Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21439 * 119.99889 * 2 1 4 4 C 1.41372 * 119.99862 * 179.97438 * 2 1 3 5 5 C 1.36622 * 125.16294 * 180.02562 * 4 2 1 6 6 C 1.38492 * 113.36030 * 180.02562 * 5 4 2 7 7 C 1.47902 * 122.85450 * 179.97438 * 6 5 4 8 8 C 1.39981 * 119.89781 * 309.99640 * 7 6 5 9 9 C 1.36202 * 120.13735 * 180.02562 * 8 7 6 10 10 C 1.40982 * 119.92620 * 359.97438 * 9 8 7 11 11 C 1.40999 * 120.10056 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00157 * 150.06381 * 11 10 9 13 13 C 1.39915 * 119.99782 * 330.06695 * 11 10 9 14 14 N 1.30864 * 119.99810 * 161.73574 * 13 11 10 15 15 Si 1.86797 * 120.00152 * 341.73008 * 13 11 10 16 16 H 1.48503 * 109.46620 * 95.42006 * 15 13 11 17 17 H 1.48493 * 109.47627 * 215.41753 * 15 13 11 18 18 H 1.48498 * 109.47085 * 335.42138 * 15 13 11 19 19 C 1.40891 * 119.80247 * 0.02562 * 10 9 8 20 20 C 1.36421 * 119.86104 * 0.02562 * 19 10 9 21 21 F 1.35106 * 119.96507 * 179.72135 * 20 19 10 22 22 C 1.36658 * 114.29119 * 0.23241 * 6 5 4 23 23 S 1.70560 * 110.78279 * 359.64435 * 22 6 5 24 24 H 1.08999 * 109.47667 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47532 * 300.00645 * 1 2 3 26 26 H 1.09007 * 109.46827 * 60.00065 * 1 2 3 27 27 H 1.07995 * 123.32014 * 0.04198 * 5 4 2 28 28 H 1.07994 * 119.92885 * 0.02562 * 8 7 6 29 29 H 1.07998 * 120.03241 * 179.97438 * 9 8 7 30 30 H 0.96998 * 119.99452 * 179.97438 * 14 13 11 31 31 H 1.08008 * 120.07243 * 180.02562 * 19 10 9 32 32 H 1.07999 * 124.60520 * 179.73803 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1141 1.0517 0.0000 4 6 2.2138 -1.2243 0.0005 5 6 3.5744 -1.3473 0.0011 6 6 4.0069 -2.6630 0.0010 7 6 5.4378 -3.0373 0.0010 8 6 6.3102 -2.4592 -0.9286 9 6 7.6287 -2.8007 -0.9334 10 6 8.1158 -3.7380 0.0003 11 6 9.4802 -4.0938 -0.0009 12 1 9.9623 -4.3884 0.9195 13 6 10.2095 -4.0651 -1.1946 14 7 11.5175 -4.0396 -1.1618 15 14 9.3162 -4.0632 -2.8351 16 1 9.1680 -2.6662 -3.3164 17 1 10.0973 -4.8474 -3.8251 18 1 7.9732 -4.6744 -2.6681 19 6 7.2353 -4.3181 0.9347 20 6 5.9160 -3.9707 0.9313 21 9 5.0686 -4.5299 1.8227 22 6 2.9992 -3.5860 -0.0047 23 16 1.4758 -2.8189 -0.0002 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 4.2465 -0.5020 0.0018 28 1 5.9370 -1.7409 -1.6435 29 1 8.3002 -2.3539 -1.6516 30 1 12.0231 -4.0201 -1.9893 31 1 7.6039 -5.0363 1.6523 32 1 3.1473 -4.6558 -0.0097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244625738.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -56.796768 kcal Electronic energy + Delta-G solvation = -19423.526319 eV Core-core repulsion = 16160.959754 eV Total energy + Delta-G solvation = -3262.566565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.72948 -40.72613 -39.83094 -38.12860 -35.55082 -32.97622 -31.88011 -31.39841 -29.82344 -27.54046 -25.53524 -23.39352 -23.19001 -21.26145 -20.26261 -19.75220 -18.45320 -17.78691 -17.02442 -16.95125 -16.88735 -16.36609 -16.14698 -16.01611 -15.71827 -14.98098 -14.70973 -14.44119 -14.14198 -13.99395 -13.77145 -13.59560 -13.39923 -13.03721 -12.97180 -12.92971 -12.62785 -12.37716 -11.95845 -11.73051 -11.58855 -11.18216 -10.96631 -10.04940 -9.78962 -9.59527 -9.04035 -9.00678 -6.63626 -0.75195 0.32810 0.55488 0.64469 0.87382 1.15618 1.26893 1.40714 1.47756 1.91306 2.07164 2.44584 3.20881 3.30149 3.55145 4.00583 4.09876 4.13771 4.20791 4.35490 4.45738 4.50366 4.61734 4.72970 4.75898 4.83368 5.05160 5.12290 5.17537 5.32013 5.42461 5.51074 5.68973 5.77354 6.04873 6.21560 6.49042 6.53157 6.64119 8.02590 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.025751 B = 0.004223 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.091738 B = 6628.107351 C = 7098.583089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.421 3.579 3 O -0.508 6.508 4 C -0.336 4.336 5 C -0.046 4.046 6 C -0.071 4.071 7 C -0.201 4.201 8 C -0.032 4.032 9 C -0.253 4.253 10 C 0.103 3.897 11 C -0.466 4.466 12 H 0.065 0.935 13 C 0.052 3.948 14 N -0.828 5.828 15 Si 0.964 3.036 16 H -0.252 1.252 17 H -0.273 1.273 18 H -0.251 1.251 19 C -0.263 4.263 20 C 0.145 3.855 21 F -0.151 7.151 22 C -0.235 4.235 23 S 0.322 5.678 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.300 0.700 31 H 0.113 0.887 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.691 1.921 -2.210 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.303 3.697 3 O -0.390 6.390 4 C -0.454 4.454 5 C -0.081 4.081 6 C -0.083 4.083 7 C -0.204 4.204 8 C -0.050 4.050 9 C -0.272 4.272 10 C 0.100 3.900 11 C -0.494 4.494 12 H 0.083 0.917 13 C -0.166 4.166 14 N -0.452 5.452 15 Si 0.786 3.214 16 H -0.177 1.177 17 H -0.199 1.199 18 H -0.175 1.175 19 C -0.283 4.283 20 C 0.125 3.875 21 F -0.130 7.130 22 C -0.373 4.373 23 S 0.592 5.408 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.664 1.855 -2.238 21.858 hybrid contribution 2.343 0.053 -0.060 2.344 sum -19.321 1.908 -2.297 19.550 Atomic orbital electron populations 1.22248 0.89995 1.05737 1.06705 1.20827 0.93365 0.85542 0.69919 1.90595 1.73259 1.35011 1.40088 1.24264 0.98117 1.01500 1.21542 1.20959 0.94632 0.96843 0.95639 1.17750 0.92676 0.92157 1.05670 1.17919 0.92615 1.06623 1.03278 1.20545 0.92002 0.96640 0.95823 1.20886 0.96425 1.04342 1.05539 1.17608 0.92412 0.89272 0.90720 1.19506 0.93397 1.39937 0.96538 0.91672 1.26906 0.95196 0.89890 1.04580 1.69709 1.08500 1.33908 1.33079 0.85506 0.79714 0.80109 0.76088 1.17675 1.19878 1.17469 1.20747 0.91870 1.07991 1.07710 1.17294 0.87143 0.94403 0.88651 1.91370 1.70969 1.83960 1.66652 1.26295 0.98843 1.05164 1.06992 1.82012 1.02813 0.91357 1.64594 0.88811 0.87016 0.86883 0.84567 0.85067 0.87144 0.88880 0.86871 0.80984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 10.26 71.23 0.73 -1.70 16 2 C 0.42 10.06 7.05 26.46 0.19 10.25 16 3 O -0.51 -16.38 17.45 -3.52 -0.06 -16.44 16 4 C -0.34 -8.54 6.20 22.66 0.14 -8.39 16 5 C -0.05 -1.47 9.57 21.95 0.21 -1.26 16 6 C -0.07 -2.36 5.19 -21.03 -0.11 -2.46 16 7 C -0.20 -8.02 5.62 -19.82 -0.11 -8.13 16 8 C -0.03 -1.28 9.53 22.22 0.21 -1.07 16 9 C -0.25 -11.46 7.10 22.47 0.16 -11.30 16 10 C 0.10 5.11 5.10 -21.28 -0.11 5.00 16 11 C -0.47 -24.97 9.54 23.35 0.22 -24.74 16 12 H 0.07 3.75 8.06 -2.91 -0.02 3.72 16 13 C 0.05 2.64 5.40 85.24 0.46 3.10 16 14 N -0.83 -42.80 13.93 21.82 0.30 -42.49 16 15 Si 0.96 40.02 24.51 68.60 1.68 41.70 16 16 H -0.25 -9.80 6.70 99.48 0.67 -9.13 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.25 -10.72 6.87 99.48 0.68 -10.03 16 19 C -0.26 -12.29 9.70 22.50 0.22 -12.08 16 20 C 0.14 6.19 7.15 22.32 0.16 6.35 16 21 F -0.15 -5.98 16.16 44.97 0.73 -5.26 16 22 C -0.23 -6.35 9.96 67.45 0.67 -5.68 16 23 S 0.32 6.00 21.47 -56.49 -1.21 4.79 16 24 H 0.09 0.82 6.56 -2.39 -0.02 0.80 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.14 4.56 8.00 -2.91 -0.02 4.54 16 28 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.11 4.89 4.73 -2.91 -0.01 4.87 16 30 H 0.30 13.79 8.30 -92.71 -0.77 13.02 16 31 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 32 H 0.17 4.42 8.05 -2.91 -0.02 4.40 16 Total: -1.00 -61.13 297.67 5.58 -55.55 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.10 Total: 14.27 kcal Atomic # 6 Polarization: -55.16 SS G_CDS: 3.04 Total: -52.12 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.30 Total: -42.49 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.06 Total: -16.44 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.73 Total: -5.26 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.68 Total: 41.70 kcal Atomic # 16 Polarization: 6.00 SS G_CDS: -1.21 Total: 4.79 kcal Total: -61.13 5.58 -55.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244625738.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.250 kcal (2) G-P(sol) polarization free energy of solvation -61.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds