Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 119.99571 * 2 1 4 4 H 1.48499 * 109.46909 * 274.99011 * 3 2 1 5 5 H 1.48494 * 109.47086 * 34.99084 * 3 2 1 6 6 H 1.48497 * 109.46936 * 154.99168 * 3 2 1 7 7 C 1.40046 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00547 * 146.20447 * 7 2 1 9 9 C 1.41335 * 119.99831 * 326.20327 * 7 2 1 10 10 C 1.40867 * 120.14458 * 337.46151 * 9 7 2 11 11 N 1.31862 * 119.95702 * 179.97438 * 10 9 7 12 12 C 1.32206 * 120.28434 * 359.71260 * 11 10 9 13 13 C 1.39987 * 120.29728 * 0.56492 * 12 11 10 14 14 C 1.48298 * 119.98395 * 179.70929 * 13 12 11 15 15 C 1.39420 * 120.11750 * 45.61932 * 14 13 12 16 16 C 1.37995 * 119.89776 * 180.27414 * 15 14 13 17 17 C 1.38334 * 120.13746 * 359.77048 * 16 15 14 18 18 C 1.38426 * 120.24615 * 359.97362 * 17 16 15 19 19 Cl 1.73599 * 119.95399 * 179.97438 * 18 17 16 20 20 C 1.38151 * 120.09766 * 0.02646 * 18 17 16 21 21 C 1.50697 * 120.07298 * 179.97438 * 20 18 17 22 22 O 1.42903 * 109.47146 * 86.87221 * 21 20 18 23 23 N 1.32547 * 120.03252 * 359.43053 * 13 12 11 24 24 H 0.96989 * 120.00174 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.02085 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.84931 * 180.29680 * 12 11 10 27 27 H 1.07995 * 120.05414 * 0.02562 * 15 14 13 28 28 H 1.07998 * 119.92768 * 179.74609 * 16 15 14 29 29 H 1.07997 * 119.87857 * 179.97438 * 17 16 15 30 30 H 1.09000 * 109.46724 * 326.87757 * 21 20 18 31 31 H 1.08994 * 109.47353 * 206.87911 * 21 20 18 32 32 H 0.96694 * 113.99867 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.3832 2.1074 -1.3948 5 1 1.4954 2.6199 0.8028 6 1 3.5876 1.4122 0.5919 7 6 2.0077 -1.2128 -0.0005 8 1 2.9508 -1.2916 -0.5208 9 6 1.4802 -2.3337 0.6798 10 6 0.5490 -2.1551 1.7216 11 7 0.0588 -3.2035 2.3535 12 6 0.4331 -4.4241 2.0101 13 6 1.3622 -4.6143 0.9804 14 6 1.7820 -5.9863 0.6051 15 6 0.8287 -6.9914 0.4487 16 6 1.2249 -8.2678 0.1050 17 6 2.5651 -8.5504 -0.0891 18 6 3.5161 -7.5556 0.0595 19 17 5.1960 -7.9188 -0.1852 20 6 3.1305 -6.2743 0.4034 21 6 4.1663 -5.1919 0.5657 22 8 4.4240 -4.5852 -0.7023 23 7 1.8626 -3.5692 0.3369 24 1 -0.4850 0.8399 0.0004 25 1 0.2361 -1.1602 2.0020 26 1 0.0236 -5.2780 2.5292 27 1 -0.2180 -6.7725 0.6001 28 1 0.4872 -9.0478 -0.0124 29 1 2.8706 -9.5508 -0.3576 30 1 5.0874 -5.6259 0.9546 31 1 3.7980 -4.4378 1.2611 32 1 5.0829 -3.8781 -0.6733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244574695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -16.700014 kcal Electronic energy + Delta-G solvation = -20083.351227 eV Core-core repulsion = 16840.399642 eV Total energy + Delta-G solvation = -3242.951584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34692 -40.06285 -37.45895 -37.39019 -36.09518 -34.66117 -33.21897 -32.41668 -30.57469 -28.11548 -26.99337 -25.12085 -24.02473 -22.84280 -22.01995 -19.60113 -18.31479 -17.94338 -17.81229 -17.15365 -17.02912 -16.65285 -16.48165 -15.43257 -14.97462 -14.82172 -14.66892 -14.57004 -14.32596 -13.72719 -13.39126 -13.30455 -13.02748 -12.68692 -12.53261 -12.50068 -12.38556 -12.08515 -11.80292 -11.71547 -11.60285 -11.03244 -10.74364 -10.21753 -9.75445 -9.55182 -9.17276 -9.02319 -6.64359 -0.14325 0.13716 0.69100 0.95675 1.12882 1.37645 1.47464 1.58800 2.14207 2.44743 2.59877 3.35490 3.51842 3.63451 3.91364 3.98462 4.03303 4.17722 4.31423 4.37689 4.46789 4.55986 4.61524 4.67979 4.83519 4.98181 5.03027 5.15420 5.22446 5.35817 5.51892 5.68346 5.78686 6.14282 6.44081 6.53768 6.92154 7.18717 7.68304 8.01650 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.004996 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.907114 B = 5602.599598 C = 6569.652759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.052 3.948 3 Si 0.990 3.010 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.255 1.255 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.198 3.802 10 C -0.034 4.034 11 N -0.447 5.447 12 C -0.106 4.106 13 C 0.133 3.867 14 C -0.020 4.020 15 C -0.107 4.107 16 C -0.089 4.089 17 C -0.108 4.108 18 C -0.029 4.029 19 Cl -0.062 7.062 20 C -0.078 4.078 21 C 0.135 3.865 22 O -0.559 6.559 23 N -0.515 5.515 24 H 0.304 0.696 25 H 0.136 0.864 26 H 0.159 0.841 27 H 0.140 0.860 28 H 0.178 0.822 29 H 0.167 0.833 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 -10.717 0.166 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.171 4.171 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.182 1.182 6 H -0.178 1.178 7 C -0.481 4.481 8 H 0.109 0.891 9 C 0.072 3.928 10 C -0.204 4.204 11 N -0.159 5.159 12 C -0.264 4.264 13 C -0.012 4.012 14 C -0.022 4.022 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.056 4.056 19 Cl -0.033 7.033 20 C -0.079 4.079 21 C 0.057 3.943 22 O -0.366 6.366 23 N -0.234 5.234 24 H 0.115 0.885 25 H 0.153 0.847 26 H 0.176 0.824 27 H 0.158 0.842 28 H 0.195 0.805 29 H 0.185 0.815 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.075 -11.055 -0.049 12.165 hybrid contribution 0.521 1.430 0.230 1.539 sum 5.596 -9.626 0.180 11.136 Atomic orbital electron populations 1.69856 1.09957 1.32802 1.28208 1.26977 0.95077 1.05101 0.89948 0.85084 0.79519 0.74564 0.80001 1.18063 1.18214 1.17794 1.19553 1.06378 0.93120 1.29018 0.89120 1.19594 0.90430 0.91159 0.91593 1.23302 1.02704 0.96713 0.97716 1.67750 1.21836 0.99804 1.26493 1.22981 1.04828 0.94980 1.03581 1.20850 0.93945 0.93134 0.93313 1.18566 0.92807 0.91211 0.99612 1.21534 0.99572 0.92705 0.98767 1.21445 0.95927 0.96227 0.97084 1.21475 0.91992 0.99453 0.99716 1.20838 0.86395 0.94161 1.04200 1.98336 1.15337 1.94391 1.95187 1.19611 0.93869 0.93641 1.00816 1.20618 0.95037 0.92266 0.86340 1.86519 1.65465 1.55043 1.29546 1.69295 1.28782 0.98003 1.27282 0.88454 0.84704 0.82428 0.84198 0.80512 0.81537 0.91965 0.95436 0.76641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.44 11.92 21.84 0.26 -38.18 16 2 C 0.05 2.46 4.72 85.29 0.40 2.86 16 3 Si 0.99 34.71 29.67 68.60 2.04 36.75 16 4 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.26 -8.47 7.11 99.48 0.71 -7.77 16 6 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 7 C -0.45 -23.53 9.18 23.47 0.22 -23.32 16 8 H 0.09 4.67 8.03 -2.91 -0.02 4.65 16 9 C 0.20 10.91 6.40 40.25 0.26 11.17 16 10 C -0.03 -1.87 10.00 85.33 0.85 -1.02 16 11 N -0.45 -23.18 10.47 -192.05 -2.01 -25.19 16 12 C -0.11 -4.97 10.59 85.06 0.90 -4.07 16 13 C 0.13 6.28 5.52 42.14 0.23 6.51 16 14 C -0.02 -0.77 5.64 -20.05 -0.11 -0.89 16 15 C -0.11 -3.20 9.40 22.50 0.21 -2.99 16 16 C -0.09 -1.96 10.03 22.23 0.22 -1.73 16 17 C -0.11 -2.46 9.82 22.34 0.22 -2.24 16 18 C -0.03 -0.86 6.31 22.29 0.14 -0.72 16 19 Cl -0.06 -1.60 27.35 -2.72 -0.07 -1.68 16 20 C -0.08 -2.82 5.54 -19.62 -0.11 -2.93 16 21 C 0.14 5.01 5.77 71.23 0.41 5.42 16 22 O -0.56 -21.46 13.32 -148.98 -1.98 -23.45 16 23 N -0.51 -27.14 8.23 -177.65 -1.46 -28.61 16 24 H 0.30 13.00 8.29 -92.72 -0.77 12.23 16 25 H 0.14 7.32 6.61 -2.91 -0.02 7.30 16 26 H 0.16 6.21 7.94 -2.91 -0.02 6.19 16 27 H 0.14 3.87 7.95 -2.91 -0.02 3.85 16 28 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.06 1.98 7.04 -2.39 -0.02 1.96 16 31 H 0.03 1.18 6.34 -2.39 -0.02 1.16 16 32 H 0.39 11.72 9.12 -74.06 -0.68 11.05 16 Total: -1.00 -65.93 298.62 1.12 -64.81 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.51 Total: 29.48 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 3.85 Total: -13.94 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -3.21 Total: -91.98 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.98 Total: -23.45 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.04 Total: 36.75 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.07 Total: -1.68 kcal Total: -65.93 1.12 -64.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244574695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.115 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds