Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31569 * 1 3 3 Si 1.86796 * 120.00137 * 2 1 4 4 H 1.48503 * 109.47175 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47100 * 120.00156 * 3 2 1 6 6 H 1.48498 * 109.47202 * 240.00023 * 3 2 1 7 7 C 1.38641 * 119.99639 * 179.72628 * 2 1 3 8 8 H 1.08000 * 119.99615 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.35731 * 116.99607 * 185.34588 * 9 7 2 11 11 C 1.39454 * 120.37970 * 5.70295 * 10 9 7 12 12 C 1.38187 * 118.45969 * 179.76174 * 11 10 9 13 13 C 1.39495 * 119.14413 * 0.53855 * 12 11 10 14 14 C 1.48176 * 119.65824 * 179.72371 * 13 12 11 15 15 C 1.39498 * 120.05536 * 311.66621 * 14 13 12 16 16 C 1.37788 * 119.95768 * 179.97438 * 15 14 13 17 17 C 1.39093 * 120.07981 * 359.97438 * 16 15 14 18 18 N 1.39491 * 119.94293 * 180.02562 * 17 16 15 19 19 C 1.39004 * 120.11959 * 0.02562 * 17 16 15 20 20 C 1.37963 * 120.03508 * 359.74237 * 19 17 16 21 21 Cl 1.73599 * 120.03912 * 180.25743 * 20 19 17 22 22 N 1.32732 * 120.67978 * 359.70427 * 13 12 11 23 23 C 1.31691 * 121.67702 * 0.02562 * 22 13 12 24 24 H 0.96997 * 120.00166 * 179.97438 * 1 2 3 25 25 H 1.07996 * 120.76994 * 0.02562 * 11 10 9 26 26 H 1.07996 * 120.42457 * 180.26316 * 12 11 10 27 27 H 1.07998 * 120.02232 * 0.02562 * 15 14 13 28 28 H 1.07999 * 119.96251 * 180.02562 * 16 15 14 29 29 H 0.96997 * 119.99427 * 359.97438 * 18 17 16 30 30 H 0.96997 * 120.00035 * 179.97438 * 18 17 16 31 31 H 1.08000 * 119.97921 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.60192 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 1.2847 2.7464 0.0006 5 1 3.1035 1.6963 1.2125 6 1 3.1034 1.6963 -1.2125 7 6 2.0088 -1.2007 0.0057 8 1 3.0888 -1.2007 0.0053 9 8 1.3347 -2.3681 0.0108 10 6 2.0693 -3.5033 0.1289 11 6 3.4433 -3.4336 0.3573 12 6 4.1518 -4.6141 0.4761 13 6 3.4753 -5.8278 0.3530 14 6 4.2249 -7.1004 0.4722 15 6 5.4088 -7.2835 -0.2424 16 6 6.1045 -8.4675 -0.1296 17 6 5.6280 -9.4801 0.6963 18 7 6.3348 -10.6774 0.8088 19 6 4.4486 -9.3012 1.4099 20 6 3.7506 -8.1158 1.3043 21 17 2.2812 -7.8897 2.2005 22 7 2.1670 -5.8544 0.1305 23 6 1.4621 -4.7478 0.0176 24 1 -0.4850 -0.8400 -0.0004 25 1 3.9413 -2.4793 0.4437 26 1 5.2163 -4.5971 0.6574 27 1 5.7804 -6.4974 -0.8830 28 1 7.0214 -8.6091 -0.6825 29 1 7.1577 -10.8033 0.3109 30 1 6.0034 -11.3839 1.3848 31 1 4.0808 -10.0888 2.0508 32 1 0.3992 -4.8085 -0.1638 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245507330.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -3.305407 kcal Electronic energy + Delta-G solvation = -19289.702391 eV Core-core repulsion = 16047.331640 eV Total energy + Delta-G solvation = -3242.370751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.45283 -40.29729 -38.96336 -37.38987 -35.51117 -34.39647 -33.06311 -31.78538 -31.63404 -28.72254 -26.96281 -24.64351 -24.22189 -23.45012 -22.30602 -20.39743 -18.99290 -18.28947 -17.94326 -17.52774 -17.40328 -16.08013 -15.79771 -15.62357 -15.52007 -15.21713 -15.18884 -14.68847 -14.66682 -14.28308 -13.91014 -13.82993 -12.88567 -12.78741 -12.57701 -12.46918 -12.25192 -11.94446 -11.85099 -11.70216 -11.38278 -10.85094 -10.56937 -10.38340 -9.75550 -9.40178 -8.98467 -8.31887 -6.28161 0.00549 0.33128 0.35569 0.76979 1.29675 1.50457 1.62605 1.79866 2.33006 2.66832 2.87100 2.98948 3.11175 3.14576 3.51240 3.83110 3.93116 4.04042 4.20578 4.24494 4.46378 4.52176 4.56402 4.82758 4.88041 5.00806 5.15256 5.23516 5.29949 5.43071 5.55125 5.69641 5.78062 6.16111 6.52981 6.79118 7.00675 7.08402 7.51880 8.46229 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.032158 B = 0.003575 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.489552 B = 7830.112519 C = 8447.865743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.040 4.040 3 Si 1.145 2.855 4 H -0.275 1.275 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.489 4.489 8 H 0.096 0.904 9 O -0.235 6.235 10 C 0.079 3.921 11 C -0.193 4.193 12 C -0.097 4.097 13 C 0.077 3.923 14 C -0.100 4.100 15 C -0.045 4.045 16 C -0.190 4.190 17 C 0.236 3.764 18 N -0.857 5.857 19 C -0.203 4.203 20 C 0.022 3.978 21 Cl -0.077 7.077 22 N -0.429 5.429 23 C 0.023 3.977 24 H 0.263 0.737 25 H 0.140 0.860 26 H 0.161 0.839 27 H 0.144 0.856 28 H 0.159 0.841 29 H 0.413 0.587 30 H 0.409 0.591 31 H 0.144 0.856 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.778 -18.849 1.502 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.237 4.237 3 Si 0.960 3.040 4 H -0.200 1.200 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.565 4.565 8 H 0.114 0.886 9 O -0.141 6.141 10 C 0.026 3.974 11 C -0.220 4.220 12 C -0.117 4.117 13 C -0.060 4.060 14 C -0.103 4.103 15 C -0.065 4.065 16 C -0.213 4.213 17 C 0.128 3.872 18 N -0.396 5.396 19 C -0.226 4.226 20 C -0.006 4.006 21 Cl -0.048 7.048 22 N -0.138 5.138 23 C -0.138 4.138 24 H 0.071 0.929 25 H 0.158 0.842 26 H 0.178 0.822 27 H 0.162 0.838 28 H 0.177 0.823 29 H 0.244 0.756 30 H 0.238 0.762 31 H 0.162 0.838 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.758 -17.923 1.483 23.911 hybrid contribution -0.143 -1.015 0.295 1.067 sum 15.615 -18.938 1.778 24.609 Atomic orbital electron populations 1.70709 1.07860 1.30362 1.45637 1.28421 0.96823 1.04906 0.93539 0.82596 0.73808 0.68702 0.78921 1.20019 1.18311 1.18214 1.22636 0.93884 0.82654 1.57330 0.88644 1.83665 1.36399 1.12976 1.81017 1.20819 0.92419 0.88411 0.95796 1.21674 0.93430 1.00317 1.06551 1.22052 1.01580 0.90558 0.97484 1.19615 0.89347 0.92766 1.04241 1.18108 0.97503 0.92204 1.02528 1.21077 0.91562 0.97937 0.95928 1.20846 1.03450 0.93045 1.03938 1.17680 0.89846 0.87728 0.91908 1.42390 1.28851 1.14619 1.53782 1.20433 0.97512 0.97487 1.07185 1.20831 0.88700 0.95321 0.95765 1.98369 1.35627 1.97185 1.73642 1.67667 1.07816 1.28934 1.09334 1.21847 1.00289 0.85086 1.06567 0.92890 0.84227 0.82182 0.83806 0.82343 0.75643 0.76151 0.83843 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.70 21.61 0.30 -55.85 16 2 C -0.04 -2.22 5.49 84.83 0.47 -1.75 16 3 Si 1.14 46.58 29.92 68.60 2.05 48.63 16 4 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.49 -27.75 9.45 67.92 0.64 -27.11 16 8 H 0.10 4.95 5.34 -2.91 -0.02 4.94 16 9 O -0.24 -13.66 9.17 -22.32 -0.20 -13.86 16 10 C 0.08 3.89 6.67 22.73 0.15 4.05 16 11 C -0.19 -8.29 9.22 22.55 0.21 -8.08 16 12 C -0.10 -3.45 9.48 22.56 0.21 -3.24 16 13 C 0.08 2.85 5.84 41.95 0.25 3.09 16 14 C -0.10 -2.99 5.61 -20.01 -0.11 -3.11 16 15 C -0.05 -1.02 9.44 22.47 0.21 -0.81 16 16 C -0.19 -3.19 9.87 22.37 0.22 -2.97 16 17 C 0.24 3.93 6.75 38.31 0.26 4.18 16 18 N -0.86 -7.25 9.08 -51.32 -0.47 -7.72 16 19 C -0.20 -4.36 9.66 22.39 0.22 -4.14 16 20 C 0.02 0.63 6.32 22.53 0.14 0.77 16 21 Cl -0.08 -2.49 26.96 -2.72 -0.07 -2.56 16 22 N -0.43 -17.85 8.83 -184.36 -1.63 -19.48 16 23 C 0.02 1.03 11.14 84.88 0.95 1.98 16 24 H 0.26 16.85 7.97 -92.71 -0.74 16.11 16 25 H 0.14 5.85 5.83 -2.91 -0.02 5.84 16 26 H 0.16 4.35 8.00 -2.91 -0.02 4.32 16 27 H 0.14 2.79 7.99 -2.91 -0.02 2.77 16 28 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.41 1.64 8.84 -92.71 -0.82 0.82 16 30 H 0.41 2.24 8.84 -92.71 -0.82 1.42 16 31 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.15 6.54 8.06 -2.91 -0.02 6.52 16 Total: -1.00 -72.55 300.89 3.38 -69.17 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.41 Total: 18.79 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.81 Total: -37.13 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.80 Total: -83.04 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.20 Total: -13.86 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.05 Total: 48.63 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.07 Total: -2.56 kcal Total: -72.55 3.38 -69.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245507330.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.867 kcal (2) G-P(sol) polarization free energy of solvation -72.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds