Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48497 * 109.47019 * 239.99722 * 3 2 1 5 5 H 1.48499 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46836 * 119.99814 * 3 2 1 7 7 C 1.40051 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99488 * 186.30550 * 7 2 1 9 9 C 1.41323 * 120.00432 * 6.29825 * 7 2 1 10 10 C 1.40853 * 120.15110 * 173.75221 * 9 7 2 11 11 N 1.31861 * 119.96593 * 179.70089 * 10 9 7 12 12 C 1.32207 * 120.27854 * 0.56281 * 11 10 9 13 13 C 1.39996 * 120.29998 * 359.43823 * 12 11 10 14 14 C 1.48302 * 119.98416 * 180.30303 * 13 12 11 15 15 C 1.39414 * 120.11957 * 4.99427 * 14 13 12 16 16 C 1.37994 * 119.89900 * 179.97438 * 15 14 13 17 17 C 1.38332 * 120.13582 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.87442 * 180.02562 * 17 16 15 19 19 O 1.42898 * 109.47296 * 359.97438 * 18 17 16 20 20 C 1.38427 * 120.24633 * 359.97438 * 17 16 15 21 21 Cl 1.73602 * 119.95207 * 179.97438 * 20 17 16 22 22 C 1.38145 * 120.09698 * 359.74432 * 20 17 16 23 23 N 1.32538 * 120.03104 * 0.27653 * 13 12 11 24 24 H 0.96996 * 120.00086 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.01895 * 359.96066 * 10 9 7 26 26 H 1.07998 * 119.85139 * 179.71781 * 12 11 10 27 27 H 1.08004 * 120.05362 * 359.96583 * 15 14 13 28 28 H 1.07995 * 119.93111 * 180.02562 * 16 15 14 29 29 H 1.09005 * 109.46587 * 120.00127 * 18 17 16 30 30 H 1.09001 * 109.47065 * 239.99473 * 18 17 16 31 31 H 0.96694 * 114.00014 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.07195 * 180.27768 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6964 -1.2124 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6964 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0826 -1.2157 0.1033 9 6 1.3073 -2.4332 -0.1332 10 6 2.0148 -3.6440 -0.2652 11 7 1.3578 -4.7811 -0.3838 12 6 0.0358 -4.7896 -0.3906 13 6 -0.6789 -3.5928 -0.2602 14 6 -2.1618 -3.6112 -0.2620 15 6 -2.8464 -4.8254 -0.2885 16 6 -4.2263 -4.8371 -0.2895 17 6 -4.9310 -3.6470 -0.2648 18 6 -6.4379 -3.6668 -0.2655 19 8 -6.8965 -5.0198 -0.2944 20 6 -4.2571 -2.4381 -0.2385 21 17 -5.1492 -0.9491 -0.2083 22 6 -2.8759 -2.4149 -0.2313 23 7 -0.0308 -2.4435 -0.1346 24 1 -0.4850 0.8400 -0.0004 25 1 3.0948 -3.6415 -0.2650 26 1 -0.4953 -5.7244 -0.4927 27 1 -2.2976 -5.7554 -0.3083 28 1 -4.7571 -5.7774 -0.3096 29 1 -6.8080 -3.1763 0.6349 30 1 -6.8077 -3.1392 -1.1447 31 1 -7.8594 -5.1088 -0.2961 32 1 -2.3506 -1.4716 -0.2062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243817387.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = -15.547998 kcal Electronic energy + Delta-G solvation = -19652.204187 eV Core-core repulsion = 16409.302558 eV Total energy + Delta-G solvation = -3242.901629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.17186 -40.13182 -37.60515 -37.45866 -35.96104 -34.44966 -33.18999 -31.75609 -31.20718 -28.20525 -27.02136 -24.58650 -24.04510 -23.11688 -21.85327 -19.53574 -18.53209 -17.94772 -17.42986 -17.19315 -16.76592 -16.26693 -16.03938 -15.67209 -15.36246 -15.08868 -14.68069 -14.60456 -14.07869 -13.57396 -13.33338 -13.19713 -13.01904 -12.74174 -12.59899 -12.49038 -12.11044 -12.03240 -11.74311 -11.71327 -11.49309 -11.37399 -10.97252 -10.16462 -9.76889 -9.40314 -9.10214 -8.41967 -6.68280 -0.29584 0.26819 0.83478 1.08530 1.14930 1.40639 1.52856 1.54785 2.17852 2.56615 2.87242 3.19409 3.47859 3.79898 3.82199 4.00434 4.11876 4.22987 4.29834 4.38818 4.50736 4.52244 4.67257 4.73264 4.95280 4.99504 5.11614 5.16944 5.30275 5.37039 5.61615 5.70373 5.84700 6.09533 6.45842 6.68464 6.94412 7.25545 7.83496 8.28110 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017142 B = 0.005251 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.053046 B = 5331.440900 C = 6946.345610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.024 3.976 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.436 4.436 8 H 0.104 0.896 9 C 0.177 3.823 10 C -0.081 4.081 11 N -0.437 5.437 12 C -0.114 4.114 13 C 0.124 3.876 14 C -0.038 4.038 15 C -0.097 4.097 16 C -0.088 4.088 17 C -0.086 4.086 18 C 0.126 3.874 19 O -0.579 6.579 20 C -0.044 4.044 21 Cl -0.064 7.064 22 C -0.086 4.086 23 N -0.470 5.470 24 H 0.285 0.715 25 H 0.151 0.849 26 H 0.161 0.839 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.405 0.595 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 -1.865 -0.355 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.199 4.199 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.468 4.468 8 H 0.122 0.878 9 C 0.050 3.950 10 C -0.250 4.250 11 N -0.149 5.149 12 C -0.273 4.273 13 C -0.023 4.023 14 C -0.039 4.039 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.087 4.087 18 C 0.049 3.951 19 O -0.388 6.388 20 C -0.071 4.071 21 Cl -0.035 7.035 22 C -0.106 4.106 23 N -0.188 5.188 24 H 0.095 0.905 25 H 0.168 0.832 26 H 0.178 0.822 27 H 0.167 0.833 28 H 0.181 0.819 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.256 0.744 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.097 -1.713 -0.338 13.213 hybrid contribution 0.084 1.054 0.013 1.057 sum -13.013 -0.660 -0.325 13.034 Atomic orbital electron populations 1.70117 1.09036 1.29945 1.27088 1.27065 0.95765 1.04727 0.92391 0.85097 0.78592 0.74833 0.80325 1.18171 1.19354 1.17913 1.20057 0.95912 0.89770 1.41016 0.87780 1.19822 0.89286 0.94647 0.91210 1.23459 1.00214 0.89202 1.12100 1.67710 1.09482 1.29932 1.07766 1.23003 0.90487 0.98107 1.15665 1.21129 0.94081 0.91614 0.95491 1.18680 0.90168 0.93824 1.01265 1.21573 0.94828 0.97129 0.98063 1.21028 0.92392 0.98667 0.98509 1.19913 0.96943 0.91139 1.00721 1.20799 0.88237 0.84288 1.01815 1.86364 1.29476 1.25185 1.97793 1.20547 0.91467 0.87217 1.07820 1.98328 1.74722 1.33513 1.96957 1.21304 0.91981 0.99755 0.97538 1.69516 1.08402 1.24521 1.16358 0.90459 0.83164 0.82189 0.83322 0.81946 0.90680 0.90645 0.74386 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.85 11.51 21.84 0.25 -37.60 16 2 C 0.02 1.18 5.49 85.30 0.47 1.64 16 3 Si 0.99 35.94 29.56 68.60 2.03 37.97 16 4 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 5 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 7 C -0.44 -22.49 9.15 23.47 0.21 -22.28 16 8 H 0.10 4.87 7.85 -2.91 -0.02 4.84 16 9 C 0.18 9.67 6.54 40.24 0.26 9.94 16 10 C -0.08 -4.12 10.98 85.33 0.94 -3.18 16 11 N -0.44 -21.81 10.47 -192.06 -2.01 -23.82 16 12 C -0.11 -5.34 10.61 85.06 0.90 -4.44 16 13 C 0.12 6.11 6.73 42.14 0.28 6.39 16 14 C -0.04 -1.57 5.87 -20.05 -0.12 -1.69 16 15 C -0.10 -3.19 9.42 22.50 0.21 -2.98 16 16 C -0.09 -2.49 9.36 22.23 0.21 -2.28 16 17 C -0.09 -2.42 5.89 -19.80 -0.12 -2.54 16 18 C 0.13 2.48 6.40 71.24 0.46 2.94 16 19 O -0.58 -9.74 12.12 -148.98 -1.81 -11.55 16 20 C -0.04 -1.46 6.31 22.29 0.14 -1.32 16 21 Cl -0.06 -1.85 27.97 -2.72 -0.08 -1.93 16 22 C -0.09 -3.55 9.36 22.52 0.21 -3.33 16 23 N -0.47 -25.86 7.18 -177.66 -1.27 -27.13 16 24 H 0.28 13.18 8.29 -92.71 -0.77 12.41 16 25 H 0.15 6.87 8.06 -2.91 -0.02 6.85 16 26 H 0.16 6.23 6.22 -2.91 -0.02 6.21 16 27 H 0.15 4.26 6.22 -2.91 -0.02 4.24 16 28 H 0.16 3.82 6.99 -2.91 -0.02 3.80 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.40 2.53 9.12 -74.06 -0.68 1.85 16 32 H 0.13 6.22 7.56 -2.91 -0.02 6.20 16 Total: -1.00 -65.05 298.82 1.69 -63.36 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.51 Total: 23.81 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.06 Total: -23.12 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -3.03 Total: -88.55 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.81 Total: -11.55 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -65.05 1.69 -63.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243817387.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.816 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds