Wall clock time and date at job start Tue Mar 31 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 119.99924 * 2 1 4 4 H 1.48497 * 109.46945 * 270.00349 * 3 2 1 5 5 H 1.48504 * 109.46773 * 30.00335 * 3 2 1 6 6 H 1.48499 * 109.47178 * 150.00080 * 3 2 1 7 7 C 1.38640 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00286 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.35674 * 116.99927 * 185.06521 * 9 7 2 11 11 C 1.38753 * 120.13413 * 354.40430 * 10 9 7 12 12 C 1.38119 * 120.04683 * 180.02562 * 11 10 9 13 13 C 1.38446 * 120.33476 * 359.71339 * 12 11 10 14 14 C 1.38011 * 120.26494 * 0.56070 * 13 12 11 15 15 C 1.39307 * 119.94449 * 359.44681 * 14 13 12 16 16 C 1.48242 * 120.16076 * 180.29887 * 15 14 13 17 17 C 1.39352 * 120.14788 * 64.99500 * 16 15 14 18 18 C 1.38104 * 119.90995 * 180.02562 * 17 16 15 19 19 Cl 1.73594 * 119.88907 * 180.02562 * 18 17 16 20 20 C 1.38490 * 120.21429 * 0.02562 * 18 17 16 21 21 C 1.38203 * 120.30408 * 359.97438 * 20 18 17 22 22 C 1.38550 * 120.07955 * 359.72115 * 21 20 18 23 23 O 1.35874 * 120.10893 * 180.30207 * 22 21 20 24 24 H 0.96996 * 120.00298 * 359.97438 * 1 2 3 25 25 H 1.07993 * 119.97533 * 359.97438 * 11 10 9 26 26 H 1.08001 * 119.83285 * 179.97438 * 12 11 10 27 27 H 1.07996 * 119.86697 * 180.28669 * 13 12 11 28 28 H 1.08001 * 120.02358 * 179.71618 * 14 13 12 29 29 H 1.07993 * 120.04302 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.85018 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.95774 * 180.02562 * 21 20 18 32 32 H 0.96701 * 113.99839 * 270.27531 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3682 -0.0005 10 6 2.0697 -3.5037 0.1057 11 6 3.4557 -3.4403 0.0912 12 6 4.2021 -4.5975 0.1989 13 6 3.5745 -5.8249 0.3276 14 6 2.1967 -5.9040 0.3378 15 6 1.4328 -4.7441 0.2299 16 6 -0.0474 -4.8229 0.2470 17 6 -0.7118 -5.2606 1.3910 18 6 -2.0909 -5.3325 1.4014 19 17 -2.9181 -5.8772 2.8271 20 6 -2.8161 -4.9716 0.2781 21 6 -2.1663 -4.5363 -0.8613 22 6 -0.7834 -4.4533 -0.8832 23 8 -0.1442 -4.0195 -2.0010 24 1 -0.4850 0.8400 0.0004 25 1 3.9512 -2.4856 -0.0051 26 1 5.2807 -4.5442 0.1869 27 1 4.1656 -6.7244 0.4160 28 1 1.7113 -6.8639 0.4338 29 1 -0.1490 -5.5439 2.2681 30 1 -3.8944 -5.0306 0.2925 31 1 -2.7373 -4.2558 -1.7340 32 1 0.0822 -4.7244 -2.6231 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245051817.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:44 Heat of formation + Delta-G solvation = -44.300901 kcal Electronic energy + Delta-G solvation = -20235.780524 eV Core-core repulsion = 16959.339324 eV Total energy + Delta-G solvation = -3276.441200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.050 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23570 -40.06960 -38.05172 -38.00901 -36.88113 -34.27174 -33.51634 -30.93622 -30.65460 -29.44300 -27.29499 -24.57098 -23.60797 -22.98333 -22.02741 -19.76241 -19.41898 -18.75968 -17.55383 -16.98482 -16.56292 -16.34948 -16.07655 -15.77029 -15.36501 -15.19642 -14.88775 -14.44397 -14.19978 -14.09962 -13.52834 -13.40638 -13.24719 -12.97354 -12.55086 -12.41570 -12.35925 -12.15950 -12.03787 -11.95988 -11.49264 -11.07625 -10.77588 -10.09715 -9.63771 -9.32472 -8.85188 -8.42083 -6.08129 0.03241 0.19850 0.63340 0.81122 1.13063 1.33824 1.43278 1.50397 2.18144 2.52764 2.86915 3.20313 3.32269 3.54183 3.72644 3.88295 4.15819 4.22558 4.29297 4.43454 4.55494 4.66683 4.75433 4.88773 5.03989 5.10435 5.15102 5.16302 5.29515 5.46353 5.60367 5.72057 5.76746 5.79212 6.05128 6.25316 6.93154 7.01852 7.86079 8.79543 Molecular weight = 290.05amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.006292 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.146639 B = 4448.876309 C = 5561.460386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.018 4.018 3 Si 1.011 2.989 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.097 0.903 9 O -0.202 6.202 10 C 0.139 3.861 11 C -0.256 4.256 12 C -0.066 4.066 13 C -0.195 4.195 14 C -0.057 4.057 15 C -0.143 4.143 16 C -0.048 4.048 17 C -0.096 4.096 18 C -0.051 4.051 19 Cl -0.064 7.064 20 C -0.097 4.097 21 C -0.140 4.140 22 C 0.122 3.878 23 O -0.497 6.497 24 H 0.269 0.731 25 H 0.116 0.884 26 H 0.143 0.857 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 -12.596 -0.003 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.216 4.216 3 Si 0.831 3.169 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.114 0.886 9 O -0.107 6.107 10 C 0.087 3.913 11 C -0.275 4.275 12 C -0.084 4.084 13 C -0.213 4.213 14 C -0.075 4.075 15 C -0.144 4.144 16 C -0.049 4.049 17 C -0.114 4.114 18 C -0.077 4.077 19 Cl -0.035 7.035 20 C -0.115 4.115 21 C -0.159 4.159 22 C 0.077 3.923 23 O -0.309 6.309 24 H 0.078 0.922 25 H 0.133 0.867 26 H 0.161 0.839 27 H 0.170 0.830 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.961 -11.906 0.361 11.950 hybrid contribution 0.329 0.724 -0.182 0.816 sum -0.632 -11.182 0.179 11.201 Atomic orbital electron populations 1.70217 1.07818 1.28326 1.48378 1.26451 0.96733 1.02402 0.96056 0.84689 0.77894 0.75157 0.79120 1.18978 1.19765 1.17786 1.21774 0.92308 0.81893 1.53036 0.88584 1.83996 1.34991 1.11870 1.79811 1.19870 0.91060 0.87650 0.92721 1.21262 0.93133 1.00255 1.12836 1.21221 1.00219 0.91517 0.95396 1.21061 0.94055 0.98050 1.08149 1.21118 0.94007 0.95990 0.96413 1.17942 0.91230 0.91314 1.13914 1.19018 0.92832 0.99148 0.93890 1.21071 0.92602 1.00143 0.97614 1.20798 0.92190 1.04977 0.89747 1.98335 1.78325 1.88406 1.38454 1.21133 1.01324 0.98457 0.90613 1.21498 0.93054 1.01022 1.00291 1.18846 0.90729 0.95018 0.87679 1.84973 1.78516 1.36765 1.30613 0.92200 0.86654 0.83935 0.83042 0.83737 0.84397 0.82119 0.82946 0.74472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.49 13.67 21.61 0.30 -56.20 16 2 C -0.02 -1.04 5.49 84.83 0.47 -0.57 16 3 Si 1.01 43.72 29.55 68.60 2.03 45.75 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.41 -24.28 9.49 67.92 0.64 -23.64 16 8 H 0.10 5.22 5.21 -2.91 -0.02 5.21 16 9 O -0.20 -12.01 8.72 -21.77 -0.19 -12.20 16 10 C 0.14 6.85 6.33 22.82 0.14 6.99 16 11 C -0.26 -11.09 9.16 22.36 0.20 -10.89 16 12 C -0.07 -2.18 10.03 22.29 0.22 -1.96 16 13 C -0.19 -5.72 10.03 22.27 0.22 -5.50 16 14 C -0.06 -1.85 9.73 22.47 0.22 -1.63 16 15 C -0.14 -5.90 4.96 -19.94 -0.10 -5.99 16 16 C -0.05 -1.92 4.96 -19.96 -0.10 -2.01 16 17 C -0.10 -3.38 9.51 22.51 0.21 -3.17 16 18 C -0.05 -1.60 6.31 22.30 0.14 -1.46 16 19 Cl -0.06 -1.72 28.95 -2.72 -0.08 -1.80 16 20 C -0.10 -2.87 9.81 22.32 0.22 -2.66 16 21 C -0.14 -4.63 9.98 22.34 0.22 -4.41 16 22 C 0.12 4.80 6.39 22.73 0.15 4.95 16 23 O -0.50 -20.16 12.46 -92.13 -1.15 -21.31 16 24 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.12 5.16 5.64 -2.91 -0.02 5.14 16 26 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.40 11.24 9.06 -74.06 -0.67 10.57 16 Total: -1.00 -73.84 303.42 4.28 -69.56 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.51 Total: 28.14 kcal Atomic # 6 Polarization: -54.82 SS G_CDS: 2.87 Total: -51.95 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.30 Total: -56.20 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.34 Total: -33.50 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -73.84 4.28 -69.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245051817.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.256 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds