Wall clock time and date at job start Tue Mar 31 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31754 * 119.70113 * 2 1 4 4 C 1.31995 * 121.84115 * 180.29233 * 3 2 1 5 5 Cl 1.73596 * 119.49526 * 179.74854 * 4 3 2 6 6 C 1.38498 * 121.00371 * 359.72718 * 4 3 2 7 7 C 1.38322 * 119.28133 * 359.97438 * 6 4 3 8 8 C 1.39330 * 119.69433 * 179.75881 * 2 1 3 9 9 C 1.48277 * 120.52763 * 359.97438 * 8 2 1 10 10 C 1.39438 * 119.64685 * 132.20303 * 9 8 2 11 11 C 1.38223 * 119.14071 * 179.72486 * 10 9 8 12 12 C 1.39429 * 118.45568 * 0.51742 * 11 10 9 13 13 O 1.35713 * 120.38069 * 179.75841 * 12 11 10 14 14 C 1.34806 * 117.00407 * 5.11149 * 13 12 11 15 15 H 1.08001 * 120.00180 * 354.94301 * 14 13 12 16 16 C 1.38656 * 120.00044 * 174.93366 * 14 13 12 17 17 N 1.31560 * 120.00027 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99935 * 179.72929 * 16 14 13 19 19 H 1.48498 * 109.47226 * 270.27493 * 18 16 14 20 20 H 1.48497 * 109.47064 * 30.27908 * 18 16 14 21 21 H 1.48503 * 109.46893 * 150.27975 * 18 16 14 22 22 C 1.38950 * 119.22697 * 359.48272 * 12 11 10 23 23 N 1.31666 * 120.79051 * 0.25171 * 22 12 11 24 24 H 1.09004 * 109.46716 * 264.82835 * 1 2 3 25 25 H 1.08998 * 109.47130 * 24.82816 * 1 2 3 26 26 H 1.09002 * 109.47416 * 144.82902 * 1 2 3 27 27 H 1.08004 * 120.35623 * 180.02562 * 6 4 3 28 28 H 1.08007 * 120.84126 * 179.97438 * 7 6 4 29 29 H 1.07995 * 120.42618 * 0.02742 * 10 9 8 30 30 H 1.07999 * 120.76992 * 180.29348 * 11 10 9 31 31 H 0.96999 * 119.99914 * 359.72618 * 17 16 14 32 32 H 1.08000 * 119.60142 * 180.27440 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1444 0.0000 4 6 3.4788 1.1937 -0.0057 5 17 4.2765 2.7356 -0.0120 6 6 4.2360 0.0341 -0.0064 7 6 3.5958 -1.1920 -0.0004 8 6 2.1972 -1.2103 0.0051 9 6 1.4608 -2.4973 0.0111 10 6 1.8245 -3.5042 -0.8823 11 6 1.1346 -4.7019 -0.8638 12 6 0.0888 -4.8522 0.0460 13 8 -0.6178 -6.0098 0.0943 14 6 -0.1930 -7.0195 -0.6914 15 1 0.6228 -6.8606 -1.3810 16 6 -0.8033 -8.2621 -0.6140 17 7 -1.7972 -8.4557 0.2259 18 14 -0.2195 -9.6591 -1.7081 19 1 -0.9763 -9.6367 -2.9856 20 1 1.2296 -9.4961 -1.9882 21 1 -0.4480 -10.9552 -1.0202 22 6 -0.2176 -3.8051 0.9065 23 7 0.4631 -2.6788 0.8667 24 1 -0.3633 -0.0926 1.0235 25 1 -0.3633 0.9327 -0.4315 26 1 -0.3634 -0.8401 -0.5920 27 1 5.3148 0.0866 -0.0106 28 1 4.1615 -2.1121 -0.0011 29 1 2.6378 -3.3521 -1.5763 30 1 1.3973 -5.5013 -1.5408 31 1 -2.1005 -7.7302 0.7938 32 1 -1.0236 -3.9166 1.6166 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245773747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:25 Heat of formation + Delta-G solvation = 7.646056 kcal Electronic energy + Delta-G solvation = -19313.843442 eV Core-core repulsion = 16071.947582 eV Total energy + Delta-G solvation = -3241.895860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.84503 -40.98204 -39.14028 -37.69471 -34.66555 -34.26767 -33.82062 -33.03427 -30.48446 -28.63730 -27.12782 -25.14230 -24.52400 -23.33033 -22.78388 -20.47171 -19.04435 -18.16485 -17.96688 -17.46976 -17.29604 -16.08596 -15.85397 -15.74097 -15.62750 -15.32532 -14.91364 -14.43560 -14.35212 -14.21881 -13.87563 -13.73968 -13.13326 -12.93015 -12.62325 -12.51610 -12.43870 -12.33468 -11.92375 -11.82437 -11.08993 -10.89485 -10.82927 -10.65184 -10.47598 -9.98918 -9.12906 -8.99658 -6.30931 -0.45193 0.08179 0.26172 0.49073 0.73015 1.51181 1.62910 1.78095 2.30307 2.43574 2.76613 2.96495 3.09803 3.24712 3.34054 3.69903 3.73685 3.89093 3.97315 4.09871 4.20951 4.35868 4.47338 4.59694 4.70337 4.75169 4.85149 4.94348 5.08937 5.13501 5.19967 5.41156 5.43301 5.63814 6.13380 6.63422 6.74995 6.95248 7.46644 8.44256 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.042016 B = 0.003071 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.259834 B = 9115.571338 C = 9584.920223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.158 3.842 3 N -0.501 5.501 4 C 0.162 3.838 5 Cl -0.027 7.027 6 C -0.147 4.147 7 C -0.043 4.043 8 C -0.075 4.075 9 C 0.065 3.935 10 C -0.087 4.087 11 C -0.194 4.194 12 C 0.085 3.915 13 O -0.229 6.229 14 C -0.489 4.489 15 H 0.099 0.901 16 C -0.037 4.037 17 N -0.910 5.910 18 Si 1.145 2.855 19 H -0.265 1.265 20 H -0.255 1.255 21 H -0.276 1.276 22 C 0.028 3.972 23 N -0.429 5.429 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.181 0.819 28 H 0.173 0.827 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.265 0.735 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.225 14.370 -3.365 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.020 3.980 3 N -0.213 5.213 4 C -0.003 4.003 5 Cl 0.001 6.999 6 C -0.168 4.168 7 C -0.069 4.069 8 C -0.078 4.078 9 C -0.071 4.071 10 C -0.107 4.107 11 C -0.221 4.221 12 C 0.032 3.968 13 O -0.134 6.134 14 C -0.564 4.564 15 H 0.117 0.883 16 C -0.235 4.235 17 N -0.543 5.543 18 Si 0.961 3.039 19 H -0.190 1.190 20 H -0.179 1.179 21 H -0.201 1.201 22 C -0.133 4.133 23 N -0.138 5.138 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.198 0.802 28 H 0.190 0.810 29 H 0.181 0.819 30 H 0.160 0.840 31 H 0.074 0.926 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.116 14.279 -3.038 18.971 hybrid contribution 0.491 0.359 0.115 0.619 sum 12.607 14.638 -2.923 19.538 Atomic orbital electron populations 1.20620 0.87635 1.02749 1.03639 1.21349 0.97411 0.86091 0.93151 1.66772 1.09331 1.30236 1.14974 1.21987 0.89781 0.88493 1.00011 1.98396 1.76540 1.28509 1.96448 1.22018 1.03056 0.89686 1.02025 1.21967 0.92115 0.99571 0.93296 1.19334 0.94116 0.91581 1.02817 1.19257 0.96704 0.93977 0.97208 1.22018 0.99447 0.91065 0.98151 1.21693 0.98438 1.00007 1.01928 1.20851 0.92162 0.88291 0.95541 1.83649 1.49759 1.19471 1.60509 1.22693 1.22188 0.90626 1.20938 0.88318 1.28369 0.94349 1.00623 1.00172 1.70682 1.25638 1.36009 1.21960 0.82561 0.76834 0.71126 0.73392 1.19006 1.17866 1.20111 1.21899 1.02582 0.88224 1.00610 1.67568 1.05083 1.20931 1.20230 0.89701 0.90070 0.91588 0.80198 0.80965 0.81915 0.84001 0.92630 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 8.87 71.24 0.63 -1.76 16 2 C 0.16 4.44 6.81 42.83 0.29 4.74 16 3 N -0.50 -13.85 10.24 -173.96 -1.78 -15.63 16 4 C 0.16 3.72 7.27 84.73 0.62 4.33 16 5 Cl -0.03 -0.54 29.10 -2.72 -0.08 -0.62 16 6 C -0.15 -2.66 9.86 22.35 0.22 -2.44 16 7 C -0.04 -0.87 9.59 22.69 0.22 -0.65 16 8 C -0.08 -2.03 5.62 -19.95 -0.11 -2.14 16 9 C 0.07 2.07 5.48 41.98 0.23 2.30 16 10 C -0.09 -2.65 9.52 22.56 0.21 -2.44 16 11 C -0.19 -7.40 9.25 22.55 0.21 -7.19 16 12 C 0.09 3.80 6.67 22.73 0.15 3.95 16 13 O -0.23 -12.32 9.16 -22.09 -0.20 -12.52 16 14 C -0.49 -25.96 9.49 67.92 0.64 -25.31 16 15 H 0.10 4.76 5.25 -2.91 -0.02 4.74 16 16 C -0.04 -1.97 5.49 84.83 0.47 -1.50 16 17 N -0.91 -53.44 13.70 21.61 0.30 -53.14 16 18 Si 1.15 44.25 29.92 68.60 2.05 46.30 16 19 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 20 H -0.25 -8.62 7.11 99.48 0.71 -7.92 16 21 H -0.28 -10.66 7.11 99.48 0.71 -9.96 16 22 C 0.03 1.13 11.14 84.89 0.95 2.07 16 23 N -0.43 -15.37 8.75 -184.33 -1.61 -16.99 16 24 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.91 6.99 -2.39 -0.02 1.89 16 27 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.17 2.52 8.03 -2.91 -0.02 2.50 16 29 H 0.16 3.61 8.00 -2.91 -0.02 3.59 16 30 H 0.14 5.32 5.75 -2.91 -0.02 5.31 16 31 H 0.26 16.16 7.97 -92.71 -0.74 15.42 16 32 H 0.16 5.94 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -64.46 301.64 4.60 -59.86 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.20 Total: 18.79 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 4.73 Total: -26.05 kcal Atomic # 7 Polarization: -82.66 SS G_CDS: -3.10 Total: -85.76 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.20 Total: -12.52 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.05 Total: 46.30 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -64.46 4.60 -59.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245773747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.503 kcal (2) G-P(sol) polarization free energy of solvation -64.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds