Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21436 * 119.99585 * 2 1 4 4 C 1.41369 * 119.99657 * 180.02562 * 2 1 3 5 5 C 1.36614 * 125.15860 * 179.97438 * 4 2 1 6 6 C 1.38510 * 113.35904 * 180.02562 * 5 4 2 7 7 C 1.47834 * 122.85647 * 179.97438 * 6 5 4 8 8 C 1.39115 * 120.32800 * 310.02581 * 7 6 5 9 9 C 1.38307 * 119.95572 * 179.97438 * 8 7 6 10 10 F 1.35103 * 119.68809 * 179.97438 * 9 8 7 11 11 C 1.39257 * 120.62110 * 359.75092 * 9 8 7 12 12 C 1.36317 * 120.66244 * 0.50990 * 11 9 8 13 13 C 1.40791 * 120.01717 * 359.49425 * 12 11 9 14 14 C 1.40815 * 120.30563 * 180.23279 * 13 12 11 15 15 H 1.08002 * 119.99571 * 153.11122 * 14 13 12 16 16 C 1.39964 * 119.99936 * 333.11154 * 14 13 12 17 17 N 1.30852 * 119.99731 * 344.24473 * 16 14 13 18 18 Si 1.86804 * 120.00134 * 164.24664 * 16 14 13 19 19 H 1.48496 * 109.47133 * 59.99846 * 18 16 14 20 20 H 1.48498 * 109.47186 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46906 * 299.99895 * 18 16 14 22 22 C 1.36664 * 114.28538 * 0.23583 * 6 5 4 23 23 S 1.70563 * 110.78365 * 359.64035 * 22 6 5 24 24 H 1.08999 * 109.47450 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47343 * 300.00345 * 1 2 3 26 26 H 1.09001 * 109.47196 * 60.00138 * 1 2 3 27 27 H 1.08000 * 123.31683 * 359.97438 * 5 4 2 28 28 H 1.08001 * 120.01860 * 0.02562 * 8 7 6 29 29 H 1.08000 * 119.66615 * 180.25695 * 11 9 8 30 30 H 1.07995 * 119.99650 * 179.76982 * 12 11 9 31 31 H 0.97006 * 119.99442 * 179.97438 * 17 16 14 32 32 H 1.07997 * 124.60872 * 179.74623 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1141 1.0517 0.0000 4 6 2.2138 -1.2243 -0.0005 5 6 3.5744 -1.3472 -0.0011 6 6 4.0069 -2.6631 -0.0021 7 6 5.4371 -3.0372 -0.0034 8 6 6.3115 -2.4674 -0.9233 9 6 7.6481 -2.8226 -0.9173 10 9 8.4924 -2.2662 -1.8134 11 6 8.1328 -3.7448 0.0067 12 6 7.2975 -4.3227 0.9159 13 6 5.9318 -3.9810 0.9343 14 6 5.0645 -4.5706 1.8740 15 1 4.1769 -4.0448 2.1938 16 6 5.3526 -5.8378 2.3936 17 7 6.2332 -6.6031 1.8010 18 14 4.4801 -6.4367 3.9330 19 1 3.0157 -6.4733 3.6894 20 1 4.9589 -7.8002 4.2746 21 1 4.7718 -5.5127 5.0584 22 6 2.9991 -3.5861 -0.0075 23 16 1.4757 -2.8188 -0.0014 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 4.2464 -0.5018 -0.0016 28 1 5.9468 -1.7475 -1.6411 29 1 9.1803 -4.0079 0.0003 30 1 7.6842 -5.0393 1.6252 31 1 6.4332 -7.4813 2.1614 32 1 3.1470 -4.6558 -0.0130 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244626541.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -56.833213 kcal Electronic energy + Delta-G solvation = -19657.662499 eV Core-core repulsion = 16395.094354 eV Total energy + Delta-G solvation = -3262.568146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.35489 -40.69711 -39.78225 -37.67929 -35.53717 -32.78440 -31.44021 -31.33697 -29.40384 -27.24157 -25.59007 -23.75203 -22.80517 -20.98512 -20.09962 -19.31031 -18.36028 -17.76780 -17.16923 -16.66279 -16.38011 -16.10808 -16.08502 -15.85128 -15.75617 -14.86089 -14.44959 -14.26439 -13.81821 -13.79982 -13.57648 -13.48615 -13.06364 -13.00745 -12.96506 -12.79339 -12.54267 -12.24336 -12.00370 -11.78505 -11.36803 -11.07131 -10.91831 -9.93713 -9.68607 -9.33320 -8.97017 -8.67906 -6.36264 -0.65348 0.55396 0.64732 0.79014 0.98433 1.38557 1.40318 1.48577 1.51999 2.03357 2.17461 2.61410 3.27929 3.55937 3.88921 4.14401 4.20954 4.23264 4.31973 4.47797 4.51265 4.61856 4.63964 4.90442 4.97802 5.10542 5.20341 5.22077 5.29044 5.47232 5.49788 5.75874 5.87174 6.00362 6.20961 6.52436 6.53736 6.81511 6.87510 8.23807 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.006748 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.159595 B = 4148.638629 C = 6058.806574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.422 3.578 3 O -0.511 6.511 4 C -0.339 4.339 5 C -0.048 4.048 6 C -0.060 4.060 7 C -0.151 4.151 8 C -0.102 4.102 9 C -0.060 4.060 10 F -0.171 7.171 11 C -0.128 4.128 12 C -0.154 4.154 13 C 0.099 3.901 14 C -0.460 4.460 15 H 0.086 0.914 16 C 0.042 3.958 17 N -0.812 5.812 18 Si 0.972 3.028 19 H -0.251 1.251 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.213 4.213 23 S 0.303 5.697 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.132 0.868 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.293 0.707 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 1.952 0.007 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.305 3.695 3 O -0.393 6.393 4 C -0.457 4.457 5 C -0.082 4.082 6 C -0.072 4.072 7 C -0.155 4.155 8 C -0.122 4.122 9 C -0.080 4.080 10 F -0.150 7.150 11 C -0.147 4.147 12 C -0.173 4.173 13 C 0.095 3.905 14 C -0.488 4.488 15 H 0.104 0.896 16 C -0.175 4.175 17 N -0.437 5.437 18 Si 0.793 3.207 19 H -0.175 1.175 20 H -0.194 1.194 21 H -0.189 1.189 22 C -0.351 4.351 23 S 0.572 5.428 24 H 0.111 0.889 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.149 0.851 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.464 1.688 -0.025 13.569 hybrid contribution 2.307 0.002 0.312 2.328 sum -11.157 1.691 0.287 11.288 Atomic orbital electron populations 1.22237 0.89994 1.05688 1.06660 1.20802 0.93355 0.85473 0.69849 1.90574 1.73305 1.34949 1.40446 1.24180 0.98002 1.01263 1.22264 1.20964 0.94602 0.96795 0.95881 1.17733 0.93259 0.91569 1.04595 1.18277 0.90984 1.06350 0.99864 1.20725 0.91521 1.00344 0.99578 1.17315 0.88373 1.05306 0.96995 1.91287 1.71250 1.85185 1.67322 1.20663 0.99955 0.97549 0.96520 1.20905 0.93283 1.02481 1.00661 1.17920 0.92312 0.89772 0.90447 1.19657 1.08240 1.00979 1.19945 0.89625 1.26716 0.95003 0.96171 0.99654 1.69838 1.27678 1.09338 1.36820 0.85375 0.79856 0.77854 0.77662 1.17504 1.19352 1.18859 1.26202 0.98220 1.05079 1.05566 1.81906 1.03527 0.91766 1.65556 0.88928 0.86993 0.86849 0.85060 0.86653 0.86424 0.86351 0.89609 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 10.26 71.24 0.73 -2.33 16 2 C 0.42 11.75 7.05 26.46 0.19 11.93 16 3 O -0.51 -18.21 17.44 -3.51 -0.06 -18.27 16 4 C -0.34 -10.29 6.20 22.66 0.14 -10.15 16 5 C -0.05 -1.77 9.58 21.95 0.21 -1.56 16 6 C -0.06 -2.41 4.80 -21.04 -0.10 -2.51 16 7 C -0.15 -7.04 5.64 -19.61 -0.11 -7.15 16 8 C -0.10 -4.71 9.58 22.50 0.22 -4.49 16 9 C -0.06 -2.84 7.30 22.53 0.16 -2.67 16 10 F -0.17 -7.76 17.26 44.97 0.78 -6.99 16 11 C -0.13 -6.01 9.94 22.07 0.22 -5.79 16 12 C -0.15 -7.66 8.61 22.45 0.19 -7.47 16 13 C 0.10 4.91 5.56 -21.11 -0.12 4.79 16 14 C -0.46 -21.82 7.41 23.32 0.17 -21.65 16 15 H 0.09 3.93 6.67 -2.91 -0.02 3.91 16 16 C 0.04 1.87 5.16 85.26 0.44 2.31 16 17 N -0.81 -38.11 10.99 21.83 0.24 -37.87 16 18 Si 0.97 33.96 29.59 68.60 2.03 35.99 16 19 H -0.25 -8.28 7.11 99.48 0.71 -7.57 16 20 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 21 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 22 C -0.21 -7.35 9.05 67.45 0.61 -6.74 16 23 S 0.30 7.42 21.47 -56.49 -1.21 6.21 16 24 H 0.09 1.16 6.56 -2.39 -0.02 1.15 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.13 5.11 8.00 -2.91 -0.02 5.09 16 28 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 29 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 30 H 0.12 5.99 6.25 -2.91 -0.02 5.98 16 31 H 0.29 12.47 8.30 -92.70 -0.77 11.70 16 32 H 0.17 6.00 7.66 -2.91 -0.02 5.98 16 Total: -1.00 -58.28 300.05 5.89 -52.39 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.17 Total: 22.04 kcal Atomic # 6 Polarization: -56.45 SS G_CDS: 2.95 Total: -53.49 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.24 Total: -37.87 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.06 Total: -18.27 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.78 Total: -6.99 kcal Atomic # 14 Polarization: 33.96 SS G_CDS: 2.03 Total: 35.99 kcal Atomic # 16 Polarization: 7.42 SS G_CDS: -1.21 Total: 6.21 kcal Total: -58.28 5.89 -52.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244626541.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.448 kcal (2) G-P(sol) polarization free energy of solvation -58.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds