Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35707 * 116.99959 * 2 1 4 4 C 1.38663 * 119.59605 * 180.25519 * 3 2 1 5 5 C 1.39805 * 118.94621 * 180.25230 * 4 3 2 6 6 C 1.47894 * 120.90647 * 179.77641 * 5 4 3 7 7 N 1.32552 * 119.98441 * 128.42310 * 6 5 4 8 8 C 1.31732 * 121.72863 * 180.24257 * 7 6 5 9 9 C 1.38881 * 121.50064 * 359.77642 * 8 7 6 10 10 C 1.36879 * 119.78727 * 359.97248 * 9 8 7 11 11 C 1.41136 * 118.39340 * 0.02562 * 10 9 8 12 12 C 1.40896 * 120.71850 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00162 * 154.45676 * 12 11 10 14 14 C 1.40113 * 120.00325 * 334.17923 * 12 11 10 15 15 N 1.30747 * 119.99599 * 344.10643 * 14 12 11 16 16 Si 1.86796 * 120.00002 * 164.10084 * 14 12 11 17 17 H 1.48496 * 109.47584 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47023 * 120.00232 * 16 14 12 19 19 H 1.48499 * 109.47135 * 240.00020 * 16 14 12 20 20 C 1.40266 * 118.18153 * 359.50140 * 5 4 3 21 21 Cl 1.73604 * 120.45625 * 180.23162 * 20 5 4 22 22 C 1.37951 * 119.08620 * 0.25330 * 20 5 4 23 23 N 1.31996 * 120.96476 * 359.97438 * 22 20 5 24 24 H 1.09005 * 109.47252 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47181 * 299.99995 * 1 2 3 26 26 H 1.08996 * 109.47009 * 60.00017 * 1 2 3 27 27 H 1.07998 * 120.52708 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.25264 * 179.74542 * 8 7 6 29 29 H 1.07996 * 120.10495 * 179.97438 * 9 8 7 30 30 H 1.08005 * 120.80565 * 180.02562 * 10 9 8 31 31 H 0.97002 * 119.99591 * 179.97438 * 15 14 12 32 32 H 1.08005 * 119.51523 * 180.02562 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4303 1.2720 -0.0054 5 6 4.0509 2.5248 0.0001 6 6 5.5251 2.6422 -0.0004 7 7 6.1282 3.4103 -0.8966 8 6 7.4390 3.5362 -0.9313 9 6 8.2560 2.8724 -0.0254 10 6 7.6978 2.0667 0.9301 11 6 6.2928 1.9367 0.9611 12 6 5.6666 1.1198 1.9233 13 1 4.6487 1.3214 2.2228 14 6 6.3624 0.0425 2.4874 15 7 7.4538 -0.4001 1.9195 16 14 5.7310 -0.7614 4.0508 17 1 4.4872 -0.0796 4.4905 18 1 5.4433 -2.1946 3.7892 19 1 6.7602 -0.6495 5.1155 20 6 3.2370 3.6672 0.0001 21 17 3.9452 5.2522 0.0006 22 6 1.8660 3.5138 0.0000 23 7 1.3169 2.3135 -0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.0205 0.3675 -0.0100 28 1 7.8887 4.1696 -1.6816 29 1 9.3282 2.9915 -0.0746 30 1 8.3175 1.5431 1.6430 31 1 7.9357 -1.1458 2.3102 32 1 1.2328 4.3888 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245033996.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -1.349875 kcal Electronic energy + Delta-G solvation = -20269.859723 eV Core-core repulsion = 17027.573770 eV Total energy + Delta-G solvation = -3242.285952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.64685 -40.20839 -38.80808 -37.21670 -36.05497 -34.38479 -32.54475 -31.52253 -30.96873 -28.14581 -27.62055 -24.98839 -24.39603 -23.28571 -22.23803 -19.40345 -19.16063 -18.17783 -17.52894 -17.34706 -16.96730 -16.54761 -16.22340 -15.59589 -15.43183 -15.06506 -14.66599 -14.34466 -14.14402 -13.71314 -13.49910 -13.31811 -13.19147 -12.93870 -12.78206 -12.68339 -12.27748 -11.99565 -11.86987 -11.76721 -11.26527 -10.86020 -10.73539 -10.07906 -9.93648 -9.49891 -9.28423 -8.77269 -6.48758 -0.08289 0.06703 0.81751 1.10101 1.26560 1.35780 1.47254 1.49797 2.13342 2.13956 2.63209 2.69701 3.26157 3.59649 3.66215 3.99952 4.01815 4.39459 4.48521 4.50013 4.55081 4.68593 4.73822 4.76521 4.81348 4.97099 5.05050 5.17352 5.27282 5.36249 5.79681 5.88127 5.98670 6.19788 6.43164 6.66469 6.70463 6.73708 7.67501 8.14433 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.008709 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.976185 B = 3214.302613 C = 5044.565163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.319 6.319 3 C 0.314 3.686 4 C -0.171 4.171 5 C 0.093 3.907 6 C -0.020 4.020 7 N -0.443 5.443 8 C -0.036 4.036 9 C -0.139 4.139 10 C -0.151 4.151 11 C 0.067 3.933 12 C -0.454 4.454 13 H 0.077 0.923 14 C 0.044 3.956 15 N -0.803 5.803 16 Si 0.973 3.027 17 H -0.262 1.262 18 H -0.262 1.262 19 H -0.259 1.259 20 C -0.128 4.128 21 Cl -0.048 7.048 22 C 0.154 3.846 23 N -0.536 5.536 24 H 0.123 0.877 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.153 0.847 29 H 0.132 0.868 30 H 0.119 0.881 31 H 0.296 0.704 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 1.535 0.026 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C 0.137 3.863 4 C -0.193 4.193 5 C 0.084 3.916 6 C -0.156 4.156 7 N -0.151 5.151 8 C -0.198 4.198 9 C -0.159 4.159 10 C -0.177 4.177 11 C 0.062 3.938 12 C -0.483 4.483 13 H 0.095 0.905 14 C -0.174 4.174 15 N -0.427 5.427 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.187 1.187 19 H -0.183 1.183 20 C -0.158 4.158 21 Cl -0.020 7.020 22 C -0.003 4.003 23 N -0.261 5.261 24 H 0.141 0.859 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.106 1.548 -0.570 9.254 hybrid contribution 1.512 -0.631 1.154 2.004 sum -7.594 0.917 0.585 7.671 Atomic orbital electron populations 1.23131 0.75445 1.04784 1.02599 1.86256 1.24785 1.23789 1.87791 1.19658 0.88743 0.85286 0.92637 1.21070 0.91980 0.98464 1.07817 1.18525 0.92006 0.90897 0.90157 1.19284 0.90987 1.06744 0.98621 1.67042 1.12483 1.14011 1.21520 1.22221 0.88618 1.05888 1.03110 1.21769 1.00690 0.97192 0.96261 1.21450 0.95020 1.00518 1.00701 1.18577 0.92926 0.90944 0.91341 1.19686 1.00359 1.09655 1.18552 0.90516 1.26709 0.94061 0.96468 1.00204 1.69766 1.14970 1.21162 1.36769 0.85271 0.79647 0.78470 0.77296 1.18569 1.18654 1.18281 1.22103 0.94293 0.87412 1.12011 1.98319 1.84649 1.21959 1.97044 1.22615 0.89995 0.94839 0.92817 1.67384 1.39494 0.98098 1.21077 0.85858 0.92181 0.91985 0.84982 0.82985 0.85031 0.86336 0.89290 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.38 113.37 1.18 1.98 16 2 O -0.32 -10.70 10.47 -90.28 -0.95 -11.64 16 3 C 0.31 11.80 7.48 84.73 0.63 12.43 16 4 C -0.17 -7.36 8.09 22.75 0.18 -7.18 16 5 C 0.09 4.14 5.02 -19.85 -0.10 4.04 16 6 C -0.02 -0.96 5.89 42.48 0.25 -0.71 16 7 N -0.44 -21.00 9.19 -182.91 -1.68 -22.68 16 8 C -0.04 -1.56 11.16 84.86 0.95 -0.62 16 9 C -0.14 -6.03 10.03 22.10 0.22 -5.80 16 10 C -0.15 -7.41 8.74 22.66 0.20 -7.21 16 11 C 0.07 3.44 5.57 -21.03 -0.12 3.32 16 12 C -0.45 -22.80 7.33 23.38 0.17 -22.63 16 13 H 0.08 3.88 6.67 -2.91 -0.02 3.86 16 14 C 0.04 2.06 5.19 85.31 0.44 2.50 16 15 N -0.80 -38.28 10.97 21.86 0.24 -38.05 16 16 Si 0.97 35.98 29.59 68.60 2.03 38.01 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 18 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 20 C -0.13 -4.93 6.37 22.69 0.14 -4.79 16 21 Cl -0.05 -1.76 27.33 -2.72 -0.07 -1.84 16 22 C 0.15 4.97 10.97 84.60 0.93 5.89 16 23 N -0.54 -18.20 9.19 -309.12 -2.84 -21.04 16 24 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 26 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 27 H 0.13 6.10 7.52 -2.91 -0.02 6.08 16 28 H 0.15 5.54 8.06 -2.91 -0.02 5.52 16 29 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 30 H 0.12 5.92 6.30 -2.91 -0.02 5.91 16 31 H 0.30 12.62 8.29 -92.71 -0.77 11.85 16 32 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -57.74 297.58 2.97 -54.77 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 1.16 Total: 21.24 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 5.08 Total: -18.77 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -4.28 Total: -81.76 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.95 Total: -11.64 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.84 kcal Total: -57.74 2.97 -54.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245033996.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.417 kcal (2) G-P(sol) polarization free energy of solvation -57.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds