Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37743 * 119.94747 * 2 1 4 4 C 1.39793 * 119.92605 * 180.02562 * 3 2 1 5 5 C 1.47640 * 120.08995 * 180.02562 * 4 3 2 6 6 N 1.32927 * 120.25526 * 226.02855 * 5 4 3 7 7 C 1.31987 * 120.07251 * 180.28108 * 6 5 4 8 8 C 1.39208 * 120.59900 * 359.70763 * 7 6 5 9 9 N 1.31594 * 120.52250 * 359.97438 * 8 7 6 10 10 C 1.33986 * 119.90324 * 0.02562 * 9 8 7 11 11 C 1.40734 * 120.29492 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00507 * 175.62638 * 11 10 9 13 13 C 1.40154 * 119.99448 * 355.62489 * 11 10 9 14 14 N 1.30696 * 120.00434 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99378 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47368 * 60.00133 * 15 13 11 17 17 H 1.48503 * 109.47091 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47351 * 299.99657 * 15 13 11 19 19 C 1.39840 * 119.81721 * 0.27076 * 4 3 2 20 20 C 1.37774 * 119.88839 * 359.40507 * 19 4 3 21 21 Cl 1.73596 * 119.96448 * 180.31656 * 20 19 4 22 22 C 1.38959 * 119.94219 * 179.97438 * 2 1 3 23 23 O 1.35777 * 119.91076 * 359.97438 * 22 2 1 24 24 H 1.08996 * 109.47347 * 89.99857 * 1 2 3 25 25 H 1.08999 * 109.47143 * 210.00173 * 1 2 3 26 26 H 1.09000 * 109.46673 * 329.99704 * 1 2 3 27 27 H 1.08008 * 120.03914 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.70066 * 179.72505 * 7 6 5 29 29 H 1.08006 * 119.74191 * 179.97438 * 8 7 6 30 30 H 0.97001 * 120.00085 * 180.02562 * 14 13 11 31 31 H 1.07999 * 120.05549 * 179.70196 * 19 4 3 32 32 H 0.96704 * 113.99917 * 89.99825 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1935 0.0000 4 6 3.5926 1.1930 -0.0005 5 6 4.3333 2.4702 0.0000 6 7 5.3586 2.6501 -0.8266 7 6 6.0217 3.7913 -0.8192 8 6 5.6545 4.8186 0.0455 9 7 4.6394 4.6681 0.8693 10 6 3.9519 3.5181 0.8790 11 6 2.8645 3.3484 1.7562 12 1 2.2699 2.4480 1.7114 13 6 2.5534 4.3480 2.6880 14 7 3.2727 5.4379 2.7420 15 14 1.1106 4.1224 3.8528 16 1 1.3306 2.9122 4.6849 17 1 0.9940 5.3129 4.7328 18 1 -0.1395 3.9625 3.0674 19 6 4.2875 -0.0205 -0.0068 20 6 3.5921 -1.2099 0.0000 21 17 4.4527 -2.7175 0.0005 22 6 2.2006 -1.2041 0.0005 23 8 1.5187 -2.3782 0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6544 2.1288 -0.0004 28 1 6.8566 3.9295 -1.4902 29 1 6.2071 5.7466 0.0403 30 1 3.0575 6.1295 3.3872 31 1 5.3674 -0.0254 -0.0121 32 1 1.3208 -2.7189 -0.8815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244531986.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -8.559515 kcal Electronic energy + Delta-G solvation = -20127.056721 eV Core-core repulsion = 16884.458135 eV Total energy + Delta-G solvation = -3242.598586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27814 -40.39124 -37.67696 -37.46933 -36.04251 -34.24781 -33.38127 -32.76021 -29.86698 -28.34880 -27.50659 -24.97972 -23.99732 -23.07071 -21.80777 -19.68250 -19.24505 -18.02376 -17.63140 -17.05696 -16.68952 -16.43227 -15.98021 -15.64719 -14.90412 -14.73607 -14.40998 -14.19358 -13.91940 -13.60045 -13.47909 -13.27252 -13.08389 -12.96526 -12.74435 -12.42247 -12.13360 -12.05523 -11.85116 -11.68645 -11.52251 -11.39536 -11.02654 -10.02684 -9.59892 -9.42974 -9.09146 -8.44720 -6.67549 -0.07931 0.23423 0.69892 1.08828 1.15373 1.38637 1.50914 1.53503 2.15055 2.54597 2.74812 3.20058 3.63281 3.72595 3.87116 4.14550 4.25581 4.30915 4.41438 4.43394 4.64763 4.76165 4.82544 4.89496 4.91476 5.06176 5.13928 5.19964 5.29872 5.43509 5.64881 5.75693 5.79429 6.08571 6.43301 6.67174 6.81099 7.27732 7.85870 8.22575 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014280 B = 0.006542 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.354194 B = 4278.795271 C = 5646.354653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C -0.096 4.096 4 C 0.012 3.988 5 C -0.050 4.050 6 N -0.426 5.426 7 C -0.121 4.121 8 C 0.080 3.920 9 N -0.486 5.486 10 C 0.190 3.810 11 C -0.423 4.423 12 H 0.112 0.888 13 C 0.023 3.977 14 N -0.737 5.737 15 Si 0.979 3.021 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.245 1.245 19 C -0.102 4.102 20 C -0.061 4.061 21 Cl -0.060 7.060 22 C 0.104 3.896 23 O -0.484 6.484 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.134 0.866 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.288 0.712 31 H 0.120 0.880 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.147 -8.830 -3.101 11.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.097 4.097 3 C -0.115 4.115 4 C 0.010 3.990 5 C -0.195 4.195 6 N -0.138 5.138 7 C -0.282 4.282 8 C -0.091 4.091 9 N -0.203 5.203 10 C 0.066 3.934 11 C -0.453 4.453 12 H 0.130 0.870 13 C -0.201 4.201 14 N -0.357 5.357 15 Si 0.798 3.202 16 H -0.183 1.183 17 H -0.190 1.190 18 H -0.168 1.168 19 C -0.122 4.122 20 C -0.089 4.089 21 Cl -0.031 7.031 22 C 0.058 3.942 23 O -0.296 6.296 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.152 0.848 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -6.015 -8.672 -2.377 10.818 hybrid contribution 0.423 0.273 -0.105 0.515 sum -5.591 -8.398 -2.482 10.390 Atomic orbital electron populations 1.20740 0.87654 1.03963 1.03785 1.20262 0.98391 0.90542 1.00520 1.21298 0.92640 0.98478 0.99073 1.18288 0.92843 0.90263 0.97581 1.20360 1.00127 0.96052 1.03003 1.67781 1.04334 1.23035 1.18665 1.23108 1.05593 0.92399 1.07112 1.24077 0.94132 0.99381 0.91506 1.69527 1.07361 1.22309 1.21116 1.19635 0.93619 0.87842 0.92340 1.20315 1.09425 1.03825 1.11725 0.86992 1.27148 1.00259 0.93703 0.99031 1.70130 1.33371 1.04914 1.27301 0.85275 0.77834 0.79337 0.77769 1.18336 1.18970 1.16807 1.20916 0.99867 0.89919 1.01487 1.21215 0.92084 0.87248 1.08310 1.98324 1.76778 1.30955 1.97035 1.17907 0.87028 0.86286 1.02990 1.84732 1.75153 1.34764 1.34937 0.89200 0.89771 0.90910 0.84849 0.82084 0.82173 0.90137 0.86213 0.73524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 9.78 71.24 0.70 -1.65 16 2 C -0.10 -2.94 5.89 -19.81 -0.12 -3.06 16 3 C -0.10 -3.60 7.14 22.53 0.16 -3.44 16 4 C 0.01 0.52 5.31 -20.03 -0.11 0.41 16 5 C -0.05 -2.47 6.39 42.39 0.27 -2.20 16 6 N -0.43 -20.73 10.33 -182.34 -1.88 -22.61 16 7 C -0.12 -5.38 11.22 84.90 0.95 -4.43 16 8 C 0.08 3.69 11.22 84.96 0.95 4.64 16 9 N -0.49 -26.05 8.05 -187.83 -1.51 -27.56 16 10 C 0.19 10.10 6.53 40.35 0.26 10.36 16 11 C -0.42 -21.14 7.92 23.35 0.18 -20.95 16 12 H 0.11 5.16 4.76 -2.91 -0.01 5.15 16 13 C 0.02 1.10 5.50 85.33 0.47 1.57 16 14 N -0.74 -36.93 11.49 21.86 0.25 -36.68 16 15 Si 0.98 34.68 29.56 68.60 2.03 36.71 16 16 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 17 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 18 H -0.24 -8.05 7.11 99.48 0.71 -7.35 16 19 C -0.10 -4.01 9.46 22.55 0.21 -3.80 16 20 C -0.06 -2.06 6.33 22.38 0.14 -1.92 16 21 Cl -0.06 -1.74 28.49 -2.72 -0.08 -1.82 16 22 C 0.10 3.12 6.68 22.66 0.15 3.27 16 23 O -0.48 -11.39 11.97 -91.06 -1.09 -12.48 16 24 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 1.70 7.52 -2.39 -0.02 1.68 16 26 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 27 H 0.13 5.16 6.74 -2.91 -0.02 5.14 16 28 H 0.16 5.93 8.06 -2.91 -0.02 5.90 16 29 H 0.16 6.18 8.06 -2.91 -0.02 6.16 16 30 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 31 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.41 5.69 9.06 -74.05 -0.67 5.02 16 Total: -1.00 -62.84 297.35 2.47 -60.37 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.52 Total: 25.26 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.24 Total: -21.19 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.14 Total: -86.84 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.09 Total: -12.48 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -62.84 2.47 -60.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244531986.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.808 kcal (2) G-P(sol) polarization free energy of solvation -62.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds