Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21448 * 119.99576 * 2 1 4 4 C 1.41292 * 120.00057 * 179.97438 * 2 1 3 5 5 C 1.36810 * 125.22767 * 180.02562 * 4 2 1 6 6 C 1.38210 * 113.32785 * 180.02562 * 5 4 2 7 7 C 1.48437 * 122.76901 * 179.97438 * 6 5 4 8 8 C 1.38630 * 120.01205 * 130.02644 * 7 6 5 9 9 C 1.40552 * 119.65946 * 179.97438 * 8 7 6 10 10 C 1.41344 * 120.15349 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99637 * 150.17259 * 10 9 8 12 12 C 1.39892 * 119.99987 * 330.16468 * 10 9 8 13 13 N 1.30864 * 120.00010 * 161.71177 * 12 10 9 14 14 Si 1.86805 * 119.99978 * 341.71736 * 12 10 9 15 15 H 1.48500 * 109.46956 * 95.40987 * 14 12 10 16 16 H 1.48501 * 109.47013 * 215.40688 * 14 12 10 17 17 H 1.48496 * 109.46811 * 335.40867 * 14 12 10 18 18 C 1.40854 * 119.68885 * 359.72828 * 9 8 7 19 19 C 1.37571 * 120.00996 * 0.54449 * 18 9 8 20 20 C 1.38745 * 120.34429 * 359.45276 * 19 18 9 21 21 F 1.35098 * 119.83894 * 180.29607 * 20 19 18 22 22 C 1.36160 * 114.46425 * 0.25230 * 6 5 4 23 23 S 1.70570 * 110.83440 * 359.61633 * 22 6 5 24 24 H 1.08997 * 109.47376 * 270.00340 * 1 2 3 25 25 H 1.09002 * 109.47334 * 30.00495 * 1 2 3 26 26 H 1.09006 * 109.46899 * 149.99870 * 1 2 3 27 27 H 1.08004 * 123.33678 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.16618 * 359.97438 * 8 7 6 29 29 H 0.96991 * 120.00178 * 180.02562 * 13 12 10 30 30 H 1.08003 * 119.99295 * 180.27700 * 18 9 8 31 31 H 1.08001 * 119.82214 * 179.72936 * 19 18 9 32 32 H 1.07993 * 124.58675 * 179.71033 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2135 -1.2236 0.0005 5 6 3.5759 -1.3483 0.0011 6 6 4.0053 -2.6620 0.0010 7 6 5.4413 -3.0378 0.0010 8 6 5.9166 -3.9604 0.9201 9 6 7.2776 -4.3113 0.9131 10 6 7.7735 -5.2503 1.8459 11 1 8.6158 -5.8749 1.5875 12 6 7.1734 -5.3705 3.1038 13 7 7.3731 -6.4447 3.8241 14 14 6.0868 -3.9978 3.7553 15 1 4.6660 -4.3042 3.4506 16 1 6.2638 -3.8816 5.2251 17 1 6.4667 -2.7164 3.1081 18 6 8.1439 -3.7267 -0.0312 19 6 7.6593 -2.8085 -0.9337 20 6 6.3160 -2.4614 -0.9276 21 9 5.8498 -1.5629 -1.8224 22 6 3.0025 -3.5830 -0.0051 23 16 1.4773 -2.8192 -0.0002 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 4.2492 -0.5038 0.0008 28 1 5.2445 -4.4071 1.6378 29 1 6.9567 -6.5282 4.6961 30 1 9.1897 -3.9962 -0.0438 31 1 8.3271 -2.3588 -1.6536 32 1 3.1524 -4.6524 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244627928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -41.933975 kcal Electronic energy + Delta-G solvation = -19754.366051 eV Core-core repulsion = 16492.443984 eV Total energy + Delta-G solvation = -3261.922066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.73924 -39.61280 -38.31129 -36.70154 -33.67471 -31.71506 -30.30294 -30.22224 -28.34264 -25.25335 -24.67887 -22.34858 -21.43097 -19.77192 -18.97386 -17.73604 -17.13980 -16.56328 -15.95991 -15.31529 -15.15649 -14.89283 -14.83349 -14.44997 -14.14666 -13.30336 -13.15045 -12.89586 -12.83628 -12.71719 -12.63405 -12.23105 -12.13520 -11.96956 -11.76463 -11.10282 -10.96009 -10.70017 -10.42163 -10.27309 -9.95217 -9.76810 -9.30191 -8.82677 -8.64861 -7.81273 -7.53202 -7.12578 -4.65122 0.34526 1.56169 1.80134 1.97110 2.34143 2.48171 2.96225 3.05220 3.15051 3.20845 3.83543 4.13624 4.24407 4.91921 5.10929 5.18258 5.21736 5.29935 5.32159 5.40003 5.57699 5.71108 5.77457 6.00119 6.21542 6.32633 6.37794 6.49665 6.62141 6.91814 7.10143 7.23624 7.34360 7.48883 7.59664 7.86291 8.14160 8.39900 8.58926 9.89014 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.005745 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.717264 B = 4872.378300 C = 5717.543065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.424 3.576 3 O -0.463 6.463 4 C -0.324 4.324 5 C -0.011 4.011 6 C -0.068 4.068 7 C -0.027 4.027 8 C -0.200 4.200 9 C 0.084 3.916 10 C -0.440 4.440 11 H 0.095 0.905 12 C 0.086 3.914 13 N -0.799 5.799 14 Si 0.901 3.099 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.242 1.242 18 C -0.180 4.180 19 C -0.108 4.108 20 C -0.029 4.029 21 F -0.163 7.163 22 C -0.209 4.209 23 S 0.208 5.792 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.111 0.889 29 H 0.288 0.712 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 5.006 -4.144 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.303 3.697 3 O -0.342 6.342 4 C -0.441 4.441 5 C -0.044 4.044 6 C -0.080 4.080 7 C -0.030 4.030 8 C -0.220 4.220 9 C 0.081 3.919 10 C -0.468 4.468 11 H 0.113 0.887 12 C -0.134 4.134 13 N -0.423 5.423 14 Si 0.727 3.273 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.165 1.165 18 C -0.200 4.200 19 C -0.127 4.127 20 C -0.050 4.050 21 F -0.142 7.142 22 C -0.346 4.346 23 S 0.477 5.523 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.100 0.900 27 H 0.171 0.829 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.106 4.827 -3.937 14.511 hybrid contribution 1.044 0.766 0.319 1.334 sum -12.062 5.593 -3.618 13.779 Atomic orbital electron populations 1.22245 0.93985 1.04660 1.04784 1.20073 0.91309 0.86549 0.71722 1.90608 1.72055 1.33625 1.37871 1.23909 0.98218 0.99228 1.22728 1.21060 0.93641 0.97580 0.92146 1.18065 0.94266 0.91689 1.03987 1.17959 0.88885 0.98801 0.97308 1.20962 0.95820 1.03298 1.01916 1.17682 0.90496 0.90834 0.92894 1.19485 1.14559 1.15663 0.97048 0.88657 1.26144 0.94567 0.95827 0.96894 1.69693 1.35990 1.24901 1.11677 0.86440 0.80022 0.83446 0.77368 1.19361 1.21321 1.16488 1.20972 0.98792 1.00288 0.99907 1.20592 0.92837 0.99480 0.99773 1.17165 0.92663 0.99362 0.95781 1.91321 1.89454 1.66501 1.66972 1.25936 0.96821 1.05055 1.06807 1.82522 1.06504 0.95125 1.68177 0.88429 0.89166 0.90039 0.82923 0.87128 0.90165 0.86951 0.87140 0.80842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.83 9.95 36.01 0.36 -1.47 16 2 C 0.42 5.98 7.05 -33.15 -0.23 5.74 16 3 O -0.46 -8.11 17.45 5.41 0.09 -8.02 16 4 C -0.32 -4.89 6.20 -38.94 -0.24 -5.13 16 5 C -0.01 -0.19 8.90 -40.11 -0.36 -0.55 16 6 C -0.07 -1.28 5.19 -106.45 -0.55 -1.83 16 7 C -0.03 -0.57 5.59 -104.89 -0.59 -1.16 16 8 C -0.20 -4.58 6.70 -38.56 -0.26 -4.83 16 9 C 0.08 2.00 5.10 -106.85 -0.55 1.45 16 10 C -0.44 -11.12 9.56 -37.78 -0.36 -11.48 16 11 H 0.10 2.50 8.06 -52.49 -0.42 2.08 16 12 C 0.09 2.13 5.40 -17.35 -0.09 2.03 16 13 N -0.80 -20.17 13.93 55.54 0.77 -19.39 16 14 Si 0.90 19.93 24.52 -169.99 -4.17 15.76 16 15 H -0.27 -5.72 6.71 56.52 0.38 -5.34 16 16 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.24 -5.55 6.87 56.52 0.39 -5.17 16 18 C -0.18 -3.91 9.78 -38.84 -0.38 -4.29 16 19 C -0.11 -2.22 9.99 -39.64 -0.40 -2.62 16 20 C -0.03 -0.64 7.23 -38.74 -0.28 -0.92 16 21 F -0.16 -3.44 16.15 2.25 0.04 -3.40 16 22 C -0.21 -3.30 10.61 29.99 0.32 -2.98 16 23 S 0.21 2.56 21.81 -107.50 -2.34 0.22 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.62 7.24 -51.93 -0.38 0.24 16 27 H 0.15 2.86 7.98 -52.48 -0.42 2.44 16 28 H 0.11 2.51 4.73 -52.49 -0.25 2.26 16 29 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 30 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 31 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.17 2.53 8.06 -52.49 -0.42 2.10 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -27.76 298.55 -7.47 -35.23 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.75 Total: 3.14 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.61 Total: -28.03 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.77 Total: -19.39 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.04 Total: -3.40 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.17 Total: 15.76 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.34 Total: 0.22 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.76 -7.47 -35.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244627928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.708 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds