Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86792 * 120.00051 * 2 1 4 4 H 1.48509 * 109.47142 * 270.00000 * 3 2 1 5 5 H 1.48499 * 109.47120 * 29.99995 * 3 2 1 6 6 H 1.48498 * 109.47079 * 150.00431 * 3 2 1 7 7 C 1.38644 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00014 * 0.02562 * 7 2 1 9 9 O 1.34810 * 120.00028 * 179.97438 * 7 2 1 10 10 C 1.35678 * 116.99947 * 185.06432 * 9 7 2 11 11 C 1.38734 * 120.13684 * 354.40453 * 10 9 7 12 12 C 1.38125 * 120.05110 * 179.97438 * 11 10 9 13 13 C 1.38440 * 120.32981 * 0.02562 * 12 11 10 14 14 C 1.38019 * 120.27383 * 0.02562 * 13 12 11 15 15 C 1.39309 * 119.93691 * 359.97438 * 14 13 12 16 16 C 1.48227 * 120.16177 * 180.02562 * 15 14 13 17 17 C 1.39879 * 120.16139 * 90.01730 * 16 15 14 18 18 O 1.35852 * 120.11004 * 359.97438 * 17 16 15 19 19 C 1.38519 * 119.77357 * 180.02562 * 17 16 15 20 20 C 1.38256 * 120.09182 * 0.02562 * 19 17 16 21 21 C 1.38319 * 120.32966 * 0.02562 * 20 19 17 22 22 C 1.38174 * 120.22644 * 359.71366 * 21 20 19 23 23 Cl 1.73603 * 120.04931 * 180.30545 * 22 21 20 24 24 H 0.96994 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.97535 * 359.97438 * 11 10 9 26 26 H 1.08002 * 119.83671 * 179.74312 * 12 11 10 27 27 H 1.07997 * 119.86515 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.03042 * 180.02562 * 14 13 12 29 29 H 0.96701 * 113.99977 * 90.00203 * 18 17 16 30 30 H 1.07997 * 119.95121 * 180.02562 * 19 17 16 31 31 H 1.08005 * 119.83336 * 180.02562 * 20 19 17 32 32 H 1.08004 * 119.88936 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4002 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.6999 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3570 -1.2008 0.0000 10 6 3.9729 -2.4050 -0.1061 11 6 3.2251 -3.5735 -0.0912 12 6 3.8539 -4.7985 -0.1999 13 6 5.2309 -4.8690 -0.3237 14 6 5.9881 -3.7151 -0.3390 15 6 5.3656 -2.4736 -0.2301 16 6 6.1739 -1.2312 -0.2466 17 6 6.4513 -0.5893 -1.4581 18 8 5.9812 -1.1027 -2.6247 19 6 7.2079 0.5710 -1.4642 20 6 7.6874 1.0922 -0.2768 21 6 7.4164 0.4601 0.9233 22 6 6.6586 -0.6950 0.9455 23 17 6.3146 -1.4801 2.4552 24 1 -0.4850 0.8400 0.0004 25 1 2.1505 -3.5253 0.0056 26 1 3.2687 -5.7062 -0.1837 27 1 5.7148 -5.8308 -0.4077 28 1 7.0621 -3.7747 -0.4362 29 1 5.1084 -0.7713 -2.8768 30 1 7.4235 1.0692 -2.3978 31 1 8.2766 1.9973 -0.2864 32 1 7.7942 0.8737 1.8467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244046709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = -41.820407 kcal Electronic energy + Delta-G solvation = -20619.688719 eV Core-core repulsion = 17343.355082 eV Total energy + Delta-G solvation = -3276.333638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.33714 -40.19749 -38.16639 -37.97215 -36.97574 -34.46988 -33.51596 -30.97874 -30.80862 -29.63514 -27.22040 -24.55161 -23.53661 -23.03044 -22.15078 -19.80703 -19.49584 -18.92818 -17.51523 -17.05182 -16.76744 -16.43066 -16.14936 -15.56627 -15.51408 -15.33410 -15.31137 -14.40448 -14.35545 -14.10883 -13.93805 -13.51187 -13.16023 -12.84919 -12.63053 -12.50621 -12.41198 -12.25144 -12.09791 -11.84332 -11.63085 -11.24696 -10.91640 -9.71125 -9.69384 -9.62255 -9.05910 -8.49998 -6.20853 0.11258 0.14850 0.46376 0.70136 1.16797 1.27850 1.30808 1.49180 2.25631 2.47900 2.76405 3.03384 3.12172 3.29356 3.62960 4.00466 4.15207 4.19967 4.24632 4.34431 4.49148 4.62563 4.66079 4.75961 4.92368 5.08563 5.22708 5.29058 5.35339 5.41157 5.58413 5.68437 5.71550 5.77799 5.89963 6.22821 6.68487 6.85252 7.60063 8.61742 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012024 B = 0.009133 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.053280 B = 3065.044209 C = 4004.644525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.392 4.392 8 H 0.080 0.920 9 O -0.231 6.231 10 C 0.145 3.855 11 C -0.241 4.241 12 C -0.072 4.072 13 C -0.181 4.181 14 C -0.058 4.058 15 C -0.115 4.115 16 C -0.062 4.062 17 C 0.112 3.888 18 O -0.498 6.498 19 C -0.144 4.144 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.027 4.027 23 Cl -0.072 7.072 24 H 0.283 0.717 25 H 0.111 0.889 26 H 0.141 0.859 27 H 0.151 0.849 28 H 0.135 0.865 29 H 0.401 0.599 30 H 0.160 0.840 31 H 0.177 0.823 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.389 0.130 -1.145 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.098 0.902 9 O -0.138 6.138 10 C 0.096 3.904 11 C -0.260 4.260 12 C -0.090 4.090 13 C -0.200 4.200 14 C -0.076 4.076 15 C -0.117 4.117 16 C -0.064 4.064 17 C 0.067 3.933 18 O -0.310 6.310 19 C -0.163 4.163 20 C -0.105 4.105 21 C -0.146 4.146 22 C -0.054 4.054 23 Cl -0.043 7.043 24 H 0.093 0.907 25 H 0.129 0.871 26 H 0.159 0.841 27 H 0.169 0.831 28 H 0.153 0.847 29 H 0.259 0.741 30 H 0.178 0.822 31 H 0.194 0.806 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.772 0.093 -0.996 16.802 hybrid contribution -1.262 0.455 0.261 1.367 sum 15.510 0.548 -0.735 15.537 Atomic orbital electron populations 1.69728 1.06829 1.29399 1.50378 1.25127 0.95676 1.01648 0.95728 0.85392 0.78972 0.78090 0.79564 1.18406 1.19714 1.18873 1.20662 0.78157 0.95924 1.52120 0.90211 1.83521 1.20906 1.26827 1.82518 1.19407 0.91532 0.85280 0.94205 1.21280 1.00283 0.93229 1.11225 1.21199 0.95340 0.96432 0.96007 1.21073 0.93329 0.98741 1.06819 1.21018 0.99794 0.90346 0.96484 1.17738 0.88692 0.93313 1.11930 1.19012 0.98772 0.96436 0.92140 1.18646 0.97466 0.92856 0.84325 1.84667 1.39546 1.70381 1.36391 1.21773 0.99217 0.94349 1.00934 1.21427 0.98728 1.00352 0.90007 1.21359 0.98675 0.93570 1.01033 1.21182 1.01414 0.96589 0.86178 1.98348 1.94279 1.80667 1.31000 0.90705 0.87087 0.84108 0.83136 0.84701 0.74118 0.82240 0.80603 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 13.96 21.61 0.30 -54.19 16 2 C 0.02 0.95 5.49 84.83 0.47 1.42 16 3 Si 0.96 44.65 28.62 68.60 1.96 46.61 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.39 -22.56 9.95 67.92 0.68 -21.89 16 8 H 0.08 4.85 5.44 -2.91 -0.02 4.83 16 9 O -0.23 -12.14 8.04 -21.74 -0.17 -12.32 16 10 C 0.15 6.73 6.65 22.81 0.15 6.89 16 11 C -0.24 -10.59 9.16 22.36 0.20 -10.39 16 12 C -0.07 -2.50 10.03 22.29 0.22 -2.27 16 13 C -0.18 -5.62 10.03 22.27 0.22 -5.40 16 14 C -0.06 -1.98 9.78 22.48 0.22 -1.76 16 15 C -0.12 -4.56 3.90 -19.94 -0.08 -4.64 16 16 C -0.06 -2.29 4.85 -19.94 -0.10 -2.38 16 17 C 0.11 3.68 6.71 22.73 0.15 3.83 16 18 O -0.50 -16.08 12.95 -91.88 -1.19 -17.27 16 19 C -0.14 -3.67 9.98 22.34 0.22 -3.44 16 20 C -0.09 -1.93 10.03 22.29 0.22 -1.70 16 21 C -0.13 -3.37 9.81 22.27 0.22 -3.16 16 22 C -0.03 -0.91 6.34 22.54 0.14 -0.77 16 23 Cl -0.07 -2.48 28.03 -2.72 -0.08 -2.55 16 24 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 25 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16 26 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 27 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 28 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 29 H 0.40 11.46 9.06 -74.06 -0.67 10.79 16 30 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -68.03 302.43 4.28 -63.75 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.51 Total: 21.64 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 2.95 Total: -45.67 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.30 Total: -54.19 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.36 Total: -29.59 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.96 Total: 46.61 kcal Atomic # 17 Polarization: -2.48 SS G_CDS: -0.08 Total: -2.55 kcal Total: -68.03 4.28 -63.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244046709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.930 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds