Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21436 * 119.99585 * 2 1 4 4 C 1.41369 * 119.99657 * 180.02562 * 2 1 3 5 5 C 1.36614 * 125.15860 * 179.97438 * 4 2 1 6 6 C 1.38510 * 113.35904 * 180.02562 * 5 4 2 7 7 C 1.47834 * 122.85647 * 179.97438 * 6 5 4 8 8 C 1.39115 * 120.32800 * 310.02581 * 7 6 5 9 9 C 1.38307 * 119.95572 * 179.97438 * 8 7 6 10 10 F 1.35103 * 119.68809 * 179.97438 * 9 8 7 11 11 C 1.39257 * 120.62110 * 359.75092 * 9 8 7 12 12 C 1.36317 * 120.66244 * 0.50990 * 11 9 8 13 13 C 1.40791 * 120.01717 * 359.49425 * 12 11 9 14 14 C 1.40815 * 120.30563 * 180.23279 * 13 12 11 15 15 H 1.08002 * 119.99571 * 153.11122 * 14 13 12 16 16 C 1.39964 * 119.99936 * 333.11154 * 14 13 12 17 17 N 1.30852 * 119.99731 * 344.24473 * 16 14 13 18 18 Si 1.86804 * 120.00134 * 164.24664 * 16 14 13 19 19 H 1.48496 * 109.47133 * 59.99846 * 18 16 14 20 20 H 1.48498 * 109.47186 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46906 * 299.99895 * 18 16 14 22 22 C 1.36664 * 114.28538 * 0.23583 * 6 5 4 23 23 S 1.70563 * 110.78365 * 359.64035 * 22 6 5 24 24 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47343 * 300.00345 * 1 2 3 26 26 H 1.09001 * 109.47196 * 60.00138 * 1 2 3 27 27 H 1.08000 * 123.31683 * 359.97438 * 5 4 2 28 28 H 1.08001 * 120.01860 * 0.02562 * 8 7 6 29 29 H 1.08000 * 119.66615 * 180.25695 * 11 9 8 30 30 H 1.07995 * 119.99650 * 179.76982 * 12 11 9 31 31 H 0.97006 * 119.99442 * 179.97438 * 17 16 14 32 32 H 1.07997 * 124.60872 * 179.74623 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1141 1.0517 0.0000 4 6 2.2138 -1.2243 -0.0005 5 6 3.5744 -1.3472 -0.0011 6 6 4.0069 -2.6631 -0.0021 7 6 5.4371 -3.0372 -0.0034 8 6 6.3115 -2.4674 -0.9233 9 6 7.6481 -2.8226 -0.9173 10 9 8.4924 -2.2662 -1.8134 11 6 8.1328 -3.7448 0.0067 12 6 7.2975 -4.3227 0.9159 13 6 5.9318 -3.9810 0.9343 14 6 5.0645 -4.5706 1.8740 15 1 4.1769 -4.0448 2.1938 16 6 5.3526 -5.8378 2.3936 17 7 6.2332 -6.6031 1.8010 18 14 4.4801 -6.4367 3.9330 19 1 3.0157 -6.4733 3.6894 20 1 4.9589 -7.8002 4.2746 21 1 4.7718 -5.5127 5.0584 22 6 2.9991 -3.5861 -0.0075 23 16 1.4757 -2.8188 -0.0014 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 4.2464 -0.5018 -0.0016 28 1 5.9468 -1.7475 -1.6411 29 1 9.1803 -4.0079 0.0003 30 1 7.6842 -5.0393 1.6252 31 1 6.4332 -7.4813 2.1614 32 1 3.1470 -4.6558 -0.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244626541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -45.462622 kcal Electronic energy + Delta-G solvation = -19657.169434 eV Core-core repulsion = 16395.094354 eV Total energy + Delta-G solvation = -3262.075080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.55456 -39.40286 -38.19634 -36.16162 -33.79973 -31.44741 -30.01375 -29.60767 -28.07885 -25.52713 -24.18699 -22.15712 -21.08169 -19.60539 -18.63860 -17.57844 -17.04870 -16.15759 -15.50138 -15.26199 -14.96334 -14.68513 -14.53937 -14.29848 -14.19224 -13.34364 -12.83272 -12.74071 -12.57404 -12.33314 -12.19343 -12.08951 -11.80968 -11.69670 -11.39142 -11.21625 -10.98179 -10.68583 -10.51152 -10.11998 -9.77650 -9.60409 -9.36782 -8.42904 -8.33140 -7.56949 -7.37623 -7.00064 -4.58005 0.66725 1.90119 2.15993 2.33872 2.54192 2.80349 2.93049 2.94227 3.01711 3.44507 3.73394 4.32920 4.37631 5.07945 5.33140 5.36333 5.46825 5.61569 5.68826 5.84904 5.88581 5.96422 6.01959 6.17068 6.41465 6.71178 6.80367 6.84795 6.93744 7.01101 7.25378 7.50043 7.68040 7.68733 7.78085 7.98020 8.31220 8.58027 8.65389 9.91030 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.006748 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.159595 B = 4148.638629 C = 6058.806574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.425 3.575 3 O -0.473 6.473 4 C -0.332 4.332 5 C -0.020 4.020 6 C -0.035 4.035 7 C -0.150 4.150 8 C -0.095 4.095 9 C -0.043 4.043 10 F -0.173 7.173 11 C -0.124 4.124 12 C -0.134 4.134 13 C 0.125 3.875 14 C -0.446 4.446 15 H 0.085 0.915 16 C 0.076 3.924 17 N -0.785 5.785 18 Si 0.907 3.093 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.191 4.191 23 S 0.179 5.821 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.147 0.853 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.286 0.714 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 2.243 -0.534 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.306 3.694 3 O -0.352 6.352 4 C -0.449 4.449 5 C -0.055 4.055 6 C -0.046 4.046 7 C -0.154 4.154 8 C -0.115 4.115 9 C -0.063 4.063 10 F -0.152 7.152 11 C -0.143 4.143 12 C -0.153 4.153 13 C 0.121 3.879 14 C -0.475 4.475 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.409 5.409 18 Si 0.731 3.269 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.329 4.329 23 S 0.447 5.553 24 H 0.094 0.906 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.164 0.836 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.219 1.988 -0.549 10.425 hybrid contribution 1.412 -0.097 0.532 1.512 sum -8.807 1.891 -0.018 9.008 Atomic orbital electron populations 1.22206 0.94437 1.04001 1.04786 1.20070 0.91115 0.86732 0.71471 1.90581 1.72012 1.33817 1.38821 1.23728 0.98352 0.98834 1.23941 1.21151 0.93411 0.97829 0.93122 1.17828 0.94244 0.90463 1.02021 1.17934 0.89122 1.07474 1.00850 1.20511 0.91591 1.00123 0.99230 1.17159 0.87917 1.04709 0.96508 1.91296 1.71292 1.85193 1.67418 1.20517 0.99189 0.97768 0.96841 1.20924 0.92803 1.01633 0.99931 1.17566 0.91943 0.88788 0.89568 1.19522 1.08110 1.00333 1.19495 0.89714 1.25971 0.94523 0.96532 0.97375 1.69792 1.26749 1.08788 1.35588 0.86353 0.80481 0.78349 0.81709 1.18696 1.20103 1.18549 1.26093 0.95687 1.05300 1.05778 1.82449 1.08023 0.95504 1.69330 0.90612 0.88873 0.88897 0.83556 0.87867 0.88034 0.85440 0.90308 0.80744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 10.26 36.01 0.37 -1.66 16 2 C 0.43 6.39 7.05 -33.12 -0.23 6.15 16 3 O -0.47 -8.60 17.44 5.42 0.09 -8.51 16 4 C -0.33 -5.33 6.20 -38.98 -0.24 -5.57 16 5 C -0.02 -0.38 9.58 -40.07 -0.38 -0.76 16 6 C -0.03 -0.69 4.80 -106.44 -0.51 -1.20 16 7 C -0.15 -3.38 5.64 -104.23 -0.59 -3.97 16 8 C -0.10 -2.11 9.58 -39.23 -0.38 -2.49 16 9 C -0.04 -0.99 7.30 -39.18 -0.29 -1.28 16 10 F -0.17 -3.85 17.26 2.25 0.04 -3.81 16 11 C -0.12 -2.82 9.94 -39.89 -0.40 -3.21 16 12 C -0.13 -3.20 8.61 -39.31 -0.34 -3.54 16 13 C 0.12 3.00 5.56 -106.54 -0.59 2.40 16 14 C -0.45 -10.43 7.41 -37.96 -0.28 -10.71 16 15 H 0.08 1.94 6.67 -52.49 -0.35 1.59 16 16 C 0.08 1.69 5.16 -17.32 -0.09 1.60 16 17 N -0.78 -18.20 10.99 55.55 0.61 -17.59 16 18 Si 0.91 16.96 29.59 -169.99 -5.03 11.93 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 C -0.19 -3.40 9.05 30.16 0.27 -3.13 16 23 S 0.18 2.50 21.47 -107.50 -2.31 0.19 16 24 H 0.07 0.68 6.56 -51.93 -0.34 0.34 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.15 2.71 8.00 -52.49 -0.42 2.29 16 28 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.13 3.09 6.25 -52.49 -0.33 2.76 16 31 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 32 H 0.18 3.19 7.66 -52.49 -0.40 2.79 16 LS Contribution 300.05 15.07 4.52 4.52 Total: -1.00 -26.16 300.05 -8.41 -34.57 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -2.67 Total: 6.04 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -3.68 Total: -27.34 kcal Atomic # 7 Polarization: -18.20 SS G_CDS: 0.61 Total: -17.59 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.81 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.31 Total: 0.19 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.16 -8.41 -34.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244626541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.891 kcal (2) G-P(sol) polarization free energy of solvation -26.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds