Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21439 * 119.99889 * 2 1 4 4 C 1.41372 * 119.99862 * 179.97438 * 2 1 3 5 5 C 1.36622 * 125.16294 * 180.02562 * 4 2 1 6 6 C 1.38492 * 113.36030 * 180.02562 * 5 4 2 7 7 C 1.47902 * 122.85450 * 179.97438 * 6 5 4 8 8 C 1.39981 * 119.89781 * 309.99640 * 7 6 5 9 9 C 1.36202 * 120.13735 * 180.02562 * 8 7 6 10 10 C 1.40982 * 119.92620 * 359.97438 * 9 8 7 11 11 C 1.40999 * 120.10056 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00157 * 150.06381 * 11 10 9 13 13 C 1.39915 * 119.99782 * 330.06695 * 11 10 9 14 14 N 1.30864 * 119.99810 * 161.73574 * 13 11 10 15 15 Si 1.86797 * 120.00152 * 341.73008 * 13 11 10 16 16 H 1.48503 * 109.46620 * 95.42006 * 15 13 11 17 17 H 1.48493 * 109.47627 * 215.41753 * 15 13 11 18 18 H 1.48498 * 109.47085 * 335.42138 * 15 13 11 19 19 C 1.40891 * 119.80247 * 0.02562 * 10 9 8 20 20 C 1.36421 * 119.86104 * 0.02562 * 19 10 9 21 21 F 1.35106 * 119.96507 * 179.72135 * 20 19 10 22 22 C 1.36658 * 114.29119 * 0.23241 * 6 5 4 23 23 S 1.70560 * 110.78279 * 359.64435 * 22 6 5 24 24 H 1.08999 * 109.47667 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47532 * 300.00645 * 1 2 3 26 26 H 1.09007 * 109.46827 * 60.00065 * 1 2 3 27 27 H 1.07995 * 123.32014 * 0.04198 * 5 4 2 28 28 H 1.07994 * 119.92885 * 0.02562 * 8 7 6 29 29 H 1.07998 * 120.03241 * 179.97438 * 9 8 7 30 30 H 0.96998 * 119.99452 * 179.97438 * 14 13 11 31 31 H 1.08008 * 120.07243 * 180.02562 * 19 10 9 32 32 H 1.07999 * 124.60520 * 179.73803 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1141 1.0517 0.0000 4 6 2.2138 -1.2243 0.0005 5 6 3.5744 -1.3473 0.0011 6 6 4.0069 -2.6630 0.0010 7 6 5.4378 -3.0373 0.0010 8 6 6.3102 -2.4592 -0.9286 9 6 7.6287 -2.8007 -0.9334 10 6 8.1158 -3.7380 0.0003 11 6 9.4802 -4.0938 -0.0009 12 1 9.9623 -4.3884 0.9195 13 6 10.2095 -4.0651 -1.1946 14 7 11.5175 -4.0396 -1.1618 15 14 9.3162 -4.0632 -2.8351 16 1 9.1680 -2.6662 -3.3164 17 1 10.0973 -4.8474 -3.8251 18 1 7.9732 -4.6744 -2.6681 19 6 7.2353 -4.3181 0.9347 20 6 5.9160 -3.9707 0.9313 21 9 5.0686 -4.5299 1.8227 22 6 2.9992 -3.5860 -0.0047 23 16 1.4758 -2.8189 -0.0002 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 4.2465 -0.5020 0.0018 28 1 5.9370 -1.7409 -1.6435 29 1 8.3002 -2.3539 -1.6516 30 1 12.0231 -4.0201 -1.9893 31 1 7.6039 -5.0363 1.6523 32 1 3.1473 -4.6558 -0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244625738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -43.250992 kcal Electronic energy + Delta-G solvation = -19422.938931 eV Core-core repulsion = 16160.959754 eV Total energy + Delta-G solvation = -3261.979177 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.04137 -39.58741 -38.25963 -36.71826 -33.79061 -31.65884 -30.51009 -29.69014 -28.67094 -25.93029 -24.27204 -21.78432 -21.48171 -19.98977 -18.99538 -17.95496 -17.33590 -16.25031 -15.55455 -15.27899 -15.22558 -15.09463 -14.89763 -14.65877 -14.39035 -13.25782 -13.09501 -12.99619 -12.84164 -12.74246 -12.55493 -12.29339 -12.08556 -11.98624 -11.51569 -11.23433 -11.01291 -10.84908 -10.45032 -10.11068 -9.92276 -9.80975 -9.45133 -8.72318 -8.52078 -7.91699 -7.47748 -7.24367 -4.76773 0.40139 1.63840 1.88880 2.05515 2.42217 2.48451 2.94645 3.05124 3.12957 3.20303 3.78044 4.14242 4.22905 4.91281 5.09599 5.20509 5.22015 5.30123 5.36827 5.49232 5.62338 5.72321 5.82742 6.07805 6.23996 6.38075 6.39746 6.54198 6.65148 6.87531 7.17031 7.22010 7.38891 7.49473 7.59208 7.83920 8.05878 8.33884 8.48551 9.75695 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.004223 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.091738 B = 6628.107351 C = 7098.583089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.424 3.576 3 O -0.466 6.466 4 C -0.323 4.323 5 C -0.021 4.021 6 C -0.035 4.035 7 C -0.223 4.223 8 C -0.027 4.027 9 C -0.247 4.247 10 C 0.115 3.885 11 C -0.425 4.425 12 H 0.097 0.903 13 C 0.082 3.918 14 N -0.788 5.788 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.241 1.241 19 C -0.250 4.250 20 C 0.153 3.847 21 F -0.159 7.159 22 C -0.224 4.224 23 S 0.193 5.807 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.151 0.849 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.291 0.709 31 H 0.114 0.886 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.093 1.626 -1.133 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.304 3.696 3 O -0.345 6.345 4 C -0.440 4.440 5 C -0.056 4.056 6 C -0.047 4.047 7 C -0.227 4.227 8 C -0.046 4.046 9 C -0.266 4.266 10 C 0.111 3.889 11 C -0.451 4.451 12 H 0.115 0.885 13 C -0.140 4.140 14 N -0.409 5.409 15 Si 0.740 3.260 16 H -0.191 1.191 17 H -0.214 1.214 18 H -0.164 1.164 19 C -0.270 4.270 20 C 0.133 3.867 21 F -0.137 7.137 22 C -0.361 4.361 23 S 0.462 5.538 24 H 0.093 0.907 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.169 0.831 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.053 1.570 -1.171 17.165 hybrid contribution 1.332 0.133 -0.517 1.435 sum -15.721 1.703 -1.688 15.903 Atomic orbital electron populations 1.22211 0.94176 1.04019 1.05027 1.20106 0.91237 0.86657 0.71603 1.90601 1.71982 1.33729 1.38228 1.23851 0.98388 0.99028 1.22713 1.21136 0.93481 0.97761 0.93191 1.17896 0.93896 0.91008 1.01901 1.17531 0.90642 1.09134 1.05431 1.20228 0.92667 0.96398 0.95326 1.20762 0.95422 1.04662 1.05726 1.17516 0.92767 0.88788 0.89836 1.19584 0.92275 1.36430 0.96840 0.88507 1.26309 0.94751 0.90551 1.02366 1.69696 1.07534 1.31835 1.31867 0.86236 0.81229 0.79385 0.79111 1.19143 1.21402 1.16406 1.20631 0.91125 1.07658 1.07623 1.17238 0.87493 0.93776 0.88148 1.91364 1.71424 1.84055 1.66897 1.25980 0.96701 1.04668 1.08750 1.82455 1.07120 0.95279 1.68942 0.90650 0.88693 0.88700 0.83111 0.87740 0.87443 0.89811 0.86779 0.81629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 10.26 36.00 0.37 -1.37 16 2 C 0.42 5.71 7.05 -33.12 -0.23 5.47 16 3 O -0.47 -7.84 17.45 5.42 0.09 -7.75 16 4 C -0.32 -4.61 6.20 -38.97 -0.24 -4.85 16 5 C -0.02 -0.35 9.57 -40.07 -0.38 -0.74 16 6 C -0.04 -0.63 5.19 -106.42 -0.55 -1.18 16 7 C -0.22 -4.57 5.62 -104.55 -0.59 -5.16 16 8 C -0.03 -0.56 9.53 -39.66 -0.38 -0.94 16 9 C -0.25 -5.56 7.10 -39.28 -0.28 -5.83 16 10 C 0.11 2.74 5.10 -106.81 -0.54 2.19 16 11 C -0.42 -10.69 9.54 -37.91 -0.36 -11.05 16 12 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 13 C 0.08 2.00 5.40 -17.34 -0.09 1.91 16 14 N -0.79 -19.47 13.93 55.55 0.77 -18.70 16 15 Si 0.91 19.30 24.51 -169.99 -4.17 15.13 16 16 H -0.27 -5.42 6.70 56.52 0.38 -5.04 16 17 H -0.29 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.24 -5.23 6.87 56.52 0.39 -4.84 16 19 C -0.25 -5.67 9.70 -39.23 -0.38 -6.05 16 20 C 0.15 3.29 7.15 -39.50 -0.28 3.01 16 21 F -0.16 -3.23 16.16 2.25 0.04 -3.19 16 22 C -0.22 -3.42 9.96 30.16 0.30 -3.12 16 23 S 0.19 2.30 21.47 -107.50 -2.31 -0.01 16 24 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.15 2.52 8.00 -52.49 -0.42 2.11 16 28 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.11 2.38 4.73 -52.49 -0.25 2.13 16 30 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.11 2.47 8.06 -52.48 -0.42 2.04 16 32 H 0.17 2.43 8.05 -52.49 -0.42 2.00 16 LS Contribution 297.67 15.07 4.49 4.49 Total: -1.00 -26.79 297.67 -7.45 -34.24 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.72 Total: 3.50 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -3.65 Total: -27.71 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.77 Total: -18.70 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.17 Total: 15.13 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -2.31 Total: -0.01 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -26.79 -7.45 -34.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244625738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.014 kcal (2) G-P(sol) polarization free energy of solvation -26.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds