13 12 11 24 24 H 0.96996 * 120.00086 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.01895 * 359.96066 * 10 9 7 26 26 H 1.07998 * 119.85139 * 179.71781 * 12 11 10 27 27 H 1.08004 * 120.05362 * 359.96583 * 15 14 13 28 28 H 1.07995 * 119.93111 * 180.02562 * 16 15 14 29 29 H 1.09005 * 109.46587 * 120.00127 * 18 17 16 30 30 H 1.09001 * 109.47065 * 239.99473 * 18 17 16 31 31 H 0.96694 * 114.00014 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.07195 * 180.27768 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0826 -1.2157 0.1033 9 6 1.3073 -2.4332 -0.1332 10 6 2.0148 -3.6440 -0.2652 11 7 1.3578 -4.7811 -0.3838 12 6 0.0358 -4.7896 -0.3906 13 6 -0.6789 -3.5928 -0.2602 14 6 -2.1618 -3.6112 -0.2620 15 6 -2.8464 -4.8254 -0.2885 16 6 -4.2263 -4.8371 -0.2895 17 6 -4.9310 -3.6470 -0.2648 18 6 -6.4379 -3.6668 -0.2655 19 8 -6.8965 -5.0198 -0.2944 20 6 -4.2571 -2.4381 -0.2385 21 17 -5.1492 -0.9491 -0.2083 22 6 -2.8759 -2.4149 -0.2313 23 7 -0.0308 -2.4435 -0.1346 24 1 -0.4850 0.8400 -0.0004 25 1 3.0948 -3.6415 -0.2650 26 1 -0.4953 -5.7244 -0.4927 27 1 -2.2976 -5.7554 -0.3083 28 1 -4.7571 -5.7774 -0.3096 29 1 -6.8080 -3.1763 0.6349 30 1 -6.8077 -3.1392 -1.1447 31 1 -7.8594 -5.1088 -0.2961 32 1 -2.3506 -1.4716 -0.2062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243817387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:12 Heat of formation + Delta-G solvation = 3.368117 kcal Electronic energy + Delta-G solvation = -19651.383923 eV Core-core repulsion = 16409.302558 eV Total energy + Delta-G solvation = -3242.081365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.57355 -38.62289 -36.67992 -36.18028 -34.14356 -32.84038 -31.51181 -30.37727 -29.63019 -26.55370 -25.56888 -22.94157 -22.54184 -21.54204 -20.38865 -17.76968 -17.48681 -16.52882 -15.82207 -15.52315 -15.13059 -15.11528 -14.81982 -14.27238 -13.88985 -13.36399 -13.28483 -13.18020 -12.72241 -12.22215 -11.66446 -11.59619 -11.43696 -11.36711 -11.23682 -10.89718 -10.71317 -10.62638 -10.43093 -10.31181 -9.91269 -9.62786 -9.41712 -8.50979 -8.41212 -7.56069 -7.48538 -6.62603 -4.78412 1.17703 1.65275 2.38182 2.54517 2.91186 2.98417 2.99869 3.12018 3.78619 4.04834 4.06582 4.61525 4.88867 5.09670 5.23336 5.33137 5.38023 5.60440 5.68942 5.78585 5.88429 5.99544 6.20771 6.29293 6.47328 6.53116 6.66378 6.80246 6.89756 7.01025 7.13623 7.23538 7.48361 7.53901 7.94107 8.30824 8.55404 9.12550 9.69100 10.04017 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.005251 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.053046 B = 5331.440900 C = 6946.345610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.067 3.933 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.411 4.411 8 H 0.092 0.908 9 C 0.208 3.792 10 C -0.058 4.058 11 N -0.429 5.429 12 C -0.105 4.105 13 C 0.133 3.867 14 C -0.004 4.004 15 C -0.106 4.106 16 C -0.094 4.094 17 C -0.096 4.096 18 C 0.122 3.878 19 O -0.568 6.568 20 C -0.039 4.039 21 Cl -0.081 7.081 22 C -0.069 4.069 23 N -0.441 5.441 24 H 0.279 0.721 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.380 0.620 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.587 -1.655 -0.311 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.110 0.890 9 C 0.081 3.919 10 C -0.228 4.228 11 N -0.141 5.141 12 C -0.263 4.263 13 C -0.014 4.014 14 C -0.006 4.006 15 C -0.125 4.125 16 C -0.112 4.112 17 C -0.098 4.098 18 C 0.045 3.955 19 O -0.374 6.374 20 C -0.065 4.065 21 Cl -0.052 7.052 22 C -0.089 4.089 23 N -0.159 5.159 24 H 0.090 0.910 25 H 0.153 0.847 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.208 -1.480 -0.296 11.309 hybrid contribution -0.289 1.059 0.001 1.098 sum -11.497 -0.421 -0.295 11.508 Atomic orbital electron populations 1.70006 1.07443 1.28705 1.26970 1.26119 0.94991 1.01449 0.93382 0.86265 0.80079 0.79786 0.80129 1.18693 1.20015 1.18701 1.19620 0.95057 0.89152 1.40406 0.89022 1.19350 0.88644 0.93481 0.90411 1.23250 0.99382 0.89325 1.10883 1.67689 1.08728 1.30037 1.07598 1.22503 0.90676 0.96948 1.16216 1.20550 0.92133 0.91939 0.96809 1.18683 0.91756 0.92186 0.97936 1.21401 0.93922 0.97892 0.99303 1.20733 0.93178 0.97528 0.99787 1.19433 0.94503 0.92097 1.03719 1.20839 0.91028 0.83211 1.00468 1.86440 1.26918 1.26233 1.97768 1.20560 0.92399 0.85651 1.07929 1.98330 1.75508 1.34339 1.97041 1.21533 0.90516 1.01052 0.95761 1.69506 1.08181 1.23058 1.15127 0.90986 0.84732 0.85301 0.85035 0.84472 0.92136 0.92153 0.77272 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.52 11.51 55.55 0.64 -16.88 16 2 C 0.07 1.60 5.49 -17.34 -0.10 1.50 16 3 Si 0.91 17.45 29.56 -169.99 -5.03 12.43 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 7 C -0.41 -10.26 9.15 -37.73 -0.35 -10.61 16 8 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.21 5.46 6.54 -84.84 -0.56 4.91 16 10 C -0.06 -1.43 10.98 -16.55 -0.18 -1.61 16 11 N -0.43 -10.51 10.47 -12.06 -0.13 -10.64 16 12 C -0.11 -2.43 10.61 -16.73 -0.18 -2.61 16 13 C 0.13 3.17 6.73 -82.76 -0.56 2.61 16 14 C 0.00 -0.08 5.87 -104.90 -0.62 -0.69 16 15 C -0.11 -1.82 9.42 -39.23 -0.37 -2.19 16 16 C -0.09 -1.46 9.36 -39.64 -0.37 -1.83 16 17 C -0.10 -1.48 5.89 -104.52 -0.62 -2.09 16 18 C 0.12 1.43 6.40 36.01 0.23 1.66 16 19 O -0.57 -6.01 12.12 -35.23 -0.43 -6.44 16 20 C -0.04 -0.66 6.31 -39.55 -0.25 -0.91 16 21 Cl -0.08 -1.21 27.97 -51.86 -1.45 -2.66 16 22 C -0.07 -1.39 9.36 -39.20 -0.37 -1.76 16 23 N -0.44 -11.60 7.18 -7.50 -0.05 -11.66 16 24 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 25 H 0.14 2.98 8.06 -52.49 -0.42 2.55 16 26 H 0.13 2.57 6.22 -52.49 -0.33 2.24 16 27 H 0.13 2.02 6.22 -52.48 -0.33 1.69 16 28 H 0.14 1.89 6.99 -52.49 -0.37 1.53 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.38 2.04 9.12 45.56 0.42 2.45 16 32 H 0.16 3.65 7.56 -52.49 -0.40 3.25 16 LS Contribution 298.82 15.07 4.50 4.50 Total: -1.00 -29.05 298.82 -8.03 -37.08 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -1.81 Total: 7.90 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -4.27 Total: -13.62 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.46 Total: -39.18 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.43 Total: -6.44 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.45 Total: -2.66 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.05 -8.03 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243817387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.448 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds