Wall clock time and date at job start Tue Mar 31 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48497 * 109.46945 * 270.00349 * 3 2 1 5 5 H 1.48504 * 109.46773 * 30.00335 * 3 2 1 6 6 H 1.48499 * 109.47178 * 150.00080 * 3 2 1 7 7 C 1.38640 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00286 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.35674 * 116.99927 * 185.06521 * 9 7 2 11 11 C 1.38753 * 120.13413 * 354.40430 * 10 9 7 12 12 C 1.38119 * 120.04683 * 180.02562 * 11 10 9 13 13 C 1.38446 * 120.33476 * 359.71339 * 12 11 10 14 14 C 1.38011 * 120.26494 * 0.56070 * 13 12 11 15 15 C 1.39307 * 119.94449 * 359.44681 * 14 13 12 16 16 C 1.48242 * 120.16076 * 180.29887 * 15 14 13 17 17 C 1.39352 * 120.14788 * 64.99500 * 16 15 14 18 18 C 1.38104 * 119.90995 * 180.02562 * 17 16 15 19 19 Cl 1.73594 * 119.88907 * 180.02562 * 18 17 16 20 20 C 1.38490 * 120.21429 * 0.02562 * 18 17 16 21 21 C 1.38203 * 120.30408 * 359.97438 * 20 18 17 22 22 C 1.38550 * 120.07955 * 359.72115 * 21 20 18 23 23 O 1.35874 * 120.10893 * 180.30207 * 22 21 20 24 24 H 0.96996 * 120.00298 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.97533 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.83285 * 179.97438 * 12 11 10 27 27 H 1.07996 * 119.86697 * 180.28669 * 13 12 11 28 28 H 1.08001 * 120.02358 * 179.71618 * 14 13 12 29 29 H 1.07993 * 120.04302 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.85018 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.95774 * 180.02562 * 21 20 18 32 32 H 0.96701 * 113.99839 * 270.27531 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0697 -3.5037 0.1057 11 6 3.4557 -3.4403 0.0912 12 6 4.2021 -4.5975 0.1989 13 6 3.5745 -5.8249 0.3276 14 6 2.1967 -5.9040 0.3378 15 6 1.4328 -4.7441 0.2299 16 6 -0.0474 -4.8229 0.2470 17 6 -0.7118 -5.2606 1.3910 18 6 -2.0909 -5.3325 1.4014 19 17 -2.9181 -5.8772 2.8271 20 6 -2.8161 -4.9716 0.2781 21 6 -2.1663 -4.5363 -0.8613 22 6 -0.7834 -4.4533 -0.8832 23 8 -0.1442 -4.0195 -2.0010 24 1 -0.4850 0.8400 0.0004 25 1 3.9512 -2.4856 -0.0051 26 1 5.2807 -4.5442 0.1869 27 1 4.1656 -6.7244 0.4160 28 1 1.7113 -6.8639 0.4338 29 1 -0.1490 -5.5439 2.2681 30 1 -3.8944 -5.0306 0.2925 31 1 -2.7373 -4.2558 -1.7340 32 1 0.0822 -4.7244 -2.6231 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245051817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:44 Heat of formation + Delta-G solvation = -24.215880 kcal Electronic energy + Delta-G solvation = -20234.909572 eV Core-core repulsion = 16959.339324 eV Total energy + Delta-G solvation = -3275.570248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74852 -38.50751 -36.72743 -36.34745 -35.55644 -32.38415 -32.01579 -29.55028 -29.10483 -27.95927 -25.34888 -23.15360 -22.19293 -21.37517 -20.55643 -17.98567 -17.93855 -17.13188 -16.07817 -15.58358 -15.10037 -14.68052 -14.42892 -14.29980 -13.79057 -13.50491 -13.45309 -12.94844 -12.82032 -12.54780 -12.06112 -11.89448 -11.68676 -11.35688 -10.99594 -10.93068 -10.85465 -10.69886 -10.67474 -10.44500 -10.02208 -9.34605 -8.84930 -8.69727 -8.22627 -7.90227 -7.18865 -6.43435 -4.01403 1.40540 1.55352 2.12544 2.36557 2.41507 3.12978 3.13724 3.18256 3.87479 3.96348 4.50863 4.64560 5.07364 5.09033 5.18299 5.24615 5.43600 5.61565 5.74643 5.78935 5.95116 6.02857 6.22592 6.26687 6.39690 6.48006 6.65993 6.72994 6.87314 6.95561 7.07342 7.20336 7.33898 7.38376 7.77092 7.98644 8.18328 9.00639 9.71200 10.72995 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.006292 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.146639 B = 4448.876309 C = 5561.460386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.152 6.152 10 C 0.178 3.822 11 C -0.237 4.237 12 C -0.066 4.066 13 C -0.221 4.221 14 C -0.058 4.058 15 C -0.142 4.142 16 C -0.019 4.019 17 C -0.088 4.088 18 C -0.046 4.046 19 Cl -0.085 7.085 20 C -0.105 4.105 21 C -0.136 4.136 22 C 0.143 3.857 23 O -0.472 6.472 24 H 0.269 0.731 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 -10.534 -0.449 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.108 0.892 9 O -0.053 6.053 10 C 0.122 3.878 11 C -0.257 4.257 12 C -0.084 4.084 13 C -0.240 4.240 14 C -0.076 4.076 15 C -0.144 4.144 16 C -0.020 4.020 17 C -0.107 4.107 18 C -0.072 4.072 19 Cl -0.056 7.056 20 C -0.123 4.123 21 C -0.154 4.154 22 C 0.097 3.903 23 O -0.280 6.280 24 H 0.079 0.921 25 H 0.146 0.854 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.952 -9.771 -0.083 9.965 hybrid contribution 0.551 0.488 -0.080 0.741 sum -1.401 -9.283 -0.163 9.390 Atomic orbital electron populations 1.70066 1.05883 1.27565 1.44916 1.25268 0.95791 0.98741 0.96455 0.85757 0.78974 0.80256 0.78717 1.19865 1.20261 1.19202 1.21336 0.91749 0.80968 1.52966 0.89172 1.84017 1.33860 1.11077 1.76329 1.19255 0.89842 0.87460 0.91234 1.21121 0.93567 0.99110 1.11874 1.20817 0.98486 0.92383 0.96719 1.20468 0.94052 0.96996 1.12502 1.20663 0.93475 0.95729 0.97733 1.17549 0.90116 0.91467 1.15247 1.18864 0.92931 0.97344 0.92844 1.20980 0.91704 1.00027 0.97994 1.20680 0.92432 1.05384 0.88715 1.98330 1.78930 1.88715 1.39637 1.20765 0.99805 1.00220 0.91553 1.21232 0.93843 1.01366 0.98986 1.18547 0.89620 0.94405 0.87701 1.85023 1.78127 1.34990 1.29885 0.92071 0.85428 0.87507 0.87527 0.87056 0.85007 0.85234 0.84907 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.02 13.67 55.48 0.76 -24.26 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 8 H 0.09 2.33 5.21 -52.49 -0.27 2.05 16 9 O -0.15 -4.26 8.72 0.32 0.00 -4.26 16 10 C 0.18 4.25 6.33 -38.74 -0.25 4.01 16 11 C -0.24 -5.11 9.16 -39.43 -0.36 -5.47 16 12 C -0.07 -1.18 10.03 -39.55 -0.40 -1.58 16 13 C -0.22 -3.72 10.03 -39.59 -0.40 -4.12 16 14 C -0.06 -1.01 9.73 -39.27 -0.38 -1.39 16 15 C -0.14 -2.94 4.96 -104.73 -0.52 -3.46 16 16 C -0.02 -0.37 4.96 -104.77 -0.52 -0.89 16 17 C -0.09 -1.58 9.51 -39.22 -0.37 -1.95 16 18 C -0.05 -0.75 6.31 -39.54 -0.25 -1.00 16 19 Cl -0.08 -1.22 28.95 -51.86 -1.50 -2.72 16 20 C -0.10 -1.63 9.81 -39.50 -0.39 -2.02 16 21 C -0.14 -2.26 9.98 -39.48 -0.39 -2.65 16 22 C 0.14 2.74 6.39 -38.87 -0.25 2.49 16 23 O -0.47 -9.17 12.46 -19.34 -0.24 -9.41 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 26 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.38 5.13 9.06 45.56 0.41 5.54 16 LS Contribution 303.42 15.07 4.57 4.57 Total: -1.00 -31.87 303.42 -7.54 -39.40 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -1.83 Total: 8.74 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.28 Total: -27.64 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.76 Total: -24.26 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.24 Total: -13.67 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.87 -7.54 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245051817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.188 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds