Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 119.99571 * 2 1 4 4 H 1.48499 * 109.46909 * 274.99011 * 3 2 1 5 5 H 1.48494 * 109.47086 * 34.99084 * 3 2 1 6 6 H 1.48497 * 109.46936 * 154.99168 * 3 2 1 7 7 C 1.40046 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00547 * 146.20447 * 7 2 1 9 9 C 1.41335 * 119.99831 * 326.20327 * 7 2 1 10 10 C 1.40867 * 120.14458 * 337.46151 * 9 7 2 11 11 N 1.31862 * 119.95702 * 179.97438 * 10 9 7 12 12 C 1.32206 * 120.28434 * 359.71260 * 11 10 9 13 13 C 1.39987 * 120.29728 * 0.56492 * 12 11 10 14 14 C 1.48298 * 119.98395 * 179.70929 * 13 12 11 15 15 C 1.39420 * 120.11750 * 45.61932 * 14 13 12 16 16 C 1.37995 * 119.89776 * 180.27414 * 15 14 13 17 17 C 1.38334 * 120.13746 * 359.77048 * 16 15 14 18 18 C 1.38426 * 120.24615 * 359.97362 * 17 16 15 19 19 Cl 1.73599 * 119.95399 * 179.97438 * 18 17 16 20 20 C 1.38151 * 120.09766 * 0.02646 * 18 17 16 21 21 C 1.50697 * 120.07298 * 179.97438 * 20 18 17 22 22 O 1.42903 * 109.47146 * 86.87221 * 21 20 18 23 23 N 1.32547 * 120.03252 * 359.43053 * 13 12 11 24 24 H 0.96989 * 120.00174 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.02085 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.84931 * 180.29680 * 12 11 10 27 27 H 1.07995 * 120.05414 * 0.02562 * 15 14 13 28 28 H 1.07998 * 119.92768 * 179.74609 * 16 15 14 29 29 H 1.07997 * 119.87857 * 179.97438 * 17 16 15 30 30 H 1.09000 * 109.46724 * 326.87757 * 21 20 18 31 31 H 1.08994 * 109.47353 * 206.87911 * 21 20 18 32 32 H 0.96694 * 113.99867 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.3832 2.1074 -1.3948 5 1 1.4954 2.6199 0.8028 6 1 3.5876 1.4122 0.5919 7 6 2.0077 -1.2128 -0.0005 8 1 2.9508 -1.2916 -0.5208 9 6 1.4802 -2.3337 0.6798 10 6 0.5490 -2.1551 1.7216 11 7 0.0588 -3.2035 2.3535 12 6 0.4331 -4.4241 2.0101 13 6 1.3622 -4.6143 0.9804 14 6 1.7820 -5.9863 0.6051 15 6 0.8287 -6.9914 0.4487 16 6 1.2249 -8.2678 0.1050 17 6 2.5651 -8.5504 -0.0891 18 6 3.5161 -7.5556 0.0595 19 17 5.1960 -7.9188 -0.1852 20 6 3.1305 -6.2743 0.4034 21 6 4.1663 -5.1919 0.5657 22 8 4.4240 -4.5852 -0.7023 23 7 1.8626 -3.5692 0.3369 24 1 -0.4850 0.8399 0.0004 25 1 0.2361 -1.1602 2.0020 26 1 0.0236 -5.2780 2.5292 27 1 -0.2180 -6.7725 0.6001 28 1 0.4872 -9.0478 -0.0124 29 1 2.8706 -9.5508 -0.3576 30 1 5.0874 -5.6259 0.9546 31 1 3.7980 -4.4378 1.2611 32 1 5.0829 -3.8781 -0.6733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244574695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = 2.997225 kcal Electronic energy + Delta-G solvation = -20082.497091 eV Core-core repulsion = 16840.399642 eV Total energy + Delta-G solvation = -3242.097448 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.78146 -38.54394 -36.29027 -35.98220 -34.29846 -32.93122 -31.60534 -31.11596 -28.99035 -26.36701 -25.54913 -23.57564 -22.25328 -21.35857 -20.64634 -17.87731 -16.86601 -16.46700 -16.21972 -15.53708 -15.32256 -15.25074 -14.96390 -13.97746 -13.67720 -13.32271 -13.25565 -13.03040 -12.90297 -12.05717 -12.00377 -11.56849 -11.47034 -11.32552 -11.23747 -11.16367 -10.92743 -10.62615 -10.42834 -9.89283 -9.82882 -9.39657 -9.21109 -8.71953 -8.52570 -7.82261 -7.37403 -7.25400 -4.74096 1.22538 1.34896 2.25471 2.42072 2.75300 2.92681 2.96433 3.07505 3.70177 3.79251 4.26754 4.79673 4.83785 5.05293 5.21752 5.38491 5.45842 5.63219 5.77336 5.79804 5.84538 5.97501 6.05405 6.24319 6.31107 6.41357 6.54080 6.73982 6.81077 6.85219 6.99581 7.09108 7.51957 8.06610 8.20568 8.28322 8.41688 9.07155 9.55333 9.74253 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.004996 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.907114 B = 5602.599598 C = 6569.652759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.423 4.423 8 H 0.096 0.904 9 C 0.223 3.777 10 C -0.002 4.002 11 N -0.437 5.437 12 C -0.096 4.096 13 C 0.128 3.872 14 C 0.018 3.982 15 C -0.104 4.104 16 C -0.106 4.106 17 C -0.123 4.123 18 C -0.019 4.019 19 Cl -0.074 7.074 20 C -0.056 4.056 21 C 0.129 3.871 22 O -0.541 6.541 23 N -0.496 5.496 24 H 0.291 0.709 25 H 0.144 0.856 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 -8.910 0.738 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.455 4.455 8 H 0.114 0.886 9 C 0.096 3.904 10 C -0.174 4.174 11 N -0.148 5.148 12 C -0.252 4.252 13 C -0.017 4.017 14 C 0.016 3.984 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.142 4.142 18 C -0.046 4.046 19 Cl -0.045 7.045 20 C -0.058 4.058 21 C 0.051 3.949 22 O -0.345 6.345 23 N -0.214 5.214 24 H 0.103 0.897 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.697 -9.268 0.524 10.404 hybrid contribution 0.630 1.079 0.102 1.254 sum 5.326 -8.189 0.626 9.789 Atomic orbital electron populations 1.69866 1.08401 1.31015 1.28516 1.26068 0.94454 1.02155 0.91270 0.86239 0.81268 0.79534 0.79570 1.19056 1.19552 1.17755 1.19300 1.06207 0.91839 1.28172 0.88576 1.19284 0.89870 0.90259 0.91014 1.23485 1.00859 0.96723 0.96354 1.67808 1.21594 0.99103 1.26332 1.22493 1.04520 0.94943 1.03274 1.20278 0.95184 0.91831 0.94365 1.18549 0.91348 0.92320 0.96138 1.21323 0.99757 0.92178 0.99086 1.20973 0.95057 0.96683 0.99732 1.20968 0.92370 0.98554 1.02315 1.20684 0.85094 0.94584 1.04206 1.98333 1.16253 1.94644 1.95296 1.19535 0.94263 0.92454 0.99499 1.20691 0.94080 0.92832 0.87270 1.86569 1.64680 1.54320 1.28959 1.69243 1.28054 0.97682 1.26421 0.89738 0.83860 0.85336 0.85017 0.85060 0.85207 0.94005 0.92238 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.05 11.92 55.55 0.66 -17.39 16 2 C 0.09 1.98 4.72 -17.34 -0.08 1.90 16 3 Si 0.91 16.87 29.67 -169.99 -5.04 11.82 16 4 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 6 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.42 -10.62 9.18 -37.73 -0.35 -10.96 16 8 H 0.10 2.36 8.03 -52.49 -0.42 1.94 16 9 C 0.22 5.83 6.40 -84.84 -0.54 5.29 16 10 C 0.00 -0.06 10.00 -16.54 -0.17 -0.23 16 11 N -0.44 -10.93 10.47 -12.05 -0.13 -11.06 16 12 C -0.10 -2.19 10.59 -16.74 -0.18 -2.37 16 13 C 0.13 2.94 5.52 -82.77 -0.46 2.48 16 14 C 0.02 0.36 5.64 -104.90 -0.59 -0.23 16 15 C -0.10 -1.68 9.40 -39.23 -0.37 -2.05 16 16 C -0.11 -1.40 10.03 -39.64 -0.40 -1.80 16 17 C -0.12 -1.67 9.82 -39.48 -0.39 -2.06 16 18 C -0.02 -0.30 6.31 -39.54 -0.25 -0.55 16 19 Cl -0.07 -1.05 27.35 -51.86 -1.42 -2.47 16 20 C -0.06 -1.03 5.54 -104.24 -0.58 -1.60 16 21 C 0.13 2.35 5.77 36.00 0.21 2.55 16 22 O -0.54 -10.15 13.32 -35.23 -0.47 -10.62 16 23 N -0.50 -12.51 8.23 -7.50 -0.06 -12.57 16 24 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 25 H 0.14 3.66 6.61 -52.49 -0.35 3.31 16 26 H 0.13 2.55 7.94 -52.48 -0.42 2.14 16 27 H 0.13 1.96 7.95 -52.49 -0.42 1.54 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.04 0.66 7.04 -51.93 -0.37 0.30 16 31 H 0.06 1.21 6.34 -51.93 -0.33 0.88 16 32 H 0.37 5.45 9.12 45.56 0.42 5.87 16 LS Contribution 298.62 15.07 4.50 4.50 Total: -1.00 -29.04 298.62 -7.95 -36.99 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -1.86 Total: 10.42 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -4.14 Total: -9.63 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.47 Total: -41.01 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.47 Total: -10.62 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.04 Total: 11.82 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.42 Total: -2.47 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.04 -7.95 -36.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244574695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.990 kcal (2) G-P(sol) polarization free energy of solvation -29.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds