Wall clock time and date at job start Tue Mar 31 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35582 * 117.00143 * 2 1 4 4 C 1.39133 * 119.51673 * 180.02562 * 3 2 1 5 5 C 1.38011 * 119.29947 * 180.02562 * 4 3 2 6 6 C 1.40202 * 118.37731 * 359.97438 * 5 4 3 7 7 C 1.47820 * 120.51096 * 179.97438 * 6 5 4 8 8 C 1.39977 * 119.45196 * 312.69195 * 7 6 5 9 9 C 1.36555 * 119.46320 * 180.02562 * 8 7 6 10 10 C 1.41332 * 118.41861 * 359.97438 * 9 8 7 11 11 C 1.41031 * 120.54953 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00247 * 150.39223 * 11 10 9 13 13 C 1.39987 * 119.99538 * 330.39131 * 11 10 9 14 14 N 1.30816 * 120.00301 * 345.02726 * 13 11 10 15 15 Si 1.86807 * 119.99848 * 165.02144 * 13 11 10 16 16 H 1.48499 * 109.47112 * 90.00314 * 15 13 11 17 17 H 1.48501 * 109.46975 * 209.99965 * 15 13 11 18 18 H 1.48500 * 109.47026 * 330.00107 * 15 13 11 19 19 C 1.40951 * 118.90860 * 359.97438 * 10 9 8 20 20 N 1.31265 * 120.40225 * 359.73112 * 19 10 9 21 21 C 1.39720 * 118.98491 * 0.02562 * 6 5 4 22 22 Cl 1.73592 * 119.70623 * 180.02562 * 21 6 5 23 23 N 1.31822 * 120.58521 * 0.02562 * 21 6 5 24 24 H 1.09007 * 109.46869 * 300.00272 * 1 2 3 25 25 H 1.08999 * 109.46962 * 60.00215 * 1 2 3 26 26 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.34589 * 0.02562 * 4 3 2 28 28 H 1.08007 * 120.81463 * 179.97438 * 5 4 3 29 29 H 1.07996 * 120.27466 * 0.02562 * 8 7 6 30 30 H 1.07998 * 120.78997 * 180.02562 * 9 8 7 31 31 H 0.96999 * 120.00108 * 180.02562 * 14 13 11 32 32 H 1.07998 * 119.79847 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 3.4345 1.2691 -0.0005 5 6 4.0565 2.5011 0.0000 6 6 3.2555 3.6519 0.0005 7 6 3.8721 4.9953 0.0017 8 6 4.9100 5.2755 0.8981 9 6 5.4793 6.5167 0.8998 10 6 4.9944 7.4804 -0.0133 11 6 5.5493 8.7764 -0.0498 12 1 5.5580 9.3343 -0.9744 13 6 6.0888 9.3397 1.1127 14 7 5.8258 8.8096 2.2793 15 14 7.1847 10.8482 0.9978 16 1 6.3510 12.0737 1.0891 17 1 8.1660 10.8331 2.1123 18 1 7.9080 10.8370 -0.2990 19 6 3.9469 7.1249 -0.8868 20 7 3.4359 5.9162 -0.8541 21 6 1.8656 3.5094 0.0010 22 17 0.8561 4.9215 0.0010 23 7 1.3141 2.3120 0.0015 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0205 0.3619 -0.0014 28 1 5.1339 2.5770 0.0000 29 1 5.2577 4.5164 1.5830 30 1 6.2817 6.7560 1.5819 31 1 6.1994 9.2002 3.0848 32 1 3.5655 7.8499 -1.5906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245871155.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:03 Heat of formation + Delta-G solvation = -3.122422 kcal Electronic energy + Delta-G solvation = -19495.857238 eV Core-core repulsion = 16253.494422 eV Total energy + Delta-G solvation = -3242.362816 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.67282 -40.19829 -38.84547 -37.38352 -36.02480 -33.95851 -32.73447 -32.43298 -30.70758 -28.38696 -27.07083 -24.82721 -24.29671 -23.26253 -22.47443 -19.50254 -19.28492 -18.31325 -17.83069 -17.16397 -17.03460 -16.36810 -16.04137 -15.56330 -15.38366 -14.99995 -14.78886 -14.29007 -14.12285 -14.07610 -13.49987 -13.20907 -13.10525 -12.88218 -12.83619 -12.67743 -12.27690 -12.04835 -11.83274 -11.70338 -11.23407 -10.93784 -10.90181 -10.19635 -9.91956 -9.79352 -9.04470 -8.70113 -6.44155 -0.17789 0.09490 0.81734 0.90242 1.12690 1.41048 1.50410 1.56223 2.09724 2.18419 2.52891 2.75066 3.42020 3.62628 3.64891 3.96653 4.13319 4.31940 4.35000 4.42838 4.47263 4.69476 4.74347 4.77888 4.82934 5.02309 5.12169 5.19324 5.26910 5.37760 5.76382 5.91853 5.99312 6.10698 6.47586 6.56979 6.72511 6.77015 7.69907 8.22184 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.036408 B = 0.003800 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.881391 B = 7366.010283 C = 7779.697332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.307 6.307 3 C 0.311 3.689 4 C -0.167 4.167 5 C -0.026 4.026 6 C -0.075 4.075 7 C 0.005 3.995 8 C -0.118 4.118 9 C -0.151 4.151 10 C 0.051 3.949 11 C -0.474 4.474 12 H 0.088 0.912 13 C 0.037 3.963 14 N -0.816 5.816 15 Si 0.986 3.014 16 H -0.263 1.263 17 H -0.266 1.266 18 H -0.256 1.256 19 C -0.031 4.031 20 N -0.446 5.446 21 C 0.202 3.798 22 Cl -0.029 7.029 23 N -0.550 5.550 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.131 0.869 27 H 0.184 0.816 28 H 0.174 0.826 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.294 0.706 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -11.807 -0.780 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.131 3.869 4 C -0.187 4.187 5 C -0.052 4.052 6 C -0.080 4.080 7 C -0.132 4.132 8 C -0.138 4.138 9 C -0.177 4.177 10 C 0.046 3.954 11 C -0.503 4.503 12 H 0.106 0.894 13 C -0.180 4.180 14 N -0.440 5.440 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.190 1.190 18 H -0.179 1.179 19 C -0.194 4.194 20 N -0.153 5.153 21 C 0.040 3.960 22 Cl -0.001 7.001 23 N -0.276 5.276 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.149 0.851 27 H 0.201 0.799 28 H 0.191 0.809 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.852 -12.237 -1.081 12.874 hybrid contribution 1.217 1.554 0.713 2.099 sum -2.634 -10.682 -0.368 11.008 Atomic orbital electron populations 1.23070 0.75975 1.04861 1.02003 1.86212 1.24193 1.23097 1.87883 1.19978 0.89971 0.83644 0.93311 1.21347 0.91105 1.00265 1.06011 1.21799 1.01630 0.89005 0.92735 1.19232 0.91034 0.93902 1.03825 1.18769 1.01132 0.92870 1.00415 1.21450 0.96643 0.97320 0.98435 1.21223 1.01727 0.92415 1.02290 1.18872 0.90443 0.94340 0.91711 1.19850 1.33546 0.99844 0.97107 0.89398 1.26834 0.95416 1.01922 0.93810 1.69817 1.34722 1.39720 0.99759 0.85125 0.77939 0.76720 0.79550 1.18808 1.19019 1.17920 1.22643 0.98184 0.93549 1.05030 1.67127 1.26393 1.01712 1.20062 1.21422 0.88479 0.87059 0.99055 1.98390 1.69519 1.35929 1.96221 1.66371 1.42098 0.97895 1.21276 0.92929 0.92975 0.85139 0.79864 0.80873 0.85489 0.86957 0.89560 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.37 113.37 1.18 1.87 16 2 O -0.31 -7.54 10.47 -88.91 -0.93 -8.48 16 3 C 0.31 9.00 7.49 84.83 0.64 9.64 16 4 C -0.17 -4.12 10.02 22.43 0.22 -3.90 16 5 C -0.03 -0.74 9.56 22.69 0.22 -0.52 16 6 C -0.08 -2.83 5.62 -19.91 -0.11 -2.95 16 7 C 0.00 0.20 5.90 41.92 0.25 0.45 16 8 C -0.12 -5.16 9.43 22.30 0.21 -4.95 16 9 C -0.15 -7.41 8.70 22.64 0.20 -7.21 16 10 C 0.05 2.60 5.53 -21.17 -0.12 2.49 16 11 C -0.47 -23.72 9.05 23.38 0.21 -23.51 16 12 H 0.09 4.18 7.89 -2.91 -0.02 4.15 16 13 C 0.04 1.73 5.18 85.27 0.44 2.18 16 14 N -0.82 -39.78 11.17 21.83 0.24 -39.54 16 15 Si 0.99 35.22 29.59 68.60 2.03 37.25 16 16 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 17 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 18 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 19 C -0.03 -1.51 10.97 85.44 0.94 -0.57 16 20 N -0.45 -21.25 8.77 -182.75 -1.60 -22.85 16 21 C 0.20 7.73 7.30 85.05 0.62 8.35 16 22 Cl -0.03 -1.16 27.08 -2.72 -0.07 -1.24 16 23 N -0.55 -18.82 9.16 -298.58 -2.73 -21.55 16 24 H 0.05 1.09 8.10 -2.38 -0.02 1.07 16 25 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 26 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.17 4.02 8.02 -2.91 -0.02 4.00 16 29 H 0.13 4.68 7.98 -2.91 -0.02 4.66 16 30 H 0.11 5.62 6.54 -2.91 -0.02 5.60 16 31 H 0.29 12.88 8.30 -92.71 -0.77 12.11 16 32 H 0.13 6.23 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -59.66 301.86 2.98 -56.68 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 1.16 Total: 18.37 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 4.89 Total: -18.65 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -4.09 Total: -83.94 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.93 Total: -8.48 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.24 kcal Total: -59.66 2.98 -56.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245871155.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.557 kcal (2) G-P(sol) polarization free energy of solvation -59.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds