Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35703 * 117.00000 * 2 1 4 4 C 1.38727 * 119.61596 * 179.97438 * 3 2 1 5 5 C 1.39520 * 118.98276 * 179.97438 * 4 3 2 6 6 C 1.48359 * 120.88255 * 179.97438 * 5 4 3 7 7 C 1.39858 * 119.60220 * 47.90843 * 6 5 4 8 8 C 1.38726 * 119.46202 * 180.02562 * 7 6 5 9 9 C 1.38273 * 118.68503 * 0.02562 * 8 7 6 10 10 C 1.40699 * 119.17825 * 359.97438 * 9 8 7 11 11 C 1.41391 * 119.76426 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00344 * 359.97438 * 11 10 9 13 13 C 1.40030 * 120.00111 * 180.02562 * 11 10 9 14 14 N 1.30745 * 119.99499 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99967 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47118 * 89.99742 * 15 13 11 17 17 H 1.48502 * 109.46773 * 209.99574 * 15 13 11 18 18 H 1.48492 * 109.47212 * 329.99706 * 15 13 11 19 19 N 1.32208 * 119.60642 * 227.63898 * 6 5 4 20 20 C 1.40015 * 118.23539 * 359.75783 * 5 4 3 21 21 Cl 1.73602 * 120.43996 * 180.23890 * 20 5 4 22 22 C 1.37994 * 119.11853 * 0.50684 * 20 5 4 23 23 N 1.31984 * 120.93345 * 359.47924 * 22 20 5 24 24 H 1.08998 * 109.47263 * 299.99855 * 1 2 3 25 25 H 1.09006 * 109.47385 * 59.99963 * 1 2 3 26 26 H 1.09001 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.50396 * 359.97438 * 4 3 2 28 28 H 1.07994 * 120.27210 * 0.02562 * 7 6 5 29 29 H 1.07996 * 120.65875 * 180.02562 * 8 7 6 30 30 H 1.07995 * 120.41089 * 180.02562 * 9 8 7 31 31 H 0.96996 * 119.99689 * 180.02562 * 14 13 11 32 32 H 1.07999 * 119.53114 * 179.75311 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4309 1.2724 0.0005 5 6 4.0505 2.5225 0.0000 6 6 5.5295 2.6393 0.0011 7 6 6.2832 1.8803 -0.9000 8 6 7.6660 1.9914 -0.8961 9 6 8.2599 2.8551 0.0057 10 6 7.4473 3.5916 0.8872 11 6 8.0416 4.4780 1.8148 12 1 9.1156 4.5875 1.8453 13 6 7.2377 5.2131 2.6947 14 7 5.9375 5.0801 2.6580 15 14 8.0229 6.3835 3.9206 16 1 8.1515 7.7298 3.3072 17 1 7.1726 6.4719 5.1349 18 1 9.3686 5.8792 4.2943 19 7 6.1190 3.4636 0.8502 20 6 3.2395 3.6638 -0.0063 21 17 3.9501 5.2477 -0.0136 22 6 1.8679 3.5129 -0.0010 23 7 1.3173 2.3134 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0210 0.3679 0.0014 28 1 5.7927 1.2132 -1.5933 29 1 8.2667 1.4148 -1.5838 30 1 9.3340 2.9636 0.0326 31 1 5.3806 5.5896 3.2673 32 1 1.2360 4.3888 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245037299.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = 10.911395 kcal Electronic energy + Delta-G solvation = -20015.137075 eV Core-core repulsion = 16773.382811 eV Total energy + Delta-G solvation = -3241.754264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69900 -40.05223 -38.84877 -37.10019 -35.62748 -34.23094 -32.39239 -31.59503 -31.00912 -28.25204 -27.44523 -25.23864 -24.38124 -23.06907 -22.22981 -19.57033 -18.93201 -18.24138 -17.43452 -17.03966 -16.95755 -16.35797 -16.01494 -15.87302 -15.42356 -15.05633 -14.72101 -14.34289 -14.07053 -13.79279 -13.43448 -12.91649 -12.82288 -12.77853 -12.71571 -12.61616 -12.24916 -11.88474 -11.81615 -11.75821 -11.25700 -10.88999 -10.80098 -10.01615 -9.48903 -9.48072 -9.25995 -8.22240 -6.44780 -0.18181 -0.00751 0.94079 1.19879 1.36706 1.43074 1.52617 1.55339 2.06832 2.25250 2.57461 2.89903 3.19307 3.52654 3.80304 3.91344 4.00940 4.34330 4.42045 4.47993 4.54252 4.64070 4.71778 4.75929 4.85523 4.92220 4.98178 5.20856 5.24046 5.45125 5.67433 5.85522 6.12752 6.15037 6.27709 6.63109 6.76657 6.98265 8.12824 8.48388 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.005601 C = 0.004896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.235110 B = 4997.563847 C = 5717.306004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.316 3.684 4 C -0.173 4.173 5 C 0.055 3.945 6 C 0.148 3.852 7 C -0.293 4.293 8 C -0.056 4.056 9 C -0.286 4.286 10 C 0.222 3.778 11 C -0.462 4.462 12 H 0.086 0.914 13 C 0.030 3.970 14 N -0.727 5.727 15 Si 0.975 3.025 16 H -0.267 1.267 17 H -0.271 1.271 18 H -0.259 1.259 19 N -0.468 5.468 20 C -0.110 4.110 21 Cl -0.037 7.037 22 C 0.150 3.850 23 N -0.530 5.530 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.275 0.725 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 -4.009 -3.581 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.220 6.220 3 C 0.138 3.862 4 C -0.194 4.194 5 C 0.046 3.954 6 C 0.003 3.997 7 C -0.317 4.317 8 C -0.080 4.080 9 C -0.309 4.309 10 C 0.097 3.903 11 C -0.493 4.493 12 H 0.104 0.896 13 C -0.194 4.194 14 N -0.347 5.347 15 Si 0.796 3.204 16 H -0.192 1.192 17 H -0.196 1.196 18 H -0.182 1.182 19 N -0.180 5.180 20 C -0.140 4.140 21 Cl -0.008 7.008 22 C -0.005 4.005 23 N -0.255 5.255 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.171 0.829 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.367 -3.650 -2.883 11.362 hybrid contribution 1.749 0.365 -0.065 1.788 sum -8.617 -3.285 -2.948 9.682 Atomic orbital electron populations 1.23146 0.75366 1.04946 1.02553 1.86239 1.24765 1.23315 1.87716 1.19669 0.88860 0.85305 0.92409 1.21071 0.92321 0.97978 1.08059 1.18907 0.92422 0.91688 0.92366 1.19823 0.91297 0.94349 0.94259 1.21456 0.94618 1.08779 1.06806 1.21164 0.94322 0.96014 0.96533 1.22020 0.99635 1.05767 1.03484 1.18953 0.87955 0.91661 0.91743 1.19883 0.94891 1.19902 1.14612 0.89586 1.26774 0.95168 0.98334 0.99108 1.70238 1.05262 1.30312 1.28925 0.85315 0.79292 0.78326 0.77468 1.19190 1.19587 1.18239 1.68824 1.10841 1.17117 1.21255 1.22092 0.94346 0.88378 1.09173 1.98390 1.84130 1.21680 1.96622 1.22589 0.89957 0.94922 0.93079 1.67385 1.39762 0.98184 1.20163 0.92414 0.92001 0.85549 0.82854 0.86074 0.84613 0.87137 0.91396 0.78921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.38 113.37 1.18 1.84 16 2 O -0.31 -8.74 10.47 -90.24 -0.95 -9.69 16 3 C 0.32 10.29 7.48 84.75 0.63 10.93 16 4 C -0.17 -6.21 9.50 22.70 0.22 -6.00 16 5 C 0.06 2.29 5.63 -19.84 -0.11 2.18 16 6 C 0.15 6.99 5.94 42.18 0.25 7.25 16 7 C -0.29 -12.63 9.56 22.78 0.22 -12.41 16 8 C -0.06 -2.39 10.15 22.39 0.23 -2.16 16 9 C -0.29 -13.67 9.83 22.88 0.22 -13.44 16 10 C 0.22 11.96 6.55 40.27 0.26 12.23 16 11 C -0.46 -24.42 9.14 23.48 0.21 -24.20 16 12 H 0.09 4.29 7.85 -2.91 -0.02 4.26 16 13 C 0.03 1.49 5.50 85.29 0.47 1.96 16 14 N -0.73 -37.51 11.46 21.84 0.25 -37.26 16 15 Si 0.97 37.79 29.56 68.60 2.03 39.82 16 16 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 17 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 19 N -0.47 -24.87 6.44 -178.19 -1.15 -26.02 16 20 C -0.11 -4.26 6.35 22.64 0.14 -4.12 16 21 Cl -0.04 -1.54 27.15 -2.72 -0.07 -1.61 16 22 C 0.15 4.80 10.97 84.61 0.93 5.73 16 23 N -0.53 -16.71 9.19 -309.09 -2.84 -19.55 16 24 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 25 H 0.06 1.16 8.10 -2.38 -0.02 1.14 16 26 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.15 5.13 8.04 -2.91 -0.02 5.11 16 28 H 0.12 4.52 8.01 -2.91 -0.02 4.49 16 29 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 30 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 31 H 0.28 13.15 8.29 -92.71 -0.77 12.38 16 32 H 0.19 4.83 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -61.42 303.28 3.28 -58.14 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.15 Total: 16.40 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 4.85 Total: -20.23 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -3.74 Total: -82.83 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.95 Total: -9.69 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.07 Total: -1.61 kcal Total: -61.42 3.28 -58.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245037299.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.048 kcal (2) G-P(sol) polarization free energy of solvation -61.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds