Wall clock time and date at job start Tue Mar 31 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35707 * 116.99959 * 2 1 4 4 C 1.38663 * 119.59605 * 180.25519 * 3 2 1 5 5 C 1.39805 * 118.94621 * 180.25230 * 4 3 2 6 6 C 1.47894 * 120.90647 * 179.77641 * 5 4 3 7 7 N 1.32552 * 119.98441 * 128.42310 * 6 5 4 8 8 C 1.31732 * 121.72863 * 180.24257 * 7 6 5 9 9 C 1.38881 * 121.50064 * 359.77642 * 8 7 6 10 10 C 1.36879 * 119.78727 * 359.97248 * 9 8 7 11 11 C 1.41136 * 118.39340 * 0.02562 * 10 9 8 12 12 C 1.40896 * 120.71850 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00162 * 154.45676 * 12 11 10 14 14 C 1.40113 * 120.00325 * 334.17923 * 12 11 10 15 15 N 1.30747 * 119.99599 * 344.10643 * 14 12 11 16 16 Si 1.86796 * 120.00002 * 164.10084 * 14 12 11 17 17 H 1.48496 * 109.47584 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47023 * 120.00232 * 16 14 12 19 19 H 1.48499 * 109.47135 * 240.00020 * 16 14 12 20 20 C 1.40266 * 118.18153 * 359.50140 * 5 4 3 21 21 Cl 1.73604 * 120.45625 * 180.23162 * 20 5 4 22 22 C 1.37951 * 119.08620 * 0.25330 * 20 5 4 23 23 N 1.31996 * 120.96476 * 359.97438 * 22 20 5 24 24 H 1.09005 * 109.47252 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47181 * 299.99995 * 1 2 3 26 26 H 1.08996 * 109.47009 * 60.00017 * 1 2 3 27 27 H 1.07998 * 120.52708 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.25264 * 179.74542 * 8 7 6 29 29 H 1.07996 * 120.10495 * 179.97438 * 9 8 7 30 30 H 1.08005 * 120.80565 * 180.02562 * 10 9 8 31 31 H 0.97002 * 119.99591 * 179.97438 * 15 14 12 32 32 H 1.08005 * 119.51523 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4303 1.2720 -0.0054 5 6 4.0509 2.5248 0.0001 6 6 5.5251 2.6422 -0.0004 7 7 6.1282 3.4103 -0.8966 8 6 7.4390 3.5362 -0.9313 9 6 8.2560 2.8724 -0.0254 10 6 7.6978 2.0667 0.9301 11 6 6.2928 1.9367 0.9611 12 6 5.6666 1.1198 1.9233 13 1 4.6487 1.3214 2.2228 14 6 6.3624 0.0425 2.4874 15 7 7.4538 -0.4001 1.9195 16 14 5.7310 -0.7614 4.0508 17 1 4.4872 -0.0796 4.4905 18 1 5.4433 -2.1946 3.7892 19 1 6.7602 -0.6495 5.1155 20 6 3.2370 3.6672 0.0001 21 17 3.9452 5.2522 0.0006 22 6 1.8660 3.5138 0.0000 23 7 1.3169 2.3135 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0205 0.3675 -0.0100 28 1 7.8887 4.1696 -1.6816 29 1 9.3282 2.9915 -0.0746 30 1 8.3175 1.5431 1.6430 31 1 7.9357 -1.1458 2.3102 32 1 1.2328 4.3888 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245033996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:53 Heat of formation + Delta-G solvation = 14.237224 kcal Electronic energy + Delta-G solvation = -20269.183815 eV Core-core repulsion = 17027.573770 eV Total energy + Delta-G solvation = -3241.610045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17331 -38.52441 -37.38130 -35.74108 -34.30076 -32.79017 -30.77300 -30.05322 -29.30923 -26.95040 -25.88847 -23.40215 -22.86559 -21.54543 -20.62471 -17.82771 -17.49550 -16.72475 -15.92440 -15.77197 -15.60921 -14.93371 -14.53933 -14.05600 -13.98691 -13.62282 -13.25676 -12.70716 -12.46260 -12.11218 -11.87867 -11.69917 -11.57661 -11.48677 -11.45485 -11.16037 -10.69482 -10.57840 -10.50897 -10.05428 -9.55984 -9.28908 -9.17949 -8.29126 -8.15781 -7.92805 -7.64270 -7.05017 -4.67491 1.51135 1.55462 2.51728 2.75660 2.83900 2.94123 3.00180 3.09251 3.46451 3.72854 4.16170 4.42823 4.64295 5.13869 5.32701 5.44120 5.47223 5.53898 5.59729 5.75264 6.02632 6.17210 6.21673 6.33231 6.49995 6.62054 6.77778 6.86160 6.95623 7.05009 7.56179 7.57993 7.67178 7.77203 8.17200 8.23088 8.45081 8.52483 9.46126 9.83362 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.008709 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.976185 B = 3214.302613 C = 5044.565163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.307 6.307 3 C 0.309 3.691 4 C -0.155 4.155 5 C 0.115 3.885 6 C -0.009 4.009 7 N -0.430 5.430 8 C -0.030 4.030 9 C -0.142 4.142 10 C -0.128 4.128 11 C 0.094 3.906 12 C -0.435 4.435 13 H 0.087 0.913 14 C 0.077 3.923 15 N -0.777 5.777 16 Si 0.910 3.090 17 H -0.256 1.256 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.115 4.115 21 Cl -0.054 7.054 22 C 0.137 3.863 23 N -0.545 5.545 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.287 0.713 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 1.316 -0.169 6.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.214 6.214 3 C 0.132 3.868 4 C -0.176 4.176 5 C 0.106 3.894 6 C -0.146 4.146 7 N -0.137 5.137 8 C -0.192 4.192 9 C -0.163 4.163 10 C -0.154 4.154 11 C 0.089 3.911 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.144 4.144 15 N -0.400 5.400 16 Si 0.733 3.267 17 H -0.180 1.180 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.146 4.146 21 Cl -0.025 7.025 22 C -0.019 4.019 23 N -0.269 5.269 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.171 0.829 28 H 0.140 0.860 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.823 1.337 -0.751 7.972 hybrid contribution 1.169 -0.595 1.307 1.852 sum -6.654 0.742 0.556 6.718 Atomic orbital electron populations 1.22772 0.78061 1.02359 1.02135 1.86261 1.22192 1.24654 1.88302 1.19674 0.89231 0.84313 0.93618 1.21236 0.90975 0.99374 1.06046 1.18444 0.92562 0.89634 0.88778 1.18967 0.89730 1.06989 0.98884 1.66972 1.11672 1.13633 1.21430 1.21649 0.88853 1.06025 1.02722 1.21470 0.98992 0.98441 0.97362 1.21395 0.95111 0.99271 0.99654 1.18245 0.92170 0.90113 0.90584 1.19661 1.00480 1.08624 1.17532 0.89544 1.26028 0.94002 0.96481 0.97910 1.69749 1.14118 1.20517 1.35626 0.86198 0.80391 0.79342 0.80768 1.17961 1.19431 1.19354 1.21987 0.93529 0.87761 1.11304 1.98326 1.84479 1.22669 1.97022 1.22009 0.90533 0.93912 0.95436 1.67221 1.40146 0.98207 1.21361 0.89122 0.92572 0.92628 0.82935 0.85971 0.88155 0.85460 0.90177 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 101.05 1.05 1.59 16 2 O -0.31 -5.31 10.47 -18.83 -0.20 -5.50 16 3 C 0.31 5.89 7.48 -17.20 -0.13 5.76 16 4 C -0.15 -3.24 8.09 -38.84 -0.31 -3.56 16 5 C 0.11 2.52 5.02 -104.60 -0.52 1.99 16 6 C -0.01 -0.21 5.89 -82.23 -0.48 -0.70 16 7 N -0.43 -10.17 9.19 -9.16 -0.08 -10.25 16 8 C -0.03 -0.65 11.16 -17.36 -0.19 -0.85 16 9 C -0.14 -3.11 10.03 -39.84 -0.40 -3.51 16 10 C -0.13 -3.09 8.74 -38.97 -0.34 -3.43 16 11 C 0.09 2.34 5.57 -106.42 -0.59 1.74 16 12 C -0.43 -10.55 7.33 -37.87 -0.28 -10.82 16 13 H 0.09 2.10 6.67 -52.48 -0.35 1.75 16 14 C 0.08 1.76 5.19 -17.31 -0.09 1.67 16 15 N -0.78 -18.17 10.97 55.56 0.61 -17.56 16 16 Si 0.91 17.46 29.59 -169.99 -5.03 12.43 16 17 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 20 C -0.12 -2.27 6.37 -38.92 -0.25 -2.52 16 21 Cl -0.05 -1.00 27.33 -51.86 -1.42 -2.42 16 22 C 0.14 2.36 10.97 -17.59 -0.19 2.17 16 23 N -0.54 -9.77 9.19 -13.39 -0.12 -9.89 16 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.15 3.32 7.52 -52.49 -0.39 2.93 16 28 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.13 3.09 6.30 -52.48 -0.33 2.76 16 31 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 32 H 0.16 2.19 8.06 -52.48 -0.42 1.76 16 LS Contribution 297.58 15.07 4.48 4.48 Total: -1.00 -26.55 297.58 -7.24 -33.79 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -2.74 Total: 5.39 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -2.74 Total: -10.46 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.40 Total: -37.71 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.20 Total: -5.50 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.42 Total: -2.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.55 -7.24 -33.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245033996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.028 kcal (2) G-P(sol) polarization free energy of solvation -26.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds