Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21448 * 120.00110 * 2 1 4 4 C 1.41293 * 120.00249 * 179.97438 * 2 1 3 5 5 C 1.36808 * 125.23600 * 180.26406 * 4 2 1 6 6 C 1.38207 * 113.33343 * 180.22351 * 5 4 2 7 7 C 1.48442 * 122.77128 * 179.82258 * 6 5 4 8 8 C 1.39814 * 119.96280 * 359.75165 * 7 6 5 9 9 C 1.38243 * 120.42105 * 179.97438 * 8 7 6 10 10 C 1.38057 * 120.34878 * 0.02562 * 9 8 7 11 11 F 1.35101 * 120.04922 * 180.02562 * 10 9 8 12 12 C 1.41047 * 119.90845 * 359.97438 * 10 9 8 13 13 C 1.41316 * 120.20340 * 180.02562 * 12 10 9 14 14 H 1.07991 * 119.99995 * 334.62055 * 13 12 10 15 15 C 1.39907 * 119.99453 * 154.62087 * 13 12 10 16 16 N 1.30859 * 120.00687 * 342.97480 * 15 13 12 17 17 Si 1.86809 * 119.99901 * 162.97330 * 15 13 12 18 18 H 1.48503 * 109.46734 * 89.99833 * 17 15 13 19 19 H 1.48501 * 109.47269 * 209.99847 * 17 15 13 20 20 H 1.48502 * 109.46840 * 330.00255 * 17 15 13 21 21 C 1.38640 * 119.96401 * 179.72967 * 7 6 5 22 22 C 1.36167 * 114.45907 * 359.55028 * 6 5 4 23 23 S 1.70559 * 110.83744 * 0.24804 * 22 6 5 24 24 H 1.08996 * 109.47667 * 270.00823 * 1 2 3 25 25 H 1.09002 * 109.46732 * 30.00733 * 1 2 3 26 26 H 1.09001 * 109.47041 * 150.00358 * 1 2 3 27 27 H 1.08001 * 123.33170 * 0.02562 * 5 4 2 28 28 H 1.07999 * 119.78665 * 0.02562 * 8 7 6 29 29 H 1.07999 * 119.82737 * 180.27512 * 9 8 7 30 30 H 0.96994 * 120.00727 * 180.02562 * 16 15 13 31 31 H 1.07999 * 120.16697 * 0.02562 * 21 7 6 32 32 H 1.08005 * 124.57675 * 180.23154 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2135 -1.2236 0.0005 5 6 3.5759 -1.3484 0.0058 6 6 4.0053 -2.6621 0.0001 7 6 5.4413 -3.0380 0.0003 8 6 6.4236 -2.0431 0.0012 9 6 7.7637 -2.3825 0.0019 10 6 8.1474 -3.7086 0.0013 11 9 9.4588 -4.0335 0.0025 12 6 7.1684 -4.7240 0.0004 13 6 7.5542 -6.0835 0.0003 14 1 8.5147 -6.3722 -0.4001 15 6 6.6916 -7.0554 0.5188 16 7 5.6976 -6.7021 1.2931 17 14 6.9587 -8.8575 0.1057 18 1 7.8559 -9.4696 1.1185 19 1 5.6531 -9.5650 0.1089 20 1 7.5797 -8.9704 -1.2385 21 6 5.8070 -4.3753 0.0001 22 6 3.0023 -3.5830 0.0002 23 16 1.4773 -2.8193 0.0005 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5140 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2491 -0.5039 0.0104 28 1 6.1335 -1.0028 0.0021 29 1 8.5145 -1.6061 0.0071 30 1 5.0998 -7.3759 1.6529 31 1 5.0495 -5.1451 -0.0007 32 1 3.1523 -4.6526 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244627225.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = -58.477862 kcal Electronic energy + Delta-G solvation = -19406.311631 eV Core-core repulsion = 16143.672168 eV Total energy + Delta-G solvation = -3262.639463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.23954 -40.76145 -39.75949 -37.82276 -35.62684 -32.72440 -31.81820 -31.06676 -29.26714 -27.52646 -25.77672 -23.37436 -23.05373 -21.08291 -20.24145 -19.20837 -18.16223 -18.04583 -17.28958 -16.76081 -16.29628 -16.16201 -16.01105 -15.87578 -15.56362 -14.90242 -14.48048 -14.21802 -14.14819 -13.69135 -13.59248 -13.40092 -13.22022 -13.07505 -13.00433 -12.76215 -12.59863 -12.24034 -12.05775 -11.76959 -11.40754 -11.16150 -10.95720 -10.16331 -9.77313 -9.56707 -8.80999 -8.54049 -6.46610 -0.76561 0.32380 0.55186 0.85128 0.85846 1.33021 1.37062 1.48475 1.53683 1.99274 2.17818 2.68574 3.22924 3.51705 3.94266 4.01848 4.11416 4.18910 4.21101 4.42841 4.50026 4.62891 4.63537 4.79103 4.92264 5.02043 5.10227 5.21468 5.24116 5.38822 5.54852 5.65689 5.94832 5.99141 6.12185 6.48257 6.50214 6.72796 6.81296 8.22524 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.004693 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.868455 B = 5964.490915 C = 7306.011740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.423 3.577 3 O -0.506 6.506 4 C -0.336 4.336 5 C -0.043 4.043 6 C -0.087 4.087 7 C -0.033 4.033 8 C -0.204 4.204 9 C -0.118 4.118 10 C -0.063 4.063 11 F -0.170 7.170 12 C 0.057 3.943 13 C -0.494 4.494 14 H 0.070 0.930 15 C 0.044 3.956 16 N -0.813 5.813 17 Si 0.982 3.018 18 H -0.264 1.264 19 H -0.255 1.255 20 H -0.263 1.263 21 C -0.143 4.143 22 C -0.230 4.230 23 S 0.327 5.673 24 H 0.120 0.880 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.144 0.856 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.295 0.705 31 H 0.127 0.873 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 3.783 -1.654 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.305 3.695 3 O -0.388 6.388 4 C -0.454 4.454 5 C -0.077 4.077 6 C -0.099 4.099 7 C -0.035 4.035 8 C -0.223 4.223 9 C -0.137 4.137 10 C -0.083 4.083 11 F -0.150 7.150 12 C 0.055 3.945 13 C -0.522 4.522 14 H 0.088 0.912 15 C -0.173 4.173 16 N -0.438 5.438 17 Si 0.802 3.198 18 H -0.189 1.189 19 H -0.179 1.179 20 H -0.187 1.187 21 C -0.163 4.163 22 C -0.369 4.369 23 S 0.597 5.403 24 H 0.138 0.862 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.144 0.856 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.829 3.657 -1.502 16.315 hybrid contribution 2.729 -0.493 0.031 2.774 sum -13.099 3.164 -1.471 13.556 Atomic orbital electron populations 1.22292 0.89939 1.06235 1.06626 1.20772 0.93386 0.85405 0.69942 1.90589 1.73318 1.34891 1.39963 1.24305 0.98054 1.01485 1.21544 1.20923 0.94743 0.96760 0.95303 1.18043 0.93291 0.92502 1.06035 1.18457 0.90886 0.93318 1.00821 1.20585 0.91103 0.98347 1.12292 1.20726 0.97245 0.93429 1.02318 1.18282 0.77158 0.94252 1.18616 1.91234 1.34315 1.93977 1.95425 1.17911 0.91942 0.93161 0.91535 1.19666 1.03782 0.91832 1.36960 0.91196 1.26658 0.93174 1.05922 0.91520 1.69819 1.13767 1.38629 1.21613 0.85206 0.79427 0.75401 0.79765 1.18914 1.17866 1.18651 1.21227 0.95134 0.94375 1.05588 1.26157 0.99111 1.05325 1.06276 1.82005 1.02524 0.91385 1.64344 0.86205 0.88065 0.88034 0.83821 0.85425 0.85261 0.89429 0.85567 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 9.94 71.24 0.71 -1.94 16 2 C 0.42 10.44 7.05 26.44 0.19 10.63 16 3 O -0.51 -16.50 17.45 -3.55 -0.06 -16.56 16 4 C -0.34 -9.01 6.20 22.69 0.14 -8.87 16 5 C -0.04 -1.44 9.25 21.93 0.20 -1.24 16 6 C -0.09 -3.21 5.80 -21.05 -0.12 -3.33 16 7 C -0.03 -1.46 5.87 -20.08 -0.12 -1.57 16 8 C -0.20 -8.79 9.49 22.65 0.22 -8.57 16 9 C -0.12 -5.40 9.99 22.23 0.22 -5.17 16 10 C -0.06 -3.29 7.31 22.92 0.17 -3.13 16 11 F -0.17 -8.95 16.71 44.97 0.75 -8.20 16 12 C 0.06 3.14 5.57 -21.27 -0.12 3.02 16 13 C -0.49 -26.91 8.77 23.43 0.21 -26.70 16 14 H 0.07 3.84 7.74 -2.92 -0.02 3.82 16 15 C 0.04 2.13 5.15 85.24 0.44 2.57 16 16 N -0.81 -39.70 10.97 21.82 0.24 -39.46 16 17 Si 0.98 36.85 29.59 68.60 2.03 38.88 16 18 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 19 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 21 C -0.14 -7.18 8.11 22.93 0.19 -6.99 16 22 C -0.23 -7.22 10.27 67.34 0.69 -6.53 16 23 S 0.33 6.90 21.81 -56.49 -1.23 5.67 16 24 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 0.97 7.24 -2.39 -0.02 0.96 16 27 H 0.14 4.84 6.67 -2.91 -0.02 4.82 16 28 H 0.13 4.75 6.54 -2.91 -0.02 4.73 16 29 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 30 H 0.29 12.70 8.30 -92.71 -0.77 11.93 16 31 H 0.13 6.26 4.71 -2.91 -0.01 6.24 16 32 H 0.17 5.46 6.78 -2.91 -0.02 5.44 16 Total: -1.00 -64.25 298.95 5.91 -58.34 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.18 Total: 19.16 kcal Atomic # 6 Polarization: -60.83 SS G_CDS: 3.01 Total: -57.83 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.24 Total: -39.46 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.06 Total: -16.56 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.75 Total: -8.20 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 16 Polarization: 6.90 SS G_CDS: -1.23 Total: 5.67 kcal Total: -64.25 5.91 -58.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244627225.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.136 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds