Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46813 * 239.99730 * 3 2 1 5 5 H 1.48494 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 119.99874 * 3 2 1 7 7 C 1.38641 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99365 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.35674 * 117.00132 * 185.06183 * 9 7 2 11 11 C 1.38742 * 120.13694 * 354.39925 * 10 9 7 12 12 C 1.38123 * 120.05394 * 180.28230 * 11 10 9 13 13 C 1.38439 * 120.32555 * 359.73936 * 12 11 10 14 14 C 1.38021 * 120.26889 * 0.02562 * 13 12 11 15 15 C 1.39293 * 119.94508 * 359.97438 * 14 13 12 16 16 C 1.48264 * 120.16013 * 179.97438 * 15 14 13 17 17 C 1.39251 * 120.45467 * 129.71955 * 16 15 14 18 18 N 1.31805 * 120.69808 * 179.73045 * 17 16 15 19 19 C 1.32434 * 121.76517 * 0.58205 * 18 17 16 20 20 N 1.39000 * 119.57315 * 179.70370 * 19 18 17 21 21 C 1.39307 * 120.85430 * 359.68470 * 19 18 17 22 22 Cl 1.73599 * 120.39916 * 180.02562 * 21 19 18 23 23 C 1.38171 * 119.20456 * 0.02562 * 21 19 18 24 24 H 0.97004 * 119.99794 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.97037 * 359.97438 * 11 10 9 26 26 H 1.07995 * 119.83647 * 179.76406 * 12 11 10 27 27 H 1.07992 * 119.86693 * 180.02562 * 13 12 11 28 28 H 1.08004 * 120.02302 * 179.97438 * 14 13 12 29 29 H 1.07996 * 119.64906 * 0.02562 * 17 16 15 30 30 H 0.97004 * 120.00382 * 179.97438 * 20 19 18 31 31 H 0.96999 * 120.00173 * 359.97438 * 20 19 18 32 32 H 1.08006 * 120.80649 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0696 -3.5036 0.1077 11 6 3.4555 -3.4404 0.0942 12 6 4.2018 -4.5980 0.1976 13 6 3.5741 -5.8257 0.3205 14 6 2.1962 -5.9037 0.3403 15 6 1.4326 -4.7434 0.2369 16 6 -0.0479 -4.8217 0.2570 17 6 -0.7860 -4.0092 1.1138 18 7 -2.1025 -4.0710 1.1320 19 6 -2.7719 -4.9072 0.3532 20 7 -4.1602 -4.9388 0.4140 21 6 -2.1027 -5.7552 -0.5264 22 17 -2.9922 -6.8462 -1.5425 23 6 -0.7226 -5.7175 -0.5805 24 1 -0.4850 0.8401 -0.0004 25 1 3.9511 -2.4856 -0.0022 26 1 5.2804 -4.5451 0.1828 27 1 4.1649 -6.7261 0.4013 28 1 1.7106 -6.8637 0.4360 29 1 -0.2746 -3.3177 1.7670 30 1 -4.6569 -5.5486 -0.1539 31 1 -4.6325 -4.3512 1.0243 32 1 -0.1775 -6.3638 -1.2527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245565186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = 26.853639 kcal Electronic energy + Delta-G solvation = -19924.087446 eV Core-core repulsion = 16683.024490 eV Total energy + Delta-G solvation = -3241.062956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98219 -38.84476 -36.47888 -36.32052 -34.57190 -32.35856 -32.11658 -30.62496 -29.10773 -27.43967 -25.41265 -23.32200 -23.01983 -21.37860 -20.69098 -18.01142 -17.40256 -17.29190 -17.00473 -15.71978 -14.90650 -14.71634 -14.54532 -14.31925 -14.03687 -13.74530 -13.55533 -13.45222 -12.70712 -12.59846 -12.20308 -11.79371 -11.72223 -11.43986 -11.04563 -10.94556 -10.86423 -10.75028 -10.52406 -10.35313 -9.46694 -9.21063 -9.12117 -8.87360 -8.28608 -7.55005 -7.01307 -6.47783 -4.07087 1.46955 1.58817 2.22916 2.32190 2.39816 3.11694 3.12580 3.15478 3.71492 3.93037 4.21515 4.54836 4.93189 5.04983 5.16370 5.24366 5.44269 5.54066 5.62323 5.76937 5.89926 6.06400 6.13732 6.23980 6.56515 6.64684 6.78167 6.90325 7.05148 7.19140 7.31765 7.35047 7.42029 7.65423 7.74778 7.94695 8.54193 8.96406 9.63447 10.68165 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.005793 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.931287 B = 4831.953654 C = 6380.236810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.166 6.166 10 C 0.163 3.837 11 C -0.232 4.232 12 C -0.069 4.069 13 C -0.214 4.214 14 C -0.061 4.061 15 C -0.125 4.125 16 C -0.107 4.107 17 C 0.196 3.804 18 N -0.523 5.523 19 C 0.405 3.595 20 N -0.852 5.852 21 C -0.160 4.160 22 Cl -0.081 7.081 23 C -0.024 4.024 24 H 0.271 0.729 25 H 0.129 0.871 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.166 0.834 30 H 0.405 0.595 31 H 0.404 0.596 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -10.061 0.165 10.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.472 4.472 8 H 0.109 0.891 9 O -0.068 6.068 10 C 0.108 3.892 11 C -0.251 4.251 12 C -0.088 4.088 13 C -0.233 4.233 14 C -0.079 4.079 15 C -0.127 4.127 16 C -0.112 4.112 17 C 0.038 3.962 18 N -0.240 5.240 19 C 0.168 3.832 20 N -0.396 5.396 21 C -0.194 4.194 22 Cl -0.052 7.052 23 C -0.050 4.050 24 H 0.081 0.919 25 H 0.147 0.853 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.183 0.817 30 H 0.236 0.764 31 H 0.233 0.767 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.173 -9.378 0.600 9.918 hybrid contribution 0.610 0.274 -0.796 1.040 sum -2.563 -9.103 -0.196 9.459 Atomic orbital electron populations 1.70043 1.05809 1.27867 1.44889 1.25267 0.95819 0.98737 0.96416 0.85814 0.78750 0.79903 0.79182 1.19559 1.20306 1.19457 1.21269 0.91802 0.80730 1.53416 0.89085 1.83962 1.34128 1.11263 1.77444 1.19316 0.90082 0.87432 0.92343 1.21114 0.93485 0.99139 1.11362 1.20823 0.98552 0.92373 0.97020 1.20517 0.94123 0.97020 1.11643 1.20710 0.93462 0.95907 0.97818 1.17548 0.90105 0.91295 1.13744 1.19261 0.93591 0.99094 0.99205 1.22742 0.87009 0.92780 0.93669 1.67340 1.10384 1.21416 1.24880 1.18061 0.86124 0.89409 0.89644 1.42183 1.02386 1.46968 1.48098 1.21005 0.92930 1.02450 1.02969 1.98299 1.75622 1.63262 1.68062 1.21278 0.90943 0.96587 0.96165 0.91899 0.85342 0.87442 0.87471 0.86946 0.81736 0.76428 0.76658 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.18 13.67 55.48 0.76 -23.42 16 2 C 0.04 1.14 5.49 -17.51 -0.10 1.05 16 3 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.40 -10.54 9.49 30.88 0.29 -10.24 16 8 H 0.09 2.24 5.21 -52.49 -0.27 1.97 16 9 O -0.17 -4.41 8.17 0.37 0.00 -4.41 16 10 C 0.16 3.73 6.57 -38.74 -0.25 3.48 16 11 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 12 C -0.07 -1.21 10.03 -39.55 -0.40 -1.61 16 13 C -0.21 -3.52 10.03 -39.59 -0.40 -3.92 16 14 C -0.06 -1.04 9.53 -39.27 -0.37 -1.42 16 15 C -0.12 -2.52 5.50 -104.73 -0.58 -3.09 16 16 C -0.11 -2.11 5.28 -104.75 -0.55 -2.66 16 17 C 0.20 4.09 9.97 -17.19 -0.17 3.92 16 18 N -0.52 -10.42 10.38 -12.12 -0.13 -10.54 16 19 C 0.41 7.02 7.74 -154.93 -1.20 5.82 16 20 N -0.85 -11.34 9.03 31.17 0.28 -11.05 16 21 C -0.16 -2.64 6.36 -39.21 -0.25 -2.89 16 22 Cl -0.08 -1.08 27.60 -51.86 -1.43 -2.51 16 23 C -0.02 -0.41 9.46 -38.95 -0.37 -0.78 16 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 26 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 1.65 8.05 -52.48 -0.42 1.22 16 29 H 0.17 3.63 7.73 -52.49 -0.41 3.22 16 30 H 0.41 4.51 7.47 -40.82 -0.30 4.21 16 31 H 0.40 4.83 8.95 -40.82 -0.37 4.46 16 32 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -29.43 299.86 -8.19 -37.63 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -2.47 Total: 12.32 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -4.71 Total: -17.49 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.91 Total: -45.01 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.43 Total: -2.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.43 -8.19 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245565186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.480 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds