Wall clock time and date at job start Tue Mar 31 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21448 * 120.00110 * 2 1 4 4 C 1.41293 * 120.00249 * 179.97438 * 2 1 3 5 5 C 1.36808 * 125.23600 * 180.26406 * 4 2 1 6 6 C 1.38207 * 113.33343 * 180.22351 * 5 4 2 7 7 C 1.48442 * 122.77128 * 179.82258 * 6 5 4 8 8 C 1.39814 * 119.96280 * 359.75165 * 7 6 5 9 9 C 1.38243 * 120.42105 * 179.97438 * 8 7 6 10 10 C 1.38057 * 120.34878 * 0.02562 * 9 8 7 11 11 F 1.35101 * 120.04922 * 180.02562 * 10 9 8 12 12 C 1.41047 * 119.90845 * 359.97438 * 10 9 8 13 13 C 1.41316 * 120.20340 * 180.02562 * 12 10 9 14 14 H 1.07991 * 119.99995 * 334.62055 * 13 12 10 15 15 C 1.39907 * 119.99453 * 154.62087 * 13 12 10 16 16 N 1.30859 * 120.00687 * 342.97480 * 15 13 12 17 17 Si 1.86809 * 119.99901 * 162.97330 * 15 13 12 18 18 H 1.48503 * 109.46734 * 89.99833 * 17 15 13 19 19 H 1.48501 * 109.47269 * 209.99847 * 17 15 13 20 20 H 1.48502 * 109.46840 * 330.00255 * 17 15 13 21 21 C 1.38640 * 119.96401 * 179.72967 * 7 6 5 22 22 C 1.36167 * 114.45907 * 359.55028 * 6 5 4 23 23 S 1.70559 * 110.83744 * 0.24804 * 22 6 5 24 24 H 1.08996 * 109.47667 * 270.00823 * 1 2 3 25 25 H 1.09002 * 109.46732 * 30.00733 * 1 2 3 26 26 H 1.09001 * 109.47041 * 150.00358 * 1 2 3 27 27 H 1.08001 * 123.33170 * 0.02562 * 5 4 2 28 28 H 1.07999 * 119.78665 * 0.02562 * 8 7 6 29 29 H 1.07999 * 119.82737 * 180.27512 * 9 8 7 30 30 H 0.96994 * 120.00727 * 180.02562 * 16 15 13 31 31 H 1.07999 * 120.16697 * 0.02562 * 21 7 6 32 32 H 1.08005 * 124.57675 * 180.23154 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2135 -1.2236 0.0005 5 6 3.5759 -1.3484 0.0058 6 6 4.0053 -2.6621 0.0001 7 6 5.4413 -3.0380 0.0003 8 6 6.4236 -2.0431 0.0012 9 6 7.7637 -2.3825 0.0019 10 6 8.1474 -3.7086 0.0013 11 9 9.4588 -4.0335 0.0025 12 6 7.1684 -4.7240 0.0004 13 6 7.5542 -6.0835 0.0003 14 1 8.5147 -6.3722 -0.4001 15 6 6.6916 -7.0554 0.5188 16 7 5.6976 -6.7021 1.2931 17 14 6.9587 -8.8575 0.1057 18 1 7.8559 -9.4696 1.1185 19 1 5.6531 -9.5650 0.1089 20 1 7.5797 -8.9704 -1.2385 21 6 5.8070 -4.3753 0.0001 22 6 3.0023 -3.5830 0.0002 23 16 1.4773 -2.8193 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2491 -0.5039 0.0104 28 1 6.1335 -1.0028 0.0021 29 1 8.5145 -1.6061 0.0071 30 1 5.0998 -7.3759 1.6529 31 1 5.0495 -5.1451 -0.0007 32 1 3.1523 -4.6526 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244627225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:33 Heat of formation + Delta-G solvation = -44.961481 kcal Electronic energy + Delta-G solvation = -19405.725517 eV Core-core repulsion = 16143.672168 eV Total energy + Delta-G solvation = -3262.053349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.31730 -39.57326 -38.24450 -36.30721 -33.83993 -31.52633 -30.00341 -29.79727 -27.89714 -25.80278 -24.38308 -21.86901 -21.30364 -19.75572 -18.81564 -17.66012 -16.79144 -16.28565 -15.72846 -15.24185 -15.10963 -14.74790 -14.57854 -14.09988 -14.07865 -13.34049 -12.95074 -12.85915 -12.65428 -12.56885 -12.20341 -12.05925 -11.81364 -11.71863 -11.47822 -11.14553 -10.97668 -10.74120 -10.58362 -10.15348 -9.83558 -9.62595 -9.40737 -8.73442 -8.56174 -7.72844 -7.10326 -6.88403 -4.55344 0.44827 1.69320 1.88817 2.08355 2.60928 2.71744 2.97172 2.98996 3.05488 3.42674 3.80306 4.21612 4.45806 4.96872 5.25712 5.29670 5.35985 5.41717 5.50822 5.59621 5.76876 5.83567 6.01588 6.16991 6.27440 6.44351 6.56882 6.77457 6.98031 7.06681 7.32505 7.43909 7.53767 7.74428 7.79344 7.93388 8.35669 8.58858 8.66787 9.97748 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.004693 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.868455 B = 5964.490915 C = 7306.011740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.425 3.575 3 O -0.468 6.468 4 C -0.326 4.326 5 C -0.019 4.019 6 C -0.056 4.056 7 C -0.037 4.037 8 C -0.203 4.203 9 C -0.121 4.121 10 C -0.023 4.023 11 F -0.162 7.162 12 C 0.084 3.916 13 C -0.452 4.452 14 H 0.084 0.916 15 C 0.077 3.923 16 N -0.792 5.792 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.123 4.123 22 C -0.212 4.212 23 S 0.197 5.803 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.284 0.716 31 H 0.130 0.870 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.000 3.843 -1.672 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.305 3.695 3 O -0.347 6.347 4 C -0.443 4.443 5 C -0.054 4.054 6 C -0.068 4.068 7 C -0.039 4.039 8 C -0.223 4.223 9 C -0.140 4.140 10 C -0.044 4.044 11 F -0.141 7.141 12 C 0.081 3.919 13 C -0.481 4.481 14 H 0.102 0.898 15 C -0.141 4.141 16 N -0.417 5.417 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.143 4.143 22 C -0.349 4.349 23 S 0.466 5.534 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.170 0.830 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.148 0.852 32 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.392 3.705 -1.524 13.024 hybrid contribution 1.871 -0.614 0.018 1.969 sum -10.521 3.091 -1.506 11.069 Atomic orbital electron populations 1.22244 0.94163 1.04589 1.04733 1.20067 0.91259 0.86615 0.71569 1.90595 1.72069 1.33733 1.38270 1.23875 0.98346 0.99121 1.23003 1.21062 0.93502 0.97793 0.93011 1.18192 0.94704 0.91164 1.02711 1.18100 0.88409 0.94078 1.03336 1.20203 0.91520 0.96995 1.13536 1.20419 0.96063 0.93893 1.03596 1.17948 0.77357 0.93061 1.15990 1.91279 1.33938 1.93782 1.95100 1.17528 0.90759 0.92598 0.90985 1.19516 1.03234 0.90703 1.34629 0.89765 1.25907 0.93807 1.02074 0.92348 1.69805 1.13354 1.36827 1.21675 0.86235 0.78822 0.80911 0.80459 1.19238 1.19902 1.18243 1.21223 0.95930 0.93307 1.03830 1.25922 0.96505 1.05306 1.07184 1.82517 1.07154 0.95129 1.68556 0.88489 0.89293 0.90036 0.82990 0.88049 0.87749 0.90550 0.85232 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 9.94 36.00 0.36 -1.46 16 2 C 0.42 5.83 7.05 -33.15 -0.23 5.60 16 3 O -0.47 -7.93 17.45 5.41 0.09 -7.84 16 4 C -0.33 -4.78 6.20 -38.94 -0.24 -5.03 16 5 C -0.02 -0.33 9.25 -40.11 -0.37 -0.70 16 6 C -0.06 -1.05 5.80 -106.45 -0.62 -1.67 16 7 C -0.04 -0.80 5.87 -104.96 -0.62 -1.42 16 8 C -0.20 -4.31 9.49 -38.99 -0.37 -4.68 16 9 C -0.12 -2.69 9.99 -39.65 -0.40 -3.08 16 10 C -0.02 -0.58 7.31 -38.58 -0.28 -0.86 16 11 F -0.16 -4.03 16.71 2.25 0.04 -4.00 16 12 C 0.08 2.19 5.57 -106.80 -0.59 1.59 16 13 C -0.45 -11.69 8.77 -37.79 -0.33 -12.03 16 14 H 0.08 2.17 7.74 -52.49 -0.41 1.76 16 15 C 0.08 1.83 5.15 -17.34 -0.09 1.74 16 16 N -0.79 -19.00 10.97 55.55 0.61 -18.39 16 17 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 C -0.12 -2.96 8.11 -38.57 -0.31 -3.27 16 22 C -0.21 -3.46 10.27 29.99 0.31 -3.15 16 23 S 0.20 2.47 21.81 -107.50 -2.34 0.13 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.62 7.24 -51.93 -0.38 0.25 16 27 H 0.15 2.55 6.67 -52.49 -0.35 2.20 16 28 H 0.10 1.90 6.54 -52.49 -0.34 1.56 16 29 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 31 H 0.13 3.09 4.71 -52.49 -0.25 2.84 16 32 H 0.18 2.87 6.78 -52.48 -0.36 2.52 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -27.89 298.95 -8.40 -36.29 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.48 Total: 4.93 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -3.79 Total: -28.41 kcal Atomic # 7 Polarization: -19.00 SS G_CDS: 0.61 Total: -18.39 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.34 Total: 0.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.89 -8.40 -36.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244627225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.672 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds