Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86792 * 120.00051 * 2 1 4 4 H 1.48509 * 109.47142 * 270.00000 * 3 2 1 5 5 H 1.48499 * 109.47120 * 29.99995 * 3 2 1 6 6 H 1.48498 * 109.47079 * 150.00431 * 3 2 1 7 7 C 1.38644 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 0.02562 * 7 2 1 9 9 O 1.34810 * 120.00028 * 179.97438 * 7 2 1 10 10 C 1.35678 * 116.99947 * 185.06432 * 9 7 2 11 11 C 1.38734 * 120.13684 * 354.40453 * 10 9 7 12 12 C 1.38125 * 120.05110 * 179.97438 * 11 10 9 13 13 C 1.38440 * 120.32981 * 0.02562 * 12 11 10 14 14 C 1.38019 * 120.27383 * 0.02562 * 13 12 11 15 15 C 1.39309 * 119.93691 * 359.97438 * 14 13 12 16 16 C 1.48227 * 120.16177 * 180.02562 * 15 14 13 17 17 C 1.39879 * 120.16139 * 90.01730 * 16 15 14 18 18 O 1.35852 * 120.11004 * 359.97438 * 17 16 15 19 19 C 1.38519 * 119.77357 * 180.02562 * 17 16 15 20 20 C 1.38256 * 120.09182 * 0.02562 * 19 17 16 21 21 C 1.38319 * 120.32966 * 0.02562 * 20 19 17 22 22 C 1.38174 * 120.22644 * 359.71366 * 21 20 19 23 23 Cl 1.73603 * 120.04931 * 180.30545 * 22 21 20 24 24 H 0.96994 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97535 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.83671 * 179.74312 * 12 11 10 27 27 H 1.07997 * 119.86515 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.03042 * 180.02562 * 14 13 12 29 29 H 0.96701 * 113.99977 * 90.00203 * 18 17 16 30 30 H 1.07997 * 119.95121 * 180.02562 * 19 17 16 31 31 H 1.08005 * 119.83336 * 180.02562 * 20 19 17 32 32 H 1.08004 * 119.88936 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4002 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.6999 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3570 -1.2008 0.0000 10 6 3.9729 -2.4050 -0.1061 11 6 3.2251 -3.5735 -0.0912 12 6 3.8539 -4.7985 -0.1999 13 6 5.2309 -4.8690 -0.3237 14 6 5.9881 -3.7151 -0.3390 15 6 5.3656 -2.4736 -0.2301 16 6 6.1739 -1.2312 -0.2466 17 6 6.4513 -0.5893 -1.4581 18 8 5.9812 -1.1027 -2.6247 19 6 7.2079 0.5710 -1.4642 20 6 7.6874 1.0922 -0.2768 21 6 7.4164 0.4601 0.9233 22 6 6.6586 -0.6950 0.9455 23 17 6.3146 -1.4801 2.4552 24 1 -0.4850 0.8400 0.0004 25 1 2.1505 -3.5253 0.0056 26 1 3.2687 -5.7062 -0.1837 27 1 5.7148 -5.8308 -0.4077 28 1 7.0621 -3.7747 -0.4362 29 1 5.1084 -0.7713 -2.8768 30 1 7.4235 1.0692 -2.3978 31 1 8.2766 1.9973 -0.2864 32 1 7.7942 0.8737 1.8467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244046709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = -23.692600 kcal Electronic energy + Delta-G solvation = -20618.902638 eV Core-core repulsion = 17343.355082 eV Total energy + Delta-G solvation = -3275.547557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93368 -38.71871 -36.74893 -36.49840 -35.72940 -32.52075 -32.09251 -29.73684 -29.30939 -28.22995 -25.28966 -23.22261 -22.34324 -21.38868 -20.73602 -18.25318 -17.87324 -17.33489 -16.18459 -15.80167 -15.35248 -14.84378 -14.68766 -14.12505 -13.90660 -13.77740 -13.74180 -13.09602 -12.80410 -12.38987 -12.27821 -12.21236 -11.83817 -11.37154 -11.07633 -11.05434 -10.85177 -10.80233 -10.55549 -10.41572 -10.15931 -9.44915 -8.92536 -8.46100 -8.43474 -8.19150 -7.40383 -6.46554 -4.13055 1.29801 1.34254 1.98373 2.27095 2.43935 3.15641 3.19810 3.36905 3.64438 4.18407 4.41630 4.47320 4.76525 4.91248 5.02978 5.04073 5.32833 5.41793 5.57861 5.69054 5.78344 5.86669 6.02165 6.19793 6.29697 6.37936 6.49589 6.53790 6.70263 6.77425 7.05526 7.13900 7.26765 7.56653 7.74629 7.88560 7.98650 8.88841 9.50811 10.61074 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.009133 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.053280 B = 3065.044209 C = 4004.644525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.210 6.210 10 C 0.178 3.822 11 C -0.221 4.221 12 C -0.069 4.069 13 C -0.204 4.204 14 C -0.049 4.049 15 C -0.127 4.127 16 C -0.026 4.026 17 C 0.132 3.868 18 O -0.490 6.490 19 C -0.148 4.148 20 C -0.101 4.101 21 C -0.127 4.127 22 C -0.006 4.006 23 Cl -0.059 7.059 24 H 0.279 0.721 25 H 0.135 0.865 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.396 0.604 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 -0.413 -0.643 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.115 6.115 10 C 0.126 3.874 11 C -0.240 4.240 12 C -0.088 4.088 13 C -0.223 4.223 14 C -0.067 4.067 15 C -0.129 4.129 16 C -0.028 4.028 17 C 0.087 3.913 18 O -0.300 6.300 19 C -0.166 4.166 20 C -0.119 4.119 21 C -0.145 4.145 22 C -0.033 4.033 23 Cl -0.030 7.030 24 H 0.090 0.910 25 H 0.152 0.848 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.253 0.747 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.562 -0.413 -0.485 13.576 hybrid contribution -0.489 0.857 0.135 0.996 sum 13.073 0.444 -0.350 13.085 Atomic orbital electron populations 1.69642 1.05517 1.28466 1.47907 1.24406 0.94935 0.98584 0.95693 0.86319 0.80796 0.81841 0.79008 1.19907 1.20688 1.17976 1.20752 0.76844 0.96595 1.52232 0.87593 1.83565 1.22521 1.25449 1.79933 1.18961 0.90229 0.85712 0.92513 1.21207 1.01096 0.91741 1.09986 1.20866 0.94317 0.96713 0.96865 1.20557 0.93946 0.97209 1.10613 1.20590 0.98396 0.90726 0.97035 1.17447 0.89724 0.91541 1.14157 1.18860 0.97201 0.95930 0.90771 1.18368 0.96426 0.91705 0.84843 1.84701 1.39067 1.69845 1.36425 1.21400 1.00621 0.95557 0.99056 1.20888 1.00024 0.99704 0.91331 1.20951 0.99744 0.94738 0.99109 1.20940 1.00032 0.95323 0.86973 1.98361 1.94046 1.80241 1.30383 0.91036 0.84779 0.87156 0.87248 0.87053 0.74734 0.85071 0.85039 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 13.96 55.48 0.77 -24.11 16 2 C 0.07 1.84 5.49 -17.51 -0.10 1.75 16 3 Si 0.90 21.24 28.62 -169.99 -4.86 16.38 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.39 -10.60 9.95 30.88 0.31 -10.29 16 8 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 9 O -0.21 -5.32 8.04 0.33 0.00 -5.32 16 10 C 0.18 4.02 6.65 -38.74 -0.26 3.76 16 11 C -0.22 -4.71 9.16 -39.44 -0.36 -5.07 16 12 C -0.07 -1.25 10.03 -39.55 -0.40 -1.65 16 13 C -0.20 -3.47 10.03 -39.59 -0.40 -3.87 16 14 C -0.05 -0.88 9.78 -39.26 -0.38 -1.27 16 15 C -0.13 -2.54 3.90 -104.74 -0.41 -2.95 16 16 C -0.03 -0.50 4.85 -104.74 -0.51 -1.00 16 17 C 0.13 2.27 6.71 -38.86 -0.26 2.01 16 18 O -0.49 -8.12 12.95 -19.27 -0.25 -8.37 16 19 C -0.15 -2.13 9.98 -39.47 -0.39 -2.52 16 20 C -0.10 -1.33 10.03 -39.55 -0.40 -1.73 16 21 C -0.13 -1.86 9.81 -39.58 -0.39 -2.25 16 22 C -0.01 -0.10 6.34 -39.17 -0.25 -0.35 16 23 Cl -0.06 -1.04 28.03 -51.86 -1.45 -2.49 16 24 H 0.28 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.13 2.98 5.64 -52.49 -0.30 2.68 16 26 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 27 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 28 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.40 5.65 9.06 45.56 0.41 6.06 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -29.96 302.43 -7.26 -37.22 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -1.84 Total: 7.57 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -4.19 Total: -25.43 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.77 Total: -24.11 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.25 Total: -13.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.86 Total: 16.38 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.45 Total: -2.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.96 -7.26 -37.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244046709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.528 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds