Wall clock time and date at job start Tue Mar 31 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48504 * 109.46813 * 239.99730 * 3 2 1 5 5 H 1.48494 * 109.47313 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47011 * 119.99874 * 3 2 1 7 7 C 1.38641 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99365 * 179.97438 * 7 2 1 9 9 O 1.34801 * 120.00198 * 0.02562 * 7 2 1 10 10 C 1.35674 * 117.00132 * 185.06183 * 9 7 2 11 11 C 1.38742 * 120.13694 * 354.39925 * 10 9 7 12 12 C 1.38123 * 120.05394 * 180.28230 * 11 10 9 13 13 C 1.38439 * 120.32555 * 359.73936 * 12 11 10 14 14 C 1.38021 * 120.26889 * 0.02562 * 13 12 11 15 15 C 1.39293 * 119.94508 * 359.97438 * 14 13 12 16 16 C 1.48264 * 120.16013 * 179.97438 * 15 14 13 17 17 C 1.39251 * 120.45467 * 129.71955 * 16 15 14 18 18 N 1.31805 * 120.69808 * 179.73045 * 17 16 15 19 19 C 1.32434 * 121.76517 * 0.58205 * 18 17 16 20 20 N 1.39000 * 119.57315 * 179.70370 * 19 18 17 21 21 C 1.39307 * 120.85430 * 359.68470 * 19 18 17 22 22 Cl 1.73599 * 120.39916 * 180.02562 * 21 19 18 23 23 C 1.38171 * 119.20456 * 0.02562 * 21 19 18 24 24 H 0.97004 * 119.99794 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.97037 * 359.97438 * 11 10 9 26 26 H 1.07995 * 119.83647 * 179.76406 * 12 11 10 27 27 H 1.07992 * 119.86693 * 180.02562 * 13 12 11 28 28 H 1.08004 * 120.02302 * 179.97438 * 14 13 12 29 29 H 1.07996 * 119.64906 * 0.02562 * 17 16 15 30 30 H 0.97004 * 120.00382 * 179.97438 * 20 19 18 31 31 H 0.96999 * 120.00173 * 359.97438 * 20 19 18 32 32 H 1.08006 * 120.80649 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1034 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0696 -3.5036 0.1077 11 6 3.4555 -3.4404 0.0942 12 6 4.2018 -4.5980 0.1976 13 6 3.5741 -5.8257 0.3205 14 6 2.1962 -5.9037 0.3403 15 6 1.4326 -4.7434 0.2369 16 6 -0.0479 -4.8217 0.2570 17 6 -0.7860 -4.0092 1.1138 18 7 -2.1025 -4.0710 1.1320 19 6 -2.7719 -4.9072 0.3532 20 7 -4.1602 -4.9388 0.4140 21 6 -2.1027 -5.7552 -0.5264 22 17 -2.9922 -6.8462 -1.5425 23 6 -0.7226 -5.7175 -0.5805 24 1 -0.4850 0.8401 -0.0004 25 1 3.9511 -2.4856 -0.0022 26 1 5.2804 -4.5451 0.1828 27 1 4.1649 -6.7261 0.4013 28 1 1.7106 -6.8637 0.4360 29 1 -0.2746 -3.3177 1.7670 30 1 -4.6569 -5.5486 -0.1539 31 1 -4.6325 -4.3512 1.0243 32 1 -0.1775 -6.3638 -1.2527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245565186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:02 Heat of formation + Delta-G solvation = 8.854166 kcal Electronic energy + Delta-G solvation = -19924.867962 eV Core-core repulsion = 16683.024490 eV Total energy + Delta-G solvation = -3241.843472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44049 -40.41939 -38.07394 -37.58792 -35.88443 -34.24075 -33.55704 -32.03771 -30.63779 -28.90331 -27.29311 -24.77758 -24.44626 -22.96568 -22.15958 -19.75966 -18.92927 -18.69840 -18.38427 -17.22596 -16.35881 -16.33685 -16.02998 -15.80087 -15.48251 -15.30634 -15.17659 -14.90865 -14.29877 -14.10989 -13.63694 -13.50709 -13.05801 -12.98856 -12.53129 -12.41083 -12.30653 -12.17060 -12.12578 -11.73499 -11.17596 -10.75951 -10.61918 -10.54124 -9.71210 -9.06178 -8.49448 -8.40468 -6.07442 0.00808 0.17590 0.75337 0.85882 1.05640 1.36736 1.46747 1.51531 2.19595 2.47272 2.74917 2.92424 3.24779 3.52871 3.54763 3.80740 4.02197 4.19734 4.23763 4.37124 4.47199 4.62940 4.73985 4.77070 5.11104 5.13962 5.22295 5.30581 5.44830 5.72816 5.75988 5.82274 6.06290 6.19861 6.27378 6.46752 7.03382 7.21378 7.84029 8.79679 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.014268 B = 0.005793 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.931287 B = 4831.953654 C = 6380.236810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.017 4.017 3 Si 1.011 2.989 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.412 4.412 8 H 0.100 0.900 9 O -0.212 6.212 10 C 0.124 3.876 11 C -0.247 4.247 12 C -0.069 4.069 13 C -0.190 4.190 14 C -0.059 4.059 15 C -0.129 4.129 16 C -0.124 4.124 17 C 0.175 3.825 18 N -0.549 5.549 19 C 0.399 3.601 20 N -0.833 5.833 21 C -0.158 4.158 22 Cl -0.046 7.046 23 C -0.017 4.017 24 H 0.269 0.731 25 H 0.119 0.881 26 H 0.144 0.856 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.134 0.866 30 H 0.418 0.582 31 H 0.412 0.588 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.999 -12.833 -0.549 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.117 0.883 9 O -0.118 6.118 10 C 0.073 3.927 11 C -0.266 4.266 12 C -0.087 4.087 13 C -0.208 4.208 14 C -0.077 4.077 15 C -0.131 4.131 16 C -0.129 4.129 17 C 0.018 3.982 18 N -0.267 5.267 19 C 0.159 3.841 20 N -0.380 5.380 21 C -0.192 4.192 22 Cl -0.017 7.017 23 C -0.043 4.043 24 H 0.078 0.922 25 H 0.137 0.863 26 H 0.161 0.839 27 H 0.170 0.830 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.251 0.749 31 H 0.242 0.758 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.974 -12.212 -0.112 12.371 hybrid contribution 0.242 0.729 -0.588 0.968 sum -1.731 -11.483 -0.701 11.634 Atomic orbital electron populations 1.70208 1.07736 1.28423 1.48365 1.26420 0.96689 1.02341 0.96089 0.84752 0.77428 0.74946 0.79786 1.18414 1.20128 1.18257 1.21716 0.92418 0.81561 1.53156 0.88269 1.83952 1.35239 1.12032 1.80547 1.19907 0.91325 0.87553 0.93902 1.21259 0.92945 1.00332 1.12076 1.21235 1.00288 0.91524 0.95605 1.21098 0.94069 0.98126 1.07499 1.21149 0.94018 0.96110 0.96456 1.17903 0.90798 0.91396 1.13024 1.19284 0.93608 0.99979 0.99994 1.22380 0.87723 0.93374 0.94712 1.67227 1.10143 1.22863 1.26432 1.18314 0.87419 0.89012 0.89325 1.42148 1.00933 1.46892 1.47983 1.21061 0.93059 1.02398 1.02719 1.98311 1.74734 1.61834 1.66841 1.21489 0.91418 0.95923 0.95506 0.92235 0.86328 0.83874 0.83022 0.83567 0.84860 0.74925 0.75766 0.81915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.18 13.67 21.61 0.30 -54.88 16 2 C -0.02 -0.94 5.49 84.83 0.47 -0.48 16 3 Si 1.01 42.63 29.55 68.60 2.03 44.66 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.41 -23.26 9.49 67.92 0.64 -22.61 16 8 H 0.10 5.15 5.21 -2.91 -0.02 5.13 16 9 O -0.21 -12.10 8.17 -21.61 -0.18 -12.27 16 10 C 0.12 5.90 6.57 22.81 0.15 6.05 16 11 C -0.25 -10.25 9.16 22.36 0.20 -10.04 16 12 C -0.07 -2.19 10.03 22.29 0.22 -1.96 16 13 C -0.19 -5.37 10.03 22.27 0.22 -5.14 16 14 C -0.06 -1.86 9.53 22.47 0.21 -1.65 16 15 C -0.13 -5.22 5.50 -19.93 -0.11 -5.33 16 16 C -0.12 -4.97 5.28 -19.94 -0.11 -5.07 16 17 C 0.18 7.81 9.97 84.94 0.85 8.66 16 18 N -0.55 -22.78 10.38 -192.25 -1.99 -24.77 16 19 C 0.40 13.70 7.74 133.10 1.03 14.73 16 20 N -0.83 -21.23 9.03 -55.31 -0.50 -21.73 16 21 C -0.16 -5.01 6.36 22.51 0.14 -4.86 16 22 Cl -0.05 -1.10 27.60 -2.72 -0.08 -1.17 16 23 C -0.02 -0.58 9.46 22.68 0.21 -0.37 16 24 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 26 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 27 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 28 H 0.15 3.60 8.05 -2.91 -0.02 3.58 16 29 H 0.13 6.60 7.73 -2.91 -0.02 6.58 16 30 H 0.42 8.43 7.47 -92.71 -0.69 7.74 16 31 H 0.41 9.51 8.95 -92.71 -0.83 8.68 16 32 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -69.30 299.86 3.40 -65.90 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -0.32 Total: 32.34 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 4.15 Total: -28.07 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -2.20 Total: -101.38 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.18 Total: -12.27 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.17 kcal Total: -69.30 3.40 -65.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245565186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.756 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds