Wall clock time and date at job start Tue Mar 31 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86806 * 119.99449 * 2 1 4 4 H 1.48498 * 109.46983 * 239.99843 * 3 2 1 5 5 H 1.48501 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46913 * 120.00078 * 3 2 1 7 7 C 1.38638 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99892 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00003 * 0.02562 * 7 2 1 10 10 C 1.35723 * 117.00321 * 174.89659 * 9 7 2 11 11 C 1.39458 * 120.37199 * 5.89905 * 10 9 7 12 12 C 1.38188 * 118.45953 * 179.70796 * 11 10 9 13 13 C 1.39509 * 119.14405 * 0.52866 * 12 11 10 14 14 C 1.48131 * 119.66036 * 179.72954 * 13 12 11 15 15 C 1.39384 * 120.15558 * 354.93921 * 14 13 12 16 16 C 1.37943 * 119.95883 * 180.23042 * 15 14 13 17 17 C 1.38579 * 120.27315 * 359.49009 * 16 15 14 18 18 Cl 1.73606 * 119.83866 * 180.25643 * 17 16 15 19 19 C 1.38231 * 120.32139 * 0.51135 * 17 16 15 20 20 C 1.38772 * 120.03570 * 359.74581 * 19 17 16 21 21 N 1.39371 * 120.13968 * 179.97438 * 20 19 17 22 22 N 1.32735 * 120.67707 * 359.46242 * 13 12 11 23 23 C 1.31691 * 121.67277 * 0.26691 * 22 13 12 24 24 H 0.96991 * 120.00472 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.77348 * 0.02562 * 11 10 9 26 26 H 1.08008 * 120.42444 * 180.28260 * 12 11 10 27 27 H 1.07993 * 120.02355 * 359.94740 * 15 14 13 28 28 H 1.07992 * 119.86149 * 179.72059 * 16 15 14 29 29 H 1.07998 * 119.98297 * 179.77035 * 19 17 16 30 30 H 0.96999 * 119.99556 * 213.49250 * 21 20 19 31 31 H 0.96992 * 120.00363 * 33.49391 * 21 20 19 32 32 H 1.08006 * 119.60006 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3350 -2.3681 0.0005 10 6 2.0701 -3.5040 -0.1065 11 6 3.4634 -3.4467 -0.0870 12 6 4.1726 -4.6279 -0.1926 13 6 3.4758 -5.8292 -0.3256 14 6 4.2246 -7.1016 -0.4458 15 6 5.6158 -7.0899 -0.5321 16 6 6.3087 -8.2769 -0.6487 17 6 5.6283 -9.4840 -0.6698 18 17 6.5122 -10.9715 -0.8102 19 6 4.2488 -9.5090 -0.5850 20 6 3.5381 -8.3223 -0.4726 21 7 2.1472 -8.3449 -0.3875 22 7 2.1486 -5.8442 -0.3403 23 6 1.4434 -4.7369 -0.2362 24 1 -0.4850 0.8399 0.0004 25 1 3.9762 -2.5016 0.0135 26 1 5.2526 -4.6209 -0.1765 27 1 6.1505 -6.1519 -0.5124 28 1 7.3862 -8.2657 -0.7200 29 1 3.7238 -10.4525 -0.6057 30 1 1.6257 -7.6270 -0.7790 31 1 1.7008 -9.0786 0.0633 32 1 0.3647 -4.7880 -0.2516 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244199476.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:44 Heat of formation + Delta-G solvation = 15.918637 kcal Electronic energy + Delta-G solvation = -19272.513278 eV Core-core repulsion = 16030.976144 eV Total energy + Delta-G solvation = -3241.537134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51655 -40.23579 -38.77391 -37.41384 -35.25628 -34.44145 -33.24338 -32.59970 -30.19867 -29.14892 -27.37716 -24.86934 -24.40412 -22.81907 -22.30225 -20.06285 -19.08252 -18.21210 -17.80333 -17.45312 -16.87882 -16.31274 -15.91882 -15.81823 -15.51967 -15.36432 -14.94735 -14.58767 -14.55310 -14.07800 -13.94104 -13.60103 -13.36867 -12.79943 -12.65002 -12.57884 -12.38193 -12.19506 -11.82296 -11.67132 -11.08874 -10.94732 -10.59717 -10.35637 -10.05439 -9.08687 -8.52844 -8.29273 -6.19362 -0.24852 0.36245 0.56664 0.85193 1.19515 1.36716 1.47056 1.52476 2.14152 2.60853 2.93617 3.11854 3.24318 3.32268 3.51933 3.74066 4.01946 4.05802 4.22095 4.30047 4.47725 4.56289 4.65994 4.82402 4.93748 5.00461 5.17930 5.28592 5.35185 5.41019 5.57319 5.69994 5.87589 5.93658 6.82635 6.90250 7.01496 7.25034 7.63821 8.68534 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.041327 B = 0.003077 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.356283 B = 9096.969119 C = 9758.594495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.016 4.016 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.107 0.893 9 O -0.211 6.211 10 C 0.073 3.927 11 C -0.193 4.193 12 C -0.104 4.104 13 C 0.076 3.924 14 C -0.109 4.109 15 C -0.059 4.059 16 C -0.161 4.161 17 C 0.002 3.998 18 Cl -0.070 7.070 19 C -0.187 4.187 20 C 0.234 3.766 21 N -0.868 5.868 22 N -0.438 5.438 23 C 0.027 3.973 24 H 0.275 0.725 25 H 0.142 0.858 26 H 0.164 0.836 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.411 0.589 31 H 0.398 0.602 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.238 -14.957 -1.127 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.493 4.493 8 H 0.124 0.876 9 O -0.115 6.115 10 C 0.019 3.981 11 C -0.219 4.219 12 C -0.123 4.123 13 C -0.060 4.060 14 C -0.114 4.114 15 C -0.078 4.078 16 C -0.181 4.181 17 C -0.026 4.026 18 Cl -0.041 7.041 19 C -0.210 4.210 20 C 0.125 3.875 21 N -0.416 5.416 22 N -0.149 5.149 23 C -0.133 4.133 24 H 0.085 0.915 25 H 0.160 0.840 26 H 0.182 0.818 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.250 0.750 31 H 0.227 0.773 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.441 -15.642 -1.216 19.418 hybrid contribution -0.079 1.508 0.200 1.523 sum 11.362 -14.134 -1.016 18.163 Atomic orbital electron populations 1.70161 1.08062 1.29248 1.47450 1.26594 0.96805 1.02759 0.95400 0.84650 0.77449 0.74134 0.80077 1.18024 1.19831 1.17984 1.21836 0.92760 0.81104 1.53605 0.87561 1.83943 1.35551 1.12320 1.79727 1.20909 0.92283 0.89204 0.95717 1.21703 0.93139 1.00352 1.06729 1.22056 1.01945 0.90681 0.97638 1.19609 0.88994 0.92825 1.04600 1.18483 0.93310 0.89948 1.09680 1.21165 0.91490 0.99154 0.96028 1.20914 1.01216 0.89701 1.06303 1.20840 0.91810 0.87507 1.02457 1.98357 1.75698 1.33818 1.96253 1.20736 0.92510 0.98021 1.09731 1.17706 0.85665 0.91624 0.92457 1.42952 1.02563 1.30895 1.65198 1.67017 1.07893 1.28076 1.11901 1.21907 1.00264 0.85356 1.05819 0.91550 0.84036 0.81847 0.82963 0.82964 0.83936 0.75050 0.77299 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.15 13.67 21.61 0.30 -52.86 16 2 C -0.02 -0.88 5.49 84.83 0.47 -0.41 16 3 Si 1.02 40.03 29.55 68.60 2.03 42.05 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 7 C -0.42 -22.56 9.49 67.92 0.64 -21.92 16 8 H 0.11 5.15 5.25 -2.91 -0.02 5.14 16 9 O -0.21 -11.80 9.76 -22.18 -0.22 -12.02 16 10 C 0.07 3.37 6.67 22.73 0.15 3.52 16 11 C -0.19 -7.67 9.25 22.55 0.21 -7.46 16 12 C -0.10 -3.39 9.45 22.56 0.21 -3.17 16 13 C 0.08 2.55 6.72 41.94 0.28 2.83 16 14 C -0.11 -3.09 5.89 -19.93 -0.12 -3.20 16 15 C -0.06 -1.32 9.41 22.48 0.21 -1.11 16 16 C -0.16 -3.24 9.81 22.28 0.22 -3.02 16 17 C 0.00 0.03 6.32 22.35 0.14 0.17 16 18 Cl -0.07 -1.32 28.94 -2.72 -0.08 -1.39 16 19 C -0.19 -4.24 9.73 22.40 0.22 -4.02 16 20 C 0.23 6.22 6.75 38.52 0.26 6.48 16 21 N -0.87 -21.98 8.29 -50.92 -0.42 -22.41 16 22 N -0.44 -15.95 6.75 -184.39 -1.24 -17.20 16 23 C 0.03 1.11 11.14 84.88 0.95 2.05 16 24 H 0.28 14.74 8.31 -92.72 -0.77 13.97 16 25 H 0.14 5.44 5.75 -2.92 -0.02 5.43 16 26 H 0.16 3.91 6.22 -2.91 -0.02 3.89 16 27 H 0.15 2.70 6.20 -2.91 -0.02 2.68 16 28 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.41 11.73 6.04 -92.71 -0.56 11.17 16 31 H 0.40 7.99 8.94 -92.71 -0.83 7.16 16 32 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 Total: -1.00 -63.74 295.30 4.03 -59.71 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.18 Total: 33.35 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.84 Total: -29.25 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -1.37 Total: -92.46 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.22 Total: -12.02 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -63.74 4.03 -59.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244199476.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.633 kcal (2) G-P(sol) polarization free energy of solvation -63.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds