Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00059 * 2 1 4 4 H 1.48504 * 109.47255 * 270.00034 * 3 2 1 5 5 H 1.48500 * 109.47028 * 29.99993 * 3 2 1 6 6 H 1.48506 * 109.47277 * 149.99901 * 3 2 1 7 7 C 1.37878 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99705 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00207 * 180.02562 * 7 2 1 10 10 C 1.50697 * 109.47274 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.93900 * 270.27121 * 10 9 7 12 12 C 1.38303 * 120.24475 * 180.27713 * 11 10 9 13 13 C 1.38039 * 120.12211 * 359.44585 * 12 11 10 14 14 C 1.39327 * 119.87549 * 0.27921 * 13 12 11 15 15 C 1.48378 * 120.12227 * 180.02562 * 14 13 12 16 16 C 1.39318 * 120.11985 * 129.72685 * 15 14 13 17 17 C 1.38216 * 119.86832 * 179.71996 * 16 15 14 18 18 F 1.35098 * 119.95352 * 180.29263 * 17 16 15 19 19 C 1.38564 * 120.09487 * 0.55342 * 17 16 15 20 20 C 1.38251 * 120.23042 * 359.71889 * 19 17 16 21 21 C 1.38158 * 120.13511 * 0.02562 * 20 19 17 22 22 Cl 1.73603 * 120.04782 * 180.02562 * 21 20 19 23 23 C 1.38000 * 119.94042 * 89.99883 * 10 9 7 24 24 H 0.96997 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47265 * 59.99724 * 9 7 2 26 26 H 1.09005 * 109.46914 * 299.99924 * 9 7 2 27 27 H 1.07998 * 119.87779 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.94275 * 179.72764 * 12 11 10 29 29 H 1.07995 * 120.06762 * 180.29810 * 13 12 11 30 30 H 1.08002 * 120.06312 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.88486 * 179.69818 * 19 17 16 32 32 H 1.08004 * 119.93048 * 179.97438 * 20 19 17 33 33 H 1.08003 * 120.05783 * 359.97404 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0139 -2.6149 0.0023 11 6 4.2383 -3.2669 1.2016 12 6 4.7047 -4.5689 1.2100 13 6 4.9381 -5.2288 0.0203 14 6 4.7085 -4.5789 -1.1905 15 6 4.9570 -5.2834 -2.4725 16 6 3.9785 -5.2963 -3.4642 17 6 4.2178 -5.9491 -4.6587 18 9 3.2724 -5.9578 -5.6238 19 6 5.4237 -6.5994 -4.8658 20 6 6.3953 -6.5939 -3.8823 21 6 6.1683 -5.9399 -2.6867 22 17 7.3902 -5.9338 -1.4535 23 6 4.2440 -3.2650 -1.1930 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8753 -0.6804 -0.8889 27 1 4.0523 -2.7559 2.1347 28 1 4.8823 -5.0717 2.1492 29 1 5.2977 -6.2471 0.0280 30 1 3.0365 -4.7937 -3.3014 31 1 5.6051 -7.1126 -5.7985 32 1 7.3334 -7.1027 -4.0486 33 1 4.0639 -2.7566 -2.1288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245131565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = -27.798841 kcal Electronic energy + Delta-G solvation = -19323.738678 eV Core-core repulsion = 16060.385851 eV Total energy + Delta-G solvation = -3263.352827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.057 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01504 -40.86944 -39.41149 -37.40653 -35.52445 -33.94779 -33.01620 -31.46272 -30.23176 -29.24837 -24.99785 -24.87228 -23.67962 -22.59281 -21.42311 -18.98757 -18.62942 -17.65053 -17.63129 -17.24899 -16.73914 -16.42426 -16.04612 -15.87850 -15.11466 -14.76273 -14.67203 -14.42558 -14.25361 -14.06278 -13.64824 -13.52665 -13.35526 -13.05142 -12.62826 -12.50146 -12.25808 -12.05308 -11.94362 -11.75528 -11.66210 -11.41318 -10.80475 -10.44037 -9.79319 -9.53390 -9.19825 -8.31475 -6.36721 -0.32779 -0.06631 0.59382 0.63651 1.07848 1.35407 1.36789 1.48752 2.31700 2.33816 2.89952 3.02791 3.08670 3.43512 3.66470 3.93928 4.05571 4.12552 4.15810 4.30930 4.40284 4.61692 4.68402 4.69784 4.87128 4.95856 5.00617 5.02287 5.05439 5.20375 5.27497 5.54378 5.56802 5.59214 5.65338 5.94980 6.11199 6.26319 6.69466 7.26924 8.85063 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.016685 B = 0.004612 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.704073 B = 6070.251924 C = 7155.990567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.520 4.520 8 H 0.028 0.972 9 C 0.020 3.980 10 C -0.064 4.064 11 C -0.123 4.123 12 C -0.115 4.115 13 C -0.106 4.106 14 C -0.067 4.067 15 C -0.010 4.010 16 C -0.147 4.147 17 C 0.096 3.904 18 F -0.142 7.142 19 C -0.131 4.131 20 C -0.069 4.069 21 C -0.045 4.045 22 Cl -0.051 7.051 23 C -0.112 4.112 24 H 0.268 0.732 25 H 0.034 0.966 26 H 0.027 0.973 27 H 0.122 0.878 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.099 -15.047 -6.750 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.168 1.168 7 C -0.558 4.558 8 H 0.046 0.954 9 C -0.017 4.017 10 C -0.064 4.064 11 C -0.141 4.141 12 C -0.133 4.133 13 C -0.124 4.124 14 C -0.067 4.067 15 C -0.011 4.011 16 C -0.167 4.167 17 C 0.077 3.923 18 F -0.120 7.120 19 C -0.149 4.149 20 C -0.087 4.087 21 C -0.072 4.072 22 Cl -0.022 7.022 23 C -0.130 4.130 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.195 0.805 32 H 0.196 0.804 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 17.024 -14.940 -6.672 23.612 hybrid contribution -0.797 1.134 0.003 1.386 sum 16.227 -13.807 -6.668 22.325 Atomic orbital electron populations 1.70057 1.08298 1.28277 1.52260 1.25963 0.95575 1.03319 0.93935 0.85677 0.79602 0.78234 0.79311 1.19167 1.20723 1.16814 1.21148 0.90748 0.93005 1.50862 0.95377 1.18659 0.94354 0.91109 0.97546 1.20075 0.95572 0.97116 0.93624 1.21303 0.99410 0.95877 0.97534 1.21296 0.98987 0.93961 0.99038 1.21271 0.99963 1.00249 0.90936 1.18633 1.02238 0.93461 0.92364 1.18436 0.92600 0.96753 0.93294 1.21245 1.00704 1.01972 0.92738 1.17799 0.88063 1.00498 0.85972 1.91512 1.63853 1.94929 1.61719 1.21454 0.90876 1.00490 1.02115 1.21190 1.00878 0.97115 0.89563 1.21142 0.90501 1.02618 0.92952 1.98377 1.52951 1.97344 1.53527 1.21042 0.99938 0.94393 0.97662 0.92343 0.94813 0.95503 0.85957 0.83067 0.84172 0.85086 0.80478 0.80376 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 2 C 0.01 0.54 5.47 84.65 0.46 1.00 16 3 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.24 -10.50 6.54 99.48 0.65 -9.85 16 7 C -0.52 -30.32 9.65 25.60 0.25 -30.07 16 8 H 0.03 1.83 7.98 -2.91 -0.02 1.81 16 9 C 0.02 0.98 4.17 29.10 0.12 1.10 16 10 C -0.06 -2.69 5.06 -19.90 -0.10 -2.79 16 11 C -0.12 -4.52 9.69 22.31 0.22 -4.30 16 12 C -0.12 -3.41 10.03 22.24 0.22 -3.19 16 13 C -0.11 -3.07 8.18 22.48 0.18 -2.88 16 14 C -0.07 -2.15 5.11 -20.04 -0.10 -2.25 16 15 C -0.01 -0.27 5.48 -20.03 -0.11 -0.38 16 16 C -0.15 -4.05 9.49 22.52 0.21 -3.83 16 17 C 0.10 2.21 7.29 22.34 0.16 2.37 16 18 F -0.14 -3.53 17.26 44.97 0.78 -2.75 16 19 C -0.13 -2.10 10.02 22.35 0.22 -1.87 16 20 C -0.07 -1.08 9.82 22.25 0.22 -0.86 16 21 C -0.05 -0.98 6.28 22.54 0.14 -0.84 16 22 Cl -0.05 -1.06 25.98 -2.72 -0.07 -1.13 16 23 C -0.11 -4.32 9.17 22.48 0.21 -4.11 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.03 1.56 7.14 -2.39 -0.02 1.55 16 26 H 0.03 1.25 7.51 -2.38 -0.02 1.23 16 27 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 29 H 0.14 3.33 7.15 -2.91 -0.02 3.31 16 30 H 0.13 3.98 8.05 -2.91 -0.02 3.95 16 31 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.11 4.32 8.05 -2.91 -0.02 4.30 16 Total: -1.00 -67.88 306.75 6.27 -61.61 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.07 Total: 8.70 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 2.31 Total: -52.90 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.30 Total: -59.47 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.75 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -67.88 6.27 -61.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245131565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.809 kcal (2) G-P(sol) polarization free energy of solvation -67.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds