Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86796 * 120.00137 * 2 1 4 4 H 1.48503 * 109.47175 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47100 * 120.00156 * 3 2 1 6 6 H 1.48498 * 109.47202 * 240.00023 * 3 2 1 7 7 C 1.38641 * 119.99639 * 179.72628 * 2 1 3 8 8 H 1.08000 * 119.99615 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.35731 * 116.99607 * 185.34588 * 9 7 2 11 11 C 1.39454 * 120.37970 * 5.70295 * 10 9 7 12 12 C 1.38187 * 118.45969 * 179.76174 * 11 10 9 13 13 C 1.39495 * 119.14413 * 0.53855 * 12 11 10 14 14 C 1.48176 * 119.65824 * 179.72371 * 13 12 11 15 15 C 1.39498 * 120.05536 * 311.66621 * 14 13 12 16 16 C 1.37788 * 119.95768 * 179.97438 * 15 14 13 17 17 C 1.39093 * 120.07981 * 359.97438 * 16 15 14 18 18 N 1.39491 * 119.94293 * 180.02562 * 17 16 15 19 19 C 1.39004 * 120.11959 * 0.02562 * 17 16 15 20 20 C 1.37963 * 120.03508 * 359.74237 * 19 17 16 21 21 Cl 1.73599 * 120.03912 * 180.25743 * 20 19 17 22 22 N 1.32732 * 120.67978 * 359.70427 * 13 12 11 23 23 C 1.31691 * 121.67702 * 0.02562 * 22 13 12 24 24 H 0.96997 * 120.00166 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.76994 * 0.02562 * 11 10 9 26 26 H 1.07996 * 120.42457 * 180.26316 * 12 11 10 27 27 H 1.07998 * 120.02232 * 0.02562 * 15 14 13 28 28 H 1.07999 * 119.96251 * 180.02562 * 16 15 14 29 29 H 0.96997 * 119.99427 * 359.97438 * 18 17 16 30 30 H 0.96997 * 120.00035 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.97921 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.60192 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 1.2847 2.7464 0.0006 5 1 3.1035 1.6963 1.2125 6 1 3.1034 1.6963 -1.2125 7 6 2.0088 -1.2007 0.0057 8 1 3.0888 -1.2007 0.0053 9 8 1.3347 -2.3681 0.0108 10 6 2.0693 -3.5033 0.1289 11 6 3.4433 -3.4336 0.3573 12 6 4.1518 -4.6141 0.4761 13 6 3.4753 -5.8278 0.3530 14 6 4.2249 -7.1004 0.4722 15 6 5.4088 -7.2835 -0.2424 16 6 6.1045 -8.4675 -0.1296 17 6 5.6280 -9.4801 0.6963 18 7 6.3348 -10.6774 0.8088 19 6 4.4486 -9.3012 1.4099 20 6 3.7506 -8.1158 1.3043 21 17 2.2812 -7.8897 2.2005 22 7 2.1670 -5.8544 0.1305 23 6 1.4621 -4.7478 0.0176 24 1 -0.4850 -0.8400 -0.0004 25 1 3.9413 -2.4793 0.4437 26 1 5.2163 -4.5971 0.6574 27 1 5.7804 -6.4974 -0.8830 28 1 7.0214 -8.6091 -0.6825 29 1 7.1577 -10.8033 0.3109 30 1 6.0034 -11.3839 1.3848 31 1 4.0808 -10.0888 2.0508 32 1 0.3992 -4.8085 -0.1638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245507330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = 17.036137 kcal Electronic energy + Delta-G solvation = -19288.820315 eV Core-core repulsion = 16047.331640 eV Total energy + Delta-G solvation = -3241.488675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89700 -39.06698 -37.27337 -36.21414 -34.51969 -32.48541 -31.43952 -30.65514 -30.35942 -27.38872 -25.10882 -23.23071 -22.80222 -22.19497 -20.97772 -18.55757 -17.55757 -17.12241 -16.95308 -16.15167 -15.75581 -14.56700 -14.49927 -14.16095 -13.98542 -13.86380 -13.68669 -13.61087 -13.52964 -12.60521 -12.56253 -12.23383 -11.79701 -11.34793 -11.29571 -10.96997 -10.69238 -10.51661 -10.37221 -10.32988 -9.87976 -9.03527 -8.87711 -8.76193 -8.70419 -7.91119 -7.14643 -6.91592 -4.18776 1.25089 1.33452 2.01448 2.24747 2.43767 3.17833 3.22456 3.39081 3.69734 3.75280 4.00847 4.52601 4.74828 4.87066 4.99493 5.06733 5.09308 5.35291 5.48176 5.56012 5.77008 5.78910 5.86649 5.98184 6.12246 6.29522 6.50798 6.56461 6.62058 6.88928 6.98735 7.26512 7.33152 7.42759 7.52838 8.23830 8.71464 8.78891 9.41711 10.52385 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.003575 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.489552 B = 7830.112519 C = 8447.865743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.013 3.987 3 Si 1.096 2.904 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.472 4.472 8 H 0.085 0.915 9 O -0.188 6.188 10 C 0.110 3.890 11 C -0.198 4.198 12 C -0.099 4.099 13 C 0.050 3.950 14 C -0.054 4.054 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.218 3.782 18 N -0.877 5.877 19 C -0.195 4.195 20 C 0.033 3.967 21 Cl -0.055 7.055 22 N -0.417 5.417 23 C 0.029 3.971 24 H 0.285 0.715 25 H 0.138 0.862 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.124 0.876 29 H 0.398 0.602 30 H 0.397 0.603 31 H 0.128 0.872 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 -16.260 1.595 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.194 4.194 3 Si 0.919 3.081 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.547 4.547 8 H 0.103 0.897 9 O -0.089 6.089 10 C 0.054 3.946 11 C -0.224 4.224 12 C -0.119 4.119 13 C -0.086 4.086 14 C -0.057 4.057 15 C -0.071 4.071 16 C -0.217 4.217 17 C 0.114 3.886 18 N -0.417 5.417 19 C -0.218 4.218 20 C 0.005 3.995 21 Cl -0.025 7.025 22 N -0.126 5.126 23 C -0.134 4.134 24 H 0.095 0.905 25 H 0.155 0.845 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.226 0.774 30 H 0.225 0.775 31 H 0.146 0.854 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.416 -15.230 1.577 19.098 hybrid contribution 0.869 -1.199 0.243 1.500 sum 12.285 -16.428 1.820 20.594 Atomic orbital electron populations 1.70577 1.06605 1.31943 1.41056 1.26624 0.96791 1.01234 0.94723 0.83107 0.74562 0.73189 0.77232 1.19625 1.20592 1.20564 1.22262 0.93212 0.82121 1.57152 0.89736 1.83671 1.35350 1.12235 1.77679 1.20422 0.91172 0.88653 0.94375 1.21455 0.94267 0.98953 1.07719 1.21658 0.99682 0.91930 0.98668 1.18890 0.89904 0.90833 1.08932 1.18112 0.95630 0.92875 0.99088 1.20905 0.92912 0.96600 0.96714 1.20507 1.02735 0.94189 1.04316 1.17563 0.90738 0.86766 0.93563 1.42355 1.29023 1.15842 1.54455 1.20266 0.96979 0.98109 1.06486 1.20670 0.89065 0.94302 0.95444 1.98375 1.34080 1.97040 1.73033 1.67532 1.06618 1.29835 1.08613 1.21720 0.99798 0.85101 1.06768 0.90527 0.84489 0.86268 0.85151 0.85818 0.77379 0.77474 0.85445 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.29 13.70 55.48 0.76 -24.53 16 2 C 0.01 0.35 5.49 -17.52 -0.10 0.26 16 3 Si 1.10 22.86 29.92 -169.99 -5.09 17.77 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.47 -12.82 9.45 30.88 0.29 -12.53 16 8 H 0.09 2.14 5.34 -52.49 -0.28 1.86 16 9 O -0.19 -5.12 9.17 0.17 0.00 -5.12 16 10 C 0.11 2.63 6.67 -38.88 -0.26 2.37 16 11 C -0.20 -4.24 9.22 -39.15 -0.36 -4.61 16 12 C -0.10 -1.85 9.48 -39.13 -0.37 -2.23 16 13 C 0.05 0.95 5.84 -82.93 -0.48 0.46 16 14 C -0.05 -0.87 5.61 -104.85 -0.59 -1.46 16 15 C -0.05 -0.69 9.44 -39.28 -0.37 -1.06 16 16 C -0.19 -2.15 9.87 -39.43 -0.39 -2.54 16 17 C 0.22 2.35 6.75 -83.77 -0.57 1.78 16 18 N -0.88 -6.10 9.08 32.43 0.29 -5.80 16 19 C -0.19 -2.43 9.66 -39.40 -0.38 -2.81 16 20 C 0.03 0.51 6.32 -39.18 -0.25 0.27 16 21 Cl -0.05 -0.89 26.96 -51.86 -1.40 -2.29 16 22 N -0.42 -8.64 8.83 -9.62 -0.09 -8.72 16 23 C 0.03 0.64 11.14 -17.36 -0.19 0.45 16 24 H 0.28 8.43 7.97 -40.82 -0.33 8.11 16 25 H 0.14 2.89 5.83 -52.49 -0.31 2.58 16 26 H 0.12 1.85 8.00 -52.49 -0.42 1.43 16 27 H 0.13 1.56 7.99 -52.49 -0.42 1.14 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.40 1.97 8.84 -40.82 -0.36 1.61 16 30 H 0.40 2.11 8.84 -40.82 -0.36 1.75 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.15 3.03 8.06 -52.49 -0.42 2.61 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -31.08 300.89 -7.53 -38.61 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.54 Total: 7.20 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -4.02 Total: -21.64 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.97 Total: -39.06 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.09 Total: 17.77 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.40 Total: -2.29 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.08 -7.53 -38.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245507330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.642 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds