Wall clock time and date at job start Tue Mar 31 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35576 * 116.99419 * 2 1 4 4 C 1.39151 * 119.50207 * 180.02562 * 3 2 1 5 5 C 1.38000 * 119.30727 * 179.70310 * 4 3 2 6 6 C 1.40275 * 118.36129 * 0.53675 * 5 4 3 7 7 C 1.47663 * 120.50870 * 179.73598 * 6 5 4 8 8 N 1.32644 * 119.99784 * 129.60827 * 7 6 5 9 9 C 1.31733 * 121.71028 * 179.97438 * 8 7 6 10 10 C 1.38875 * 121.51561 * 0.02562 * 9 8 7 11 11 C 1.36879 * 119.81146 * 359.97438 * 10 9 8 12 12 C 1.41113 * 118.40543 * 0.02562 * 11 10 9 13 13 C 1.40850 * 120.72175 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00159 * 150.98572 * 13 12 11 15 15 C 1.40045 * 119.99936 * 330.98129 * 13 12 11 16 16 N 1.30795 * 119.99849 * 162.60237 * 15 13 12 17 17 Si 1.86804 * 119.99814 * 342.59696 * 15 13 12 18 18 H 1.48500 * 109.46888 * 90.47121 * 17 15 13 19 19 H 1.48500 * 109.46757 * 210.46962 * 17 15 13 20 20 H 1.48497 * 109.47177 * 330.46867 * 17 15 13 21 21 C 1.39782 * 118.97603 * 359.46260 * 6 5 4 22 22 Cl 1.73597 * 119.71095 * 180.29465 * 21 6 5 23 23 N 1.31811 * 120.58045 * 0.27674 * 21 6 5 24 24 H 1.08998 * 109.47218 * 60.00244 * 1 2 3 25 25 H 1.09007 * 109.46930 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47415 * 299.99389 * 1 2 3 27 27 H 1.07995 * 120.34922 * 359.95241 * 4 3 2 28 28 H 1.07991 * 120.81954 * 180.29962 * 5 4 3 29 29 H 1.08001 * 119.24072 * 179.97438 * 9 8 7 30 30 H 1.07996 * 120.09323 * 179.97438 * 10 9 8 31 31 H 1.08008 * 120.79599 * 179.72599 * 11 10 9 32 32 H 0.97002 * 119.99232 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2081 0.0000 4 6 3.4346 1.2689 -0.0005 5 6 4.0568 2.5007 -0.0068 6 6 3.2554 3.6520 -0.0008 7 6 3.8714 4.9941 -0.0012 8 7 3.4782 5.9040 -0.8827 9 6 4.0042 7.1114 -0.9129 10 6 4.9989 7.4924 -0.0219 11 6 5.4514 6.6022 0.9142 12 6 4.8841 5.3104 0.9416 13 6 5.3135 4.3557 1.8839 14 1 4.6312 3.5932 2.2295 15 6 6.6253 4.3951 2.3727 16 7 6.9340 3.7535 3.4699 17 14 7.9342 5.3641 1.4576 18 1 7.9739 6.7549 1.9765 19 1 9.2578 4.7220 1.6606 20 1 7.6116 5.3855 0.0083 21 6 1.8649 3.5093 -0.0003 22 17 0.8551 4.9213 -0.0007 23 7 1.3137 2.3120 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 4.0205 0.3618 -0.0002 28 1 5.1340 2.5764 -0.0122 29 1 3.6543 7.8210 -1.6480 30 1 5.4143 8.4882 -0.0675 31 1 6.2275 6.8802 1.6121 32 1 7.8425 3.7812 3.8085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245870538.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:00 Heat of formation + Delta-G solvation = 1.240877 kcal Electronic energy + Delta-G solvation = -20231.243440 eV Core-core repulsion = 16989.069831 eV Total energy + Delta-G solvation = -3242.173609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.68621 -40.37576 -38.82256 -37.40615 -35.93239 -34.12804 -33.26043 -32.71187 -30.47482 -28.30929 -27.23971 -25.10772 -24.19866 -23.46931 -22.32880 -19.55036 -19.37125 -18.32477 -18.15848 -17.26531 -17.03886 -16.42794 -16.01904 -15.65482 -15.38582 -15.21583 -14.80159 -14.38092 -14.32707 -14.19691 -13.89068 -13.36209 -13.14890 -12.88124 -12.76761 -12.64599 -12.17832 -11.99209 -11.92890 -11.70725 -11.34278 -10.94061 -10.86980 -10.27446 -9.97882 -9.81057 -9.07194 -8.97610 -6.54800 -0.17775 0.12504 0.67652 0.82446 0.90599 1.26582 1.39999 1.48520 2.06860 2.09923 2.57245 2.63984 3.44307 3.47020 3.62108 3.98922 4.16211 4.31432 4.33159 4.43576 4.44865 4.49634 4.59881 4.67289 4.77312 4.88832 5.03852 5.13989 5.27851 5.36823 5.62764 5.71053 5.94196 6.10261 6.22218 6.52946 6.58694 6.66176 7.59834 8.07141 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.006757 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.523924 B = 4142.779166 C = 5368.389837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.316 3.684 4 C -0.180 4.180 5 C -0.010 4.010 6 C -0.067 4.067 7 C 0.023 3.977 8 N -0.444 5.444 9 C -0.031 4.031 10 C -0.114 4.114 11 C -0.222 4.222 12 C 0.050 3.950 13 C -0.445 4.445 14 H 0.069 0.931 15 C 0.057 3.943 16 N -0.822 5.822 17 Si 0.959 3.041 18 H -0.254 1.254 19 H -0.274 1.274 20 H -0.256 1.256 21 C 0.203 3.797 22 Cl -0.023 7.023 23 N -0.548 5.548 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.051 0.949 27 H 0.174 0.826 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.145 0.855 31 H 0.116 0.884 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 -2.442 -5.461 7.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.215 6.215 3 C 0.136 3.864 4 C -0.200 4.200 5 C -0.036 4.036 6 C -0.072 4.072 7 C -0.116 4.116 8 N -0.151 5.151 9 C -0.191 4.191 10 C -0.133 4.133 11 C -0.248 4.248 12 C 0.045 3.955 13 C -0.473 4.473 14 H 0.087 0.913 15 C -0.162 4.162 16 N -0.446 5.446 17 Si 0.782 3.218 18 H -0.179 1.179 19 H -0.201 1.201 20 H -0.180 1.180 21 C 0.040 3.960 22 Cl 0.006 6.994 23 N -0.274 5.274 24 H 0.074 0.926 25 H 0.149 0.851 26 H 0.070 0.930 27 H 0.192 0.808 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.162 0.838 31 H 0.134 0.866 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.192 -3.003 -5.820 8.357 hybrid contribution 1.558 0.892 0.802 1.966 sum -3.634 -2.111 -5.018 6.546 Atomic orbital electron populations 1.23091 0.75833 1.04896 1.02107 1.86211 1.24371 1.23028 1.87909 1.19805 0.89508 0.83819 0.93245 1.21266 0.91561 0.99967 1.07221 1.21673 1.01264 0.89703 0.90997 1.19030 0.90823 0.93914 1.03430 1.19210 1.02681 0.92450 0.97286 1.67208 1.24541 1.02274 1.21064 1.22379 0.99874 0.93872 1.02979 1.21779 0.96769 1.00087 0.94700 1.21402 1.05684 0.94172 1.03494 1.18541 0.92488 0.93042 0.91397 1.19291 0.97635 1.12219 1.18151 0.91315 1.26791 1.01341 0.94442 0.93632 1.69679 1.23212 1.34681 1.17036 0.85623 0.76585 0.78875 0.80697 1.17900 1.20052 1.17978 1.21399 0.88114 0.87273 0.99191 1.98356 1.69160 1.35591 1.96294 1.66359 1.41655 0.97774 1.21653 0.92609 0.85109 0.93003 0.80838 0.82810 0.82270 0.83765 0.86600 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.37 113.37 1.18 1.98 16 2 O -0.31 -9.12 10.47 -88.84 -0.93 -10.05 16 3 C 0.32 11.04 7.49 84.83 0.64 11.67 16 4 C -0.18 -6.06 10.02 22.43 0.22 -5.83 16 5 C -0.01 -0.41 8.19 22.71 0.19 -0.22 16 6 C -0.07 -2.93 5.06 -19.92 -0.10 -3.03 16 7 C 0.02 1.07 5.86 42.43 0.25 1.32 16 8 N -0.44 -19.43 8.98 -182.98 -1.64 -21.07 16 9 C -0.03 -1.21 11.16 84.86 0.95 -0.26 16 10 C -0.11 -4.28 10.03 22.10 0.22 -4.05 16 11 C -0.22 -9.63 7.33 22.66 0.17 -9.47 16 12 C 0.05 2.39 5.14 -21.02 -0.11 2.28 16 13 C -0.44 -22.23 7.64 23.35 0.18 -22.05 16 14 H 0.07 3.75 6.96 -2.91 -0.02 3.73 16 15 C 0.06 2.69 5.43 85.29 0.46 3.15 16 16 N -0.82 -40.26 13.93 21.85 0.30 -39.96 16 17 Si 0.96 37.93 24.54 68.60 1.68 39.62 16 18 H -0.25 -9.47 6.46 99.48 0.64 -8.83 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.26 -10.47 7.00 99.48 0.70 -9.78 16 21 C 0.20 8.44 7.30 85.07 0.62 9.06 16 22 Cl -0.02 -0.89 27.23 -2.72 -0.07 -0.96 16 23 N -0.55 -21.00 9.16 -298.53 -2.73 -23.73 16 24 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 25 H 0.13 1.93 8.14 -2.38 -0.02 1.92 16 26 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 27 H 0.17 4.65 8.06 -2.91 -0.02 4.62 16 28 H 0.15 5.92 7.40 -2.92 -0.02 5.90 16 29 H 0.16 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.12 4.88 4.49 -2.91 -0.01 4.87 16 32 H 0.30 13.10 8.30 -92.71 -0.77 12.33 16 Total: -1.00 -57.19 291.57 2.56 -54.63 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.09 Total: 16.97 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.86 Total: -15.45 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -4.07 Total: -84.76 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.93 Total: -10.05 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 1.68 Total: 39.62 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.07 Total: -0.96 kcal Total: -57.19 2.56 -54.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245870538.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.872 kcal (2) G-P(sol) polarization free energy of solvation -57.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds