Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37743 * 119.94747 * 2 1 4 4 C 1.39793 * 119.92605 * 180.02562 * 3 2 1 5 5 C 1.47640 * 120.08995 * 180.02562 * 4 3 2 6 6 N 1.32927 * 120.25526 * 226.02855 * 5 4 3 7 7 C 1.31987 * 120.07251 * 180.28108 * 6 5 4 8 8 C 1.39208 * 120.59900 * 359.70763 * 7 6 5 9 9 N 1.31594 * 120.52250 * 359.97438 * 8 7 6 10 10 C 1.33986 * 119.90324 * 0.02562 * 9 8 7 11 11 C 1.40734 * 120.29492 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00507 * 175.62638 * 11 10 9 13 13 C 1.40154 * 119.99448 * 355.62489 * 11 10 9 14 14 N 1.30696 * 120.00434 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99378 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47368 * 60.00133 * 15 13 11 17 17 H 1.48503 * 109.47091 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47351 * 299.99657 * 15 13 11 19 19 C 1.39840 * 119.81721 * 0.27076 * 4 3 2 20 20 C 1.37774 * 119.88839 * 359.40507 * 19 4 3 21 21 Cl 1.73596 * 119.96448 * 180.31656 * 20 19 4 22 22 C 1.38959 * 119.94219 * 179.97438 * 2 1 3 23 23 O 1.35777 * 119.91076 * 359.97438 * 22 2 1 24 24 H 1.08996 * 109.47347 * 89.99857 * 1 2 3 25 25 H 1.08999 * 109.47143 * 210.00173 * 1 2 3 26 26 H 1.09000 * 109.46673 * 329.99704 * 1 2 3 27 27 H 1.08008 * 120.03914 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.70066 * 179.72505 * 7 6 5 29 29 H 1.08006 * 119.74191 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00085 * 180.02562 * 14 13 11 31 31 H 1.07999 * 120.05549 * 179.70196 * 19 4 3 32 32 H 0.96704 * 113.99917 * 89.99825 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1935 0.0000 4 6 3.5926 1.1930 -0.0005 5 6 4.3333 2.4702 0.0000 6 7 5.3586 2.6501 -0.8266 7 6 6.0217 3.7913 -0.8192 8 6 5.6545 4.8186 0.0455 9 7 4.6394 4.6681 0.8693 10 6 3.9519 3.5181 0.8790 11 6 2.8645 3.3484 1.7562 12 1 2.2699 2.4480 1.7114 13 6 2.5534 4.3480 2.6880 14 7 3.2727 5.4379 2.7420 15 14 1.1106 4.1224 3.8528 16 1 1.3306 2.9122 4.6849 17 1 0.9940 5.3129 4.7328 18 1 -0.1395 3.9625 3.0674 19 6 4.2875 -0.0205 -0.0068 20 6 3.5921 -1.2099 0.0000 21 17 4.4527 -2.7175 0.0005 22 6 2.2006 -1.2041 0.0005 23 8 1.5187 -2.3782 0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6544 2.1288 -0.0004 28 1 6.8566 3.9295 -1.4902 29 1 6.2071 5.7466 0.0403 30 1 3.0575 6.1295 3.3872 31 1 5.3674 -0.0254 -0.0121 32 1 1.3208 -2.7189 -0.8815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244531986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = 9.368294 kcal Electronic energy + Delta-G solvation = -20126.279313 eV Core-core repulsion = 16884.458135 eV Total energy + Delta-G solvation = -3241.821178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.76467 -38.82612 -36.39437 -36.15469 -34.29288 -32.69325 -31.86901 -31.13586 -28.32441 -26.84717 -26.02590 -23.35326 -22.31615 -21.56864 -20.33996 -18.18743 -17.72556 -16.34829 -16.14580 -15.57252 -15.21293 -14.93930 -14.40093 -14.15697 -13.45108 -13.09494 -12.97365 -12.88269 -12.53548 -12.33302 -12.02683 -11.88305 -11.60491 -11.45660 -11.34459 -11.02593 -10.75268 -10.65489 -10.27004 -10.13055 -9.98087 -9.69348 -9.28112 -8.42158 -8.22889 -7.67748 -7.48195 -6.70957 -4.87013 1.37551 1.64261 2.38802 2.46190 2.84353 2.92064 2.94113 3.07726 3.70393 3.97625 4.43499 4.47772 5.07803 5.17511 5.55174 5.59988 5.71742 5.78741 5.81101 5.86848 5.94974 6.05174 6.20640 6.27899 6.39697 6.48232 6.67833 6.78429 6.85965 6.88889 7.11906 7.20132 7.49993 7.82446 7.85700 8.20147 8.46268 9.06152 9.65382 9.91331 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.006542 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.354194 B = 4278.795271 C = 5646.354653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.091 4.091 4 C 0.043 3.957 5 C -0.041 4.041 6 N -0.407 5.407 7 C -0.117 4.117 8 C 0.092 3.908 9 N -0.451 5.451 10 C 0.221 3.779 11 C -0.402 4.402 12 H 0.103 0.897 13 C 0.064 3.936 14 N -0.699 5.699 15 Si 0.909 3.091 16 H -0.259 1.259 17 H -0.273 1.273 18 H -0.258 1.258 19 C -0.094 4.094 20 C -0.055 4.055 21 Cl -0.078 7.078 22 C 0.086 3.914 23 O -0.486 6.486 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.281 0.719 31 H 0.132 0.868 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 -7.184 -3.143 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.110 4.110 4 C 0.042 3.958 5 C -0.187 4.187 6 N -0.120 5.120 7 C -0.279 4.279 8 C -0.080 4.080 9 N -0.167 5.167 10 C 0.097 3.903 11 C -0.432 4.432 12 H 0.121 0.879 13 C -0.164 4.164 14 N -0.318 5.318 15 Si 0.732 3.268 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.183 1.183 19 C -0.113 4.113 20 C -0.082 4.082 21 Cl -0.049 7.049 22 C 0.040 3.960 23 O -0.295 6.295 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.150 0.850 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.179 -7.011 -2.375 8.500 hybrid contribution -0.198 -0.096 0.006 0.220 sum -4.377 -7.107 -2.368 8.676 Atomic orbital electron populations 1.20651 0.90519 1.03208 1.02041 1.19945 0.96487 0.91600 1.02237 1.21336 0.93490 0.97627 0.98545 1.18257 0.91863 0.90896 0.94834 1.19953 1.00053 0.95063 1.03639 1.67700 1.03749 1.22252 1.18251 1.22575 1.05202 0.93003 1.07112 1.23582 0.94512 0.97998 0.91919 1.69573 1.06018 1.21551 1.19564 1.19187 0.92669 0.87205 0.91252 1.19983 1.09159 1.02861 1.11171 0.87945 1.26244 0.97810 0.94459 0.97909 1.70049 1.31608 1.03950 1.26215 0.86315 0.81061 0.79411 0.80040 1.18316 1.19779 1.18258 1.21046 1.00355 0.89416 1.00521 1.21152 0.91324 0.87151 1.08573 1.98321 1.76947 1.32507 1.97132 1.17908 0.87464 0.85411 1.05236 1.84792 1.75844 1.36081 1.32811 0.91549 0.91070 0.91142 0.84046 0.85263 0.85047 0.90732 0.85026 0.76471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.78 36.01 0.35 -1.04 16 2 C -0.10 -1.67 5.89 -104.53 -0.62 -2.28 16 3 C -0.09 -1.72 7.14 -39.18 -0.28 -2.00 16 4 C 0.04 0.92 5.31 -104.88 -0.56 0.36 16 5 C -0.04 -0.99 6.39 -82.12 -0.52 -1.52 16 6 N -0.41 -9.68 10.33 -8.99 -0.09 -9.78 16 7 C -0.12 -2.58 11.22 -17.12 -0.19 -2.77 16 8 C 0.09 2.09 11.22 -17.29 -0.19 1.90 16 9 N -0.45 -11.69 8.05 -10.72 -0.09 -11.78 16 10 C 0.22 5.67 6.53 -84.55 -0.55 5.12 16 11 C -0.40 -9.80 7.92 -37.92 -0.30 -10.10 16 12 H 0.10 2.32 4.76 -52.49 -0.25 2.07 16 13 C 0.06 1.50 5.50 -17.32 -0.10 1.40 16 14 N -0.70 -17.11 11.49 55.56 0.64 -16.47 16 15 Si 0.91 17.10 29.56 -169.99 -5.03 12.08 16 16 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 17 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 18 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 19 C -0.09 -1.83 9.46 -39.15 -0.37 -2.20 16 20 C -0.05 -0.96 6.33 -39.41 -0.25 -1.21 16 21 Cl -0.08 -1.20 28.49 -51.86 -1.48 -2.68 16 22 C 0.09 1.39 6.68 -38.98 -0.26 1.13 16 23 O -0.49 -6.68 11.97 -19.04 -0.23 -6.90 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 26 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 27 H 0.14 2.70 6.74 -52.48 -0.35 2.34 16 28 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 29 H 0.13 2.53 8.06 -52.48 -0.42 2.11 16 30 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 31 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 32 H 0.38 3.52 9.06 45.56 0.41 3.93 16 LS Contribution 297.35 15.07 4.48 4.48 Total: -1.00 -28.44 297.35 -7.45 -35.89 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -1.83 Total: 8.36 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -3.84 Total: -13.20 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.46 Total: -38.02 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.23 Total: -6.90 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.48 Total: -2.68 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.44 -7.45 -35.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244531986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.259 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds