Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21448 * 119.99576 * 2 1 4 4 C 1.41292 * 120.00057 * 179.97438 * 2 1 3 5 5 C 1.36810 * 125.22767 * 180.02562 * 4 2 1 6 6 C 1.38210 * 113.32785 * 180.02562 * 5 4 2 7 7 C 1.48437 * 122.76901 * 179.97438 * 6 5 4 8 8 C 1.38630 * 120.01205 * 130.02644 * 7 6 5 9 9 C 1.40552 * 119.65946 * 179.97438 * 8 7 6 10 10 C 1.41344 * 120.15349 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99637 * 150.17259 * 10 9 8 12 12 C 1.39892 * 119.99987 * 330.16468 * 10 9 8 13 13 N 1.30864 * 120.00010 * 161.71177 * 12 10 9 14 14 Si 1.86805 * 119.99978 * 341.71736 * 12 10 9 15 15 H 1.48500 * 109.46956 * 95.40987 * 14 12 10 16 16 H 1.48501 * 109.47013 * 215.40688 * 14 12 10 17 17 H 1.48496 * 109.46811 * 335.40867 * 14 12 10 18 18 C 1.40854 * 119.68885 * 359.72828 * 9 8 7 19 19 C 1.37571 * 120.00996 * 0.54449 * 18 9 8 20 20 C 1.38745 * 120.34429 * 359.45276 * 19 18 9 21 21 F 1.35098 * 119.83894 * 180.29607 * 20 19 18 22 22 C 1.36160 * 114.46425 * 0.25230 * 6 5 4 23 23 S 1.70570 * 110.83440 * 359.61633 * 22 6 5 24 24 H 1.08997 * 109.47376 * 270.00340 * 1 2 3 25 25 H 1.09002 * 109.47334 * 30.00495 * 1 2 3 26 26 H 1.09006 * 109.46899 * 149.99870 * 1 2 3 27 27 H 1.08004 * 123.33678 * 359.97438 * 5 4 2 28 28 H 1.07999 * 120.16618 * 359.97438 * 8 7 6 29 29 H 0.96991 * 120.00178 * 180.02562 * 13 12 10 30 30 H 1.08003 * 119.99295 * 180.27700 * 18 9 8 31 31 H 1.08001 * 119.82214 * 179.72936 * 19 18 9 32 32 H 1.07993 * 124.58675 * 179.71033 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0518 0.0000 4 6 2.2135 -1.2236 0.0005 5 6 3.5759 -1.3483 0.0011 6 6 4.0053 -2.6620 0.0010 7 6 5.4413 -3.0378 0.0010 8 6 5.9166 -3.9604 0.9201 9 6 7.2776 -4.3113 0.9131 10 6 7.7735 -5.2503 1.8459 11 1 8.6158 -5.8749 1.5875 12 6 7.1734 -5.3705 3.1038 13 7 7.3731 -6.4447 3.8241 14 14 6.0868 -3.9978 3.7553 15 1 4.6660 -4.3042 3.4506 16 1 6.2638 -3.8816 5.2251 17 1 6.4667 -2.7164 3.1081 18 6 8.1439 -3.7267 -0.0312 19 6 7.6593 -2.8085 -0.9337 20 6 6.3160 -2.4614 -0.9276 21 9 5.8498 -1.5629 -1.8224 22 6 3.0025 -3.5830 -0.0051 23 16 1.4773 -2.8192 -0.0002 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 4.2492 -0.5038 0.0008 28 1 5.2445 -4.4071 1.6378 29 1 6.9567 -6.5282 4.6961 30 1 9.1897 -3.9962 -0.0438 31 1 8.3271 -2.3588 -1.6536 32 1 3.1524 -4.6524 -0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244627928.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = -56.388216 kcal Electronic energy + Delta-G solvation = -19754.992833 eV Core-core repulsion = 16492.443984 eV Total energy + Delta-G solvation = -3262.548849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.052 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.45878 -40.80244 -39.85463 -38.15296 -35.49986 -32.98743 -32.09616 -31.49111 -29.55478 -26.95637 -26.07561 -23.82070 -23.10809 -21.10070 -20.37022 -19.34942 -18.55822 -18.10989 -17.46168 -16.84356 -16.65409 -16.20271 -16.12667 -15.92162 -15.64638 -15.00440 -14.74567 -14.53525 -14.14374 -14.07652 -13.73354 -13.63725 -13.54158 -13.20514 -13.06684 -12.75053 -12.52856 -12.20822 -12.16353 -11.97964 -11.57608 -11.09032 -11.02762 -10.18690 -9.88399 -9.51967 -9.06796 -8.98015 -6.55787 -0.86062 0.26879 0.44412 0.57792 0.74167 1.10440 1.21462 1.34219 1.42109 1.83555 2.04233 2.42920 3.15524 3.31563 3.69407 3.80325 4.00548 4.08720 4.11858 4.28071 4.41410 4.58666 4.59289 4.61309 4.72852 4.81264 5.01895 5.06593 5.14567 5.27290 5.36945 5.54009 5.58362 5.78098 6.09459 6.24770 6.43831 6.57995 6.71729 8.09216 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.005745 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.717264 B = 4872.378300 C = 5717.543065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.420 3.580 3 O -0.507 6.507 4 C -0.338 4.338 5 C -0.043 4.043 6 C -0.105 4.105 7 C -0.027 4.027 8 C -0.210 4.210 9 C 0.070 3.930 10 C -0.471 4.471 11 H 0.071 0.929 12 C 0.060 3.940 13 N -0.834 5.834 14 Si 0.944 3.056 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.261 1.261 18 C -0.187 4.187 19 C -0.105 4.105 20 C -0.034 4.034 21 F -0.160 7.160 22 C -0.224 4.224 23 S 0.345 5.655 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.297 0.703 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 5.572 -4.723 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.302 3.698 3 O -0.388 6.388 4 C -0.456 4.456 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.030 4.030 8 C -0.229 4.229 9 C 0.068 3.932 10 C -0.499 4.499 11 H 0.089 0.911 12 C -0.157 4.157 13 N -0.460 5.460 14 Si 0.768 3.232 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.206 4.206 19 C -0.123 4.123 20 C -0.054 4.054 21 F -0.140 7.140 22 C -0.363 4.363 23 S 0.615 5.385 24 H 0.139 0.861 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.146 0.854 28 H 0.128 0.872 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.159 0.841 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.504 5.375 -4.522 17.937 hybrid contribution 1.959 0.656 0.317 2.090 sum -14.546 6.031 -4.204 16.298 Atomic orbital electron populations 1.22295 0.89474 1.06401 1.06746 1.20866 0.93586 0.85351 0.69964 1.90596 1.73419 1.34972 1.39824 1.24357 0.97797 1.02046 1.21361 1.20845 0.94893 0.96597 0.95286 1.17957 0.93334 0.92750 1.07698 1.18230 0.90967 0.97625 0.96165 1.20989 0.95402 1.04103 1.02437 1.17855 0.91383 0.90871 0.93127 1.19462 1.14980 1.17070 0.98425 0.91125 1.26603 0.95338 0.97034 0.96696 1.69703 1.37671 1.26009 1.12585 0.85788 0.79574 0.80466 0.77351 1.17875 1.19952 1.18492 1.21175 0.99405 1.00364 0.99644 1.20886 0.93005 0.98676 0.99757 1.17489 0.93269 0.99043 0.95628 1.91327 1.89490 1.66369 1.66778 1.26293 0.98841 1.05691 1.05457 1.81987 1.02074 0.90773 1.63642 0.86061 0.87993 0.87781 0.85351 0.87160 0.89259 0.85627 0.84111 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.67 9.95 71.24 0.71 -1.96 16 2 C 0.42 10.89 7.05 26.44 0.19 11.07 16 3 O -0.51 -17.50 17.45 -3.55 -0.06 -17.56 16 4 C -0.34 -9.44 6.20 22.69 0.14 -9.30 16 5 C -0.04 -1.51 8.90 21.93 0.20 -1.32 16 6 C -0.11 -3.88 5.19 -21.05 -0.11 -3.99 16 7 C -0.03 -1.17 5.59 -20.04 -0.11 -1.28 16 8 C -0.21 -9.66 6.70 22.93 0.15 -9.51 16 9 C 0.07 3.42 5.10 -21.31 -0.11 3.32 16 10 C -0.47 -24.76 9.56 23.44 0.22 -24.53 16 11 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 12 C 0.06 3.05 5.40 85.24 0.46 3.51 16 13 N -0.83 -43.13 13.93 21.82 0.30 -42.82 16 14 Si 0.94 41.26 24.52 68.60 1.68 42.94 16 15 H -0.25 -10.38 6.71 99.48 0.67 -9.71 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.26 -12.08 6.87 99.48 0.68 -11.40 16 18 C -0.19 -8.17 9.78 22.75 0.22 -7.94 16 19 C -0.10 -4.24 9.99 22.23 0.22 -4.01 16 20 C -0.03 -1.46 7.23 22.82 0.16 -1.30 16 21 F -0.16 -6.70 16.15 44.97 0.73 -5.98 16 22 C -0.22 -6.54 10.61 67.34 0.71 -5.83 16 23 S 0.35 6.95 21.81 -56.49 -1.23 5.72 16 24 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 0.97 7.24 -2.38 -0.02 0.95 16 27 H 0.13 5.03 7.98 -2.91 -0.02 5.01 16 28 H 0.11 5.01 4.73 -2.91 -0.01 4.99 16 29 H 0.30 13.75 8.30 -92.71 -0.77 12.99 16 30 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 31 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.18 4.88 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -63.06 298.55 5.58 -57.48 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.10 Total: 13.29 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 3.06 Total: -53.07 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.30 Total: -42.82 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.73 Total: -5.98 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.68 Total: 42.94 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.23 Total: 5.72 kcal Total: -63.06 5.58 -57.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244627928.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.088 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds