Wall clock time and date at job start Tue Mar 31 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00059 * 2 1 4 4 H 1.48504 * 109.47255 * 270.00034 * 3 2 1 5 5 H 1.48500 * 109.47028 * 29.99993 * 3 2 1 6 6 H 1.48506 * 109.47277 * 149.99901 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99705 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00207 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47274 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.93900 * 270.27121 * 10 9 7 12 12 C 1.38303 * 120.24475 * 180.27713 * 11 10 9 13 13 C 1.38039 * 120.12211 * 359.44585 * 12 11 10 14 14 C 1.39327 * 119.87549 * 0.27921 * 13 12 11 15 15 C 1.48378 * 120.12227 * 180.02562 * 14 13 12 16 16 C 1.39318 * 120.11985 * 129.72685 * 15 14 13 17 17 C 1.38216 * 119.86832 * 179.71996 * 16 15 14 18 18 F 1.35098 * 119.95352 * 180.29263 * 17 16 15 19 19 C 1.38564 * 120.09487 * 0.55342 * 17 16 15 20 20 C 1.38251 * 120.23042 * 359.71889 * 19 17 16 21 21 C 1.38158 * 120.13511 * 0.02562 * 20 19 17 22 22 Cl 1.73603 * 120.04782 * 180.02562 * 21 20 19 23 23 C 1.38000 * 119.94042 * 89.99883 * 10 9 7 24 24 H 0.96997 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47265 * 59.99724 * 9 7 2 26 26 H 1.09005 * 109.46914 * 299.99924 * 9 7 2 27 27 H 1.07998 * 119.87779 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.94275 * 179.72764 * 12 11 10 29 29 H 1.07995 * 120.06762 * 180.29810 * 13 12 11 30 30 H 1.08002 * 120.06312 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.88486 * 179.69818 * 19 17 16 32 32 H 1.08004 * 119.93048 * 179.97438 * 20 19 17 33 33 H 1.08003 * 120.05783 * 359.97404 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0023 11 6 4.2383 -3.2669 1.2016 12 6 4.7047 -4.5689 1.2100 13 6 4.9381 -5.2288 0.0203 14 6 4.7085 -4.5789 -1.1905 15 6 4.9570 -5.2834 -2.4725 16 6 3.9785 -5.2963 -3.4642 17 6 4.2178 -5.9491 -4.6587 18 9 3.2724 -5.9578 -5.6238 19 6 5.4237 -6.5994 -4.8658 20 6 6.3953 -6.5939 -3.8823 21 6 6.1683 -5.9399 -2.6867 22 17 7.3902 -5.9338 -1.4535 23 6 4.2440 -3.2650 -1.1930 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8753 -0.6804 -0.8889 27 1 4.0523 -2.7559 2.1347 28 1 4.8823 -5.0717 2.1492 29 1 5.2977 -6.2471 0.0280 30 1 3.0365 -4.7937 -3.3014 31 1 5.6051 -7.1126 -5.7985 32 1 7.3334 -7.1027 -4.0486 33 1 4.0639 -2.7566 -2.1288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245131565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:52 Heat of formation + Delta-G solvation = -13.698704 kcal Electronic energy + Delta-G solvation = -19323.127250 eV Core-core repulsion = 16060.385851 eV Total energy + Delta-G solvation = -3262.741399 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.04012 -39.75489 -38.21503 -36.48275 -33.72034 -32.52172 -31.41700 -30.48752 -28.99467 -27.55817 -23.79584 -23.31515 -22.51643 -21.32562 -20.02593 -17.57168 -16.81585 -16.70436 -16.65578 -15.96956 -15.75740 -14.87530 -14.67773 -14.27211 -14.04095 -13.69232 -13.28949 -13.24715 -12.90054 -12.63806 -12.35781 -11.98132 -11.74506 -11.64003 -11.56088 -11.24889 -10.90664 -10.66016 -10.40305 -10.10188 -10.00003 -9.50541 -9.34222 -8.78905 -8.61814 -8.20478 -7.86354 -6.10956 -4.10597 0.67385 0.86678 1.87376 1.98045 2.01777 3.26139 3.26210 3.34350 3.36628 3.99057 4.27746 4.38326 4.41063 4.62221 4.80698 5.02184 5.20871 5.36454 5.37548 5.47904 5.57177 5.72630 5.79825 5.85850 5.93230 5.97569 6.16792 6.37559 6.53942 6.56238 6.85663 6.89657 6.96976 6.99201 7.48493 7.50219 7.66093 8.45139 8.93877 9.49132 11.01881 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.004612 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.704073 B = 6070.251924 C = 7155.990567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.031 4.031 11 C -0.107 4.107 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.074 4.074 15 C 0.013 3.987 16 C -0.132 4.132 17 C 0.107 3.893 18 F -0.135 7.135 19 C -0.151 4.151 20 C -0.082 4.082 21 C -0.044 4.044 22 Cl -0.055 7.055 23 C -0.095 4.095 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.024 0.976 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 -13.637 -6.126 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.031 4.031 11 C -0.125 4.125 12 C -0.142 4.142 13 C -0.130 4.130 14 C -0.074 4.074 15 C 0.012 3.988 16 C -0.151 4.151 17 C 0.088 3.912 18 F -0.113 7.113 19 C -0.170 4.170 20 C -0.101 4.101 21 C -0.071 4.071 22 Cl -0.026 7.026 23 C -0.113 4.113 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.968 -13.515 -6.050 20.356 hybrid contribution 0.150 0.881 -0.127 0.903 sum 14.119 -12.633 -6.177 19.927 Atomic orbital electron populations 1.69897 1.06261 1.27030 1.50512 1.24991 0.94726 0.99011 0.94424 0.86820 0.80415 0.83696 0.78685 1.20138 1.21205 1.18907 1.20919 0.88168 0.94690 1.51481 0.90785 1.18822 0.97529 0.88479 0.97480 1.20202 0.93000 0.98049 0.91893 1.21190 0.98502 0.94507 0.98315 1.20953 1.00782 0.95152 0.97316 1.20930 1.01182 0.99385 0.91501 1.18445 1.03838 0.94464 0.90619 1.18553 0.91216 0.95093 0.93962 1.21342 1.01104 1.01031 0.91638 1.17639 0.87116 0.99865 0.86588 1.91528 1.63318 1.94816 1.61644 1.21065 0.92579 1.02381 1.00992 1.20786 0.99755 0.98467 0.91069 1.21017 0.91259 1.02844 0.91935 1.98374 1.53417 1.97371 1.53461 1.21058 0.98632 0.93020 0.98614 0.92555 0.95271 0.95800 0.86113 0.86521 0.86678 0.83149 0.83975 0.83981 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.51 -14.32 9.65 -34.44 -0.33 -14.65 16 8 H 0.07 2.26 7.98 -52.48 -0.42 1.84 16 9 C 0.01 0.33 4.17 -29.04 -0.12 0.21 16 10 C -0.03 -0.64 5.06 -104.67 -0.53 -1.17 16 11 C -0.11 -1.95 9.69 -39.52 -0.38 -2.34 16 12 C -0.12 -1.94 10.03 -39.63 -0.40 -2.33 16 13 C -0.11 -1.70 8.18 -39.25 -0.32 -2.03 16 14 C -0.07 -1.19 5.11 -104.90 -0.54 -1.72 16 15 C 0.01 0.18 5.48 -104.88 -0.57 -0.40 16 16 C -0.13 -1.79 9.49 -39.19 -0.37 -2.17 16 17 C 0.11 1.30 7.29 -39.47 -0.29 1.02 16 18 F -0.13 -1.72 17.26 2.25 0.04 -1.69 16 19 C -0.15 -1.49 10.02 -39.46 -0.40 -1.88 16 20 C -0.08 -0.80 9.82 -39.61 -0.39 -1.19 16 21 C -0.04 -0.53 6.28 -39.17 -0.25 -0.78 16 22 Cl -0.06 -0.65 25.98 -51.86 -1.35 -2.00 16 23 C -0.10 -1.76 9.17 -39.25 -0.36 -2.12 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 26 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 27 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.12 1.54 7.15 -52.49 -0.38 1.16 16 30 H 0.15 2.10 8.05 -52.49 -0.42 1.68 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 2.19 8.05 -52.48 -0.42 1.77 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -29.84 306.75 -9.18 -39.02 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -3.26 Total: -0.28 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: -5.34 Total: -29.66 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.35 Total: -2.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.84 -9.18 -39.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245131565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.318 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds