Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35749 * 117.00157 * 2 1 4 4 C 1.38594 * 120.13446 * 0.02562 * 3 2 1 5 5 C 1.38149 * 120.10458 * 179.97438 * 4 3 2 6 6 C 1.38663 * 120.38463 * 0.02562 * 5 4 3 7 7 Cl 1.73599 * 119.86774 * 179.97438 * 6 5 4 8 8 C 1.37912 * 120.27017 * 0.02562 * 6 5 4 9 9 C 1.39743 * 119.88128 * 359.70803 * 8 6 5 10 10 C 1.47606 * 120.18479 * 180.32121 * 9 8 6 11 11 N 1.33037 * 120.54872 * 230.13236 * 10 9 8 12 12 C 1.31903 * 120.03228 * 179.74371 * 11 10 9 13 13 C 1.39028 * 121.21926 * 0.56770 * 12 11 10 14 14 N 1.31520 * 121.14384 * 359.68319 * 13 12 11 15 15 C 1.34091 * 119.85881 * 0.03373 * 14 13 12 16 16 C 1.40726 * 120.57616 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99621 * 188.21914 * 16 15 14 18 18 C 1.40160 * 120.00067 * 8.21315 * 16 15 14 19 19 N 1.30689 * 120.00100 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99678 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47349 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47374 * 120.00418 * 20 18 16 23 23 H 1.48510 * 109.47138 * 240.00250 * 20 18 16 24 24 H 1.09000 * 109.46950 * 59.99638 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00427 * 1 2 3 26 26 H 1.08990 * 109.47158 * 179.97438 * 1 2 3 27 27 H 1.07997 * 119.94410 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.80868 * 180.02562 * 5 4 3 29 29 H 1.07992 * 120.05751 * 180.02562 * 8 6 5 30 30 H 1.07998 * 119.38927 * 180.25519 * 12 11 10 31 31 H 1.08000 * 119.42616 * 179.72024 * 13 12 11 32 32 H 0.96997 * 119.99687 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.2932 2.3737 0.0005 5 6 1.9211 3.6042 0.0011 6 6 3.3054 3.6853 0.0005 7 17 4.0803 5.2387 0.0005 8 6 4.0690 2.5370 -0.0011 9 6 3.4456 1.2863 0.0040 10 6 4.2564 0.0529 0.0095 11 7 4.0145 -0.9193 -0.8658 12 6 4.7487 -2.0151 -0.8551 13 6 5.7745 -2.1861 0.0675 14 7 6.0513 -1.2576 0.9569 15 6 5.3365 -0.1234 0.9824 16 6 5.6193 0.8798 1.9280 17 1 4.9586 1.7281 2.0291 18 6 6.7582 0.7780 2.7385 19 7 7.5579 -0.2484 2.6158 20 14 7.1331 2.1093 3.9940 21 1 6.0812 3.1560 3.9348 22 1 7.1629 1.5132 5.3538 23 1 8.4536 2.7177 3.6912 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2147 2.3186 0.0005 28 1 1.3304 4.5083 0.0019 29 1 5.1468 2.6041 -0.0011 30 1 4.5459 -2.7959 -1.5731 31 1 6.3547 -3.0969 0.0531 32 1 8.3463 -0.3186 3.1764 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245812290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = 1.816487 kcal Electronic energy + Delta-G solvation = -20314.459375 eV Core-core repulsion = 17072.310727 eV Total energy + Delta-G solvation = -3242.148649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24168 -40.19957 -38.50737 -37.04581 -35.99764 -34.25528 -33.11116 -30.94203 -30.50256 -28.05334 -27.95446 -25.11232 -23.89002 -22.90080 -22.35178 -19.55591 -19.03076 -17.93752 -17.66020 -17.11832 -16.73068 -16.43590 -16.12147 -15.73784 -15.26388 -14.90338 -14.50444 -14.40527 -14.16416 -13.69057 -13.30357 -13.18082 -13.06978 -12.84560 -12.71613 -12.51842 -12.10516 -11.98219 -11.73763 -11.62571 -11.48118 -11.46456 -11.03932 -10.11260 -9.52549 -9.30972 -8.87001 -8.41505 -6.64212 0.06367 0.34192 0.71142 1.18126 1.28934 1.37199 1.51676 1.53674 2.14658 2.50220 2.67430 2.76650 3.64840 3.74025 3.92441 4.06122 4.20105 4.23604 4.38082 4.44656 4.46963 4.58988 4.68489 4.73113 4.83904 5.03624 5.06273 5.09146 5.23898 5.33081 5.38584 5.73732 5.83099 6.09831 6.43527 6.58370 6.71895 7.37415 7.91859 8.22593 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.008497 C = 0.005504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.589183 B = 3294.460830 C = 5086.117393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.131 3.869 4 C -0.191 4.191 5 C -0.071 4.071 6 C -0.077 4.077 7 Cl -0.071 7.071 8 C -0.066 4.066 9 C -0.032 4.032 10 C -0.031 4.031 11 N -0.414 5.414 12 C -0.133 4.133 13 C 0.078 3.922 14 N -0.496 5.496 15 C 0.192 3.808 16 C -0.413 4.413 17 H 0.101 0.899 18 C 0.024 3.976 19 N -0.738 5.738 20 Si 0.980 3.020 21 H -0.248 1.248 22 H -0.262 1.262 23 H -0.260 1.260 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.167 0.833 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.052 7.433 -1.121 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.084 3.916 4 C -0.210 4.210 5 C -0.089 4.089 6 C -0.104 4.104 7 Cl -0.043 7.043 8 C -0.086 4.086 9 C -0.034 4.034 10 C -0.181 4.181 11 N -0.125 5.125 12 C -0.292 4.292 13 C -0.091 4.091 14 N -0.213 5.213 15 C 0.066 3.934 16 C -0.443 4.443 17 H 0.119 0.881 18 C -0.201 4.201 19 N -0.358 5.358 20 Si 0.798 3.202 21 H -0.171 1.171 22 H -0.186 1.186 23 H -0.184 1.184 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.188 0.812 28 H 0.185 0.815 29 H 0.141 0.859 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.672 7.173 -1.053 12.088 hybrid contribution 0.540 -0.004 0.328 0.632 sum -9.132 7.169 -0.725 11.633 Atomic orbital electron populations 1.23365 0.76793 1.05124 1.02551 1.86212 1.23090 1.26725 1.87800 1.19394 0.91094 0.85547 0.95585 1.21352 1.01388 0.90143 1.08111 1.21102 0.91407 0.98894 0.97532 1.20640 0.93464 0.85750 1.10521 1.98323 1.81677 1.26952 1.97321 1.20888 1.00097 0.89601 0.97990 1.17643 0.89914 0.91301 1.04569 1.21346 1.01670 0.95474 0.99568 1.67821 1.23856 1.00313 1.20535 1.22866 1.01195 0.98872 1.06311 1.23849 0.95088 0.98407 0.91739 1.69503 1.27632 1.01564 1.22626 1.20821 0.88642 0.91838 0.92065 1.20014 1.06600 1.04798 1.12907 0.88136 1.27123 0.94948 0.98708 0.99303 1.70121 1.08775 1.26196 1.30719 0.85171 0.79865 0.77985 0.77147 1.17104 1.18596 1.18386 0.90956 0.91186 0.87490 0.81157 0.81538 0.85895 0.82858 0.82775 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -12.26 9.52 -90.75 -0.86 -13.12 16 3 C 0.13 4.96 6.68 22.84 0.15 5.11 16 4 C -0.19 -5.33 9.03 22.33 0.20 -5.13 16 5 C -0.07 -1.89 9.81 22.35 0.22 -1.67 16 6 C -0.08 -2.52 6.31 22.29 0.14 -2.37 16 7 Cl -0.07 -2.06 28.94 -2.72 -0.08 -2.14 16 8 C -0.07 -2.66 7.52 22.56 0.17 -2.49 16 9 C -0.03 -1.43 5.18 -19.95 -0.10 -1.53 16 10 C -0.03 -1.62 6.19 43.57 0.27 -1.35 16 11 N -0.41 -21.25 9.89 -178.78 -1.77 -23.01 16 12 C -0.13 -6.35 11.17 84.87 0.95 -5.40 16 13 C 0.08 3.81 11.17 84.93 0.95 4.76 16 14 N -0.50 -27.85 8.12 -184.15 -1.50 -29.34 16 15 C 0.19 10.71 6.67 41.54 0.28 10.99 16 16 C -0.41 -21.66 7.91 23.35 0.18 -21.47 16 17 H 0.10 5.00 5.82 -2.91 -0.02 4.98 16 18 C 0.02 1.17 5.50 85.33 0.47 1.64 16 19 N -0.74 -38.23 11.54 21.86 0.25 -37.98 16 20 Si 0.98 36.45 29.56 68.60 2.03 38.48 16 21 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 22 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 23 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 24 H 0.07 1.35 7.66 -2.39 -0.02 1.33 16 25 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 26 H 0.11 2.15 8.14 -2.39 -0.02 2.14 16 27 H 0.17 3.28 6.30 -2.91 -0.02 3.26 16 28 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.12 5.34 7.40 -2.91 -0.02 5.32 16 30 H 0.15 6.16 8.06 -2.91 -0.02 6.14 16 31 H 0.16 6.41 8.06 -2.91 -0.02 6.39 16 32 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 Total: -1.00 -67.64 297.31 4.23 -63.41 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.17 Total: 21.15 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 4.99 Total: -17.44 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -3.01 Total: -90.33 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.86 Total: -13.12 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -67.64 4.23 -63.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245812290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.230 kcal (2) G-P(sol) polarization free energy of solvation -67.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds