Wall clock time and date at job start Tue Mar 31 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35576 * 116.99419 * 2 1 4 4 C 1.39151 * 119.50207 * 180.02562 * 3 2 1 5 5 C 1.38000 * 119.30727 * 179.70310 * 4 3 2 6 6 C 1.40275 * 118.36129 * 0.53675 * 5 4 3 7 7 C 1.47663 * 120.50870 * 179.73598 * 6 5 4 8 8 N 1.32644 * 119.99784 * 129.60827 * 7 6 5 9 9 C 1.31733 * 121.71028 * 179.97438 * 8 7 6 10 10 C 1.38875 * 121.51561 * 0.02562 * 9 8 7 11 11 C 1.36879 * 119.81146 * 359.97438 * 10 9 8 12 12 C 1.41113 * 118.40543 * 0.02562 * 11 10 9 13 13 C 1.40850 * 120.72175 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00159 * 150.98572 * 13 12 11 15 15 C 1.40045 * 119.99936 * 330.98129 * 13 12 11 16 16 N 1.30795 * 119.99849 * 162.60237 * 15 13 12 17 17 Si 1.86804 * 119.99814 * 342.59696 * 15 13 12 18 18 H 1.48500 * 109.46888 * 90.47121 * 17 15 13 19 19 H 1.48500 * 109.46757 * 210.46962 * 17 15 13 20 20 H 1.48497 * 109.47177 * 330.46867 * 17 15 13 21 21 C 1.39782 * 118.97603 * 359.46260 * 6 5 4 22 22 Cl 1.73597 * 119.71095 * 180.29465 * 21 6 5 23 23 N 1.31811 * 120.58045 * 0.27674 * 21 6 5 24 24 H 1.08998 * 109.47218 * 60.00244 * 1 2 3 25 25 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47415 * 299.99389 * 1 2 3 27 27 H 1.07995 * 120.34922 * 359.95241 * 4 3 2 28 28 H 1.07991 * 120.81954 * 180.29962 * 5 4 3 29 29 H 1.08001 * 119.24072 * 179.97438 * 9 8 7 30 30 H 1.07996 * 120.09323 * 179.97438 * 10 9 8 31 31 H 1.08008 * 120.79599 * 179.72599 * 11 10 9 32 32 H 0.97002 * 119.99232 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2081 0.0000 4 6 3.4346 1.2689 -0.0005 5 6 4.0568 2.5007 -0.0068 6 6 3.2554 3.6520 -0.0008 7 6 3.8714 4.9941 -0.0012 8 7 3.4782 5.9040 -0.8827 9 6 4.0042 7.1114 -0.9129 10 6 4.9989 7.4924 -0.0219 11 6 5.4514 6.6022 0.9142 12 6 4.8841 5.3104 0.9416 13 6 5.3135 4.3557 1.8839 14 1 4.6312 3.5932 2.2295 15 6 6.6253 4.3951 2.3727 16 7 6.9340 3.7535 3.4699 17 14 7.9342 5.3641 1.4576 18 1 7.9739 6.7549 1.9765 19 1 9.2578 4.7220 1.6606 20 1 7.6116 5.3855 0.0083 21 6 1.8649 3.5093 -0.0003 22 17 0.8551 4.9213 -0.0007 23 7 1.3137 2.3120 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 4.0205 0.3618 -0.0002 28 1 5.1340 2.5764 -0.0122 29 1 3.6543 7.8210 -1.6480 30 1 5.4143 8.4882 -0.0675 31 1 6.2275 6.8802 1.6121 32 1 7.8425 3.7812 3.8085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245870538.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:01 Heat of formation + Delta-G solvation = 18.116155 kcal Electronic energy + Delta-G solvation = -20230.511674 eV Core-core repulsion = 16989.069831 eV Total energy + Delta-G solvation = -3241.441842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23957 -38.76891 -37.43105 -35.87641 -34.20279 -32.58820 -31.57425 -31.17374 -28.95089 -27.07705 -25.59174 -23.55226 -22.73735 -21.80814 -20.71543 -18.15756 -17.65376 -16.86919 -16.57052 -15.81900 -15.53820 -14.81463 -14.56852 -14.16015 -14.04418 -13.60131 -13.33051 -12.88621 -12.68105 -12.58830 -12.27283 -11.84809 -11.66254 -11.53604 -11.42353 -10.98746 -10.62382 -10.50050 -10.37673 -10.09949 -9.64240 -9.43250 -9.36489 -8.62731 -8.34347 -8.14034 -7.50342 -7.24107 -4.75808 1.34896 1.62748 2.31403 2.39158 2.58314 2.90950 3.02081 3.11193 3.35705 3.72281 4.09014 4.34693 4.89821 5.13988 5.15276 5.33681 5.44019 5.51418 5.60985 5.72885 5.77683 5.90925 6.05085 6.12405 6.27807 6.51007 6.61818 6.73286 6.76168 6.98434 7.30928 7.38935 7.47262 7.64632 8.01581 8.04603 8.26997 8.43935 9.28376 9.75146 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.006757 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.523924 B = 4142.779166 C = 5368.389837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.309 6.309 3 C 0.316 3.684 4 C -0.188 4.188 5 C -0.006 4.006 6 C -0.041 4.041 7 C 0.031 3.969 8 N -0.426 5.426 9 C -0.037 4.037 10 C -0.116 4.116 11 C -0.209 4.209 12 C 0.067 3.933 13 C -0.424 4.424 14 H 0.099 0.901 15 C 0.084 3.916 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.245 1.245 21 C 0.215 3.785 22 Cl -0.023 7.023 23 N -0.543 5.543 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -2.822 -4.356 6.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.136 3.864 4 C -0.209 4.209 5 C -0.032 4.032 6 C -0.045 4.045 7 C -0.110 4.110 8 N -0.133 5.133 9 C -0.196 4.196 10 C -0.136 4.136 11 C -0.234 4.234 12 C 0.062 3.938 13 C -0.452 4.452 14 H 0.117 0.883 15 C -0.139 4.139 16 N -0.407 5.407 17 Si 0.737 3.263 18 H -0.191 1.191 19 H -0.213 1.213 20 H -0.168 1.168 21 C 0.052 3.948 22 Cl 0.005 6.995 23 N -0.268 5.268 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.174 0.826 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.287 -3.367 -4.723 7.848 hybrid contribution 1.773 1.029 0.558 2.125 sum -3.514 -2.338 -4.165 5.929 Atomic orbital electron populations 1.22785 0.77788 1.02356 1.02462 1.86191 1.22490 1.24540 1.88458 1.19526 0.89024 0.83434 0.94379 1.20975 0.91382 0.99598 1.08922 1.21610 1.01317 0.89326 0.90931 1.18893 0.90188 0.93761 1.01640 1.18967 1.02874 0.91646 0.97517 1.67116 1.23834 1.01483 1.20903 1.21687 1.00848 0.94062 1.02991 1.21388 0.97463 0.98746 0.96026 1.21197 1.05332 0.94260 1.02634 1.18363 0.91769 0.92447 0.91249 1.19485 0.97275 1.11872 1.16536 0.88272 1.26262 1.00378 0.93876 0.93363 1.69662 1.22258 1.32902 1.15848 0.86345 0.78137 0.79236 0.82541 1.19144 1.21311 1.16834 1.21357 0.88188 0.86694 0.98552 1.98373 1.69346 1.35508 1.96243 1.66331 1.41449 0.97827 1.21241 0.92491 0.89048 0.92427 0.83910 0.82650 0.85530 0.87731 0.86954 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.37 101.05 1.05 1.56 16 2 O -0.31 -4.86 10.47 -18.42 -0.19 -5.06 16 3 C 0.32 5.66 7.49 -16.98 -0.13 5.53 16 4 C -0.19 -3.23 10.02 -39.33 -0.39 -3.63 16 5 C -0.01 -0.11 8.19 -38.90 -0.32 -0.43 16 6 C -0.04 -0.87 5.06 -104.71 -0.53 -1.40 16 7 C 0.03 0.70 5.86 -82.26 -0.48 0.22 16 8 N -0.43 -9.55 8.98 -9.19 -0.08 -9.63 16 9 C -0.04 -0.75 11.16 -17.36 -0.19 -0.94 16 10 C -0.12 -2.35 10.03 -39.84 -0.40 -2.75 16 11 C -0.21 -4.67 7.33 -38.98 -0.29 -4.95 16 12 C 0.07 1.58 5.14 -106.41 -0.55 1.04 16 13 C -0.42 -10.28 7.64 -37.92 -0.29 -10.57 16 14 H 0.10 2.56 6.96 -52.49 -0.37 2.20 16 15 C 0.08 1.96 5.43 -17.32 -0.09 1.86 16 16 N -0.78 -18.82 13.93 55.55 0.77 -18.05 16 17 Si 0.91 18.70 24.54 -169.99 -4.17 14.53 16 18 H -0.27 -5.30 6.46 56.52 0.36 -4.94 16 19 H -0.29 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.25 -5.19 7.00 56.52 0.40 -4.79 16 21 C 0.21 4.44 7.30 -16.98 -0.12 4.32 16 22 Cl -0.02 -0.46 27.23 -51.86 -1.41 -1.87 16 23 N -0.54 -10.48 9.16 -10.04 -0.09 -10.57 16 24 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.16 2.90 7.40 -52.49 -0.39 2.51 16 29 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.11 2.45 4.49 -52.48 -0.24 2.22 16 32 H 0.29 6.29 8.30 -40.82 -0.34 5.96 16 LS Contribution 291.57 15.07 4.39 4.39 Total: -1.00 -26.51 291.57 -6.22 -32.73 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.70 Total: 3.67 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.74 Total: -10.14 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.60 Total: -38.26 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.19 Total: -5.06 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.17 Total: 14.53 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.41 Total: -1.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.51 -6.22 -32.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245870538.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.848 kcal (2) G-P(sol) polarization free energy of solvation -26.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds