Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35628 * 116.99874 * 2 1 4 4 C 1.39018 * 119.54127 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.27291 * 179.97438 * 4 3 2 6 6 C 1.39919 * 118.39146 * 359.97438 * 5 4 3 7 7 C 1.48275 * 120.48187 * 180.29521 * 6 5 4 8 8 C 1.38959 * 119.61953 * 312.14605 * 7 6 5 9 9 C 1.40821 * 118.76033 * 179.73701 * 8 7 6 10 10 C 1.41528 * 120.98864 * 180.25714 * 9 8 7 11 11 H 1.08001 * 119.99925 * 333.36912 * 10 9 8 12 12 C 1.40039 * 120.00095 * 153.36572 * 10 9 8 13 13 N 1.30740 * 119.99801 * 160.33284 * 12 10 9 14 14 Si 1.86794 * 120.00303 * 340.34173 * 12 10 9 15 15 H 1.48493 * 109.47570 * 90.93878 * 14 12 10 16 16 H 1.48503 * 109.47106 * 210.94200 * 14 12 10 17 17 H 1.48505 * 109.46906 * 330.93604 * 14 12 10 18 18 C 1.41159 * 118.02720 * 0.52862 * 9 8 7 19 19 C 1.37708 * 119.08673 * 359.73087 * 18 9 8 20 20 N 1.31943 * 121.16281 * 0.02562 * 19 18 9 21 21 C 1.39385 * 119.03262 * 0.02562 * 6 5 4 22 22 Cl 1.73598 * 119.68642 * 180.02562 * 21 6 5 23 23 N 1.31896 * 120.62938 * 359.97438 * 21 6 5 24 24 H 1.08991 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46741 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.47057 * 59.99541 * 1 2 3 27 27 H 1.08005 * 120.35978 * 359.97438 * 4 3 2 28 28 H 1.07999 * 120.80591 * 180.02562 * 5 4 3 29 29 H 1.07994 * 120.61942 * 359.97438 * 8 7 6 30 30 H 0.97003 * 119.99849 * 180.02562 * 13 12 10 31 31 H 1.08003 * 120.46081 * 179.71083 * 18 9 8 32 32 H 1.08005 * 119.42165 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 3.4336 1.2701 -0.0005 5 6 4.0549 2.5039 -0.0011 6 6 3.2548 3.6518 -0.0016 7 6 3.8730 4.9995 -0.0088 8 6 4.8999 5.2888 0.8816 9 6 5.4777 6.5728 0.8554 10 6 6.5299 6.9164 1.7373 11 1 6.6243 6.4121 2.6877 12 6 7.4485 7.9103 1.3777 13 7 8.1667 8.5002 2.2973 14 14 7.6477 8.3935 -0.4156 15 1 6.7224 9.5107 -0.7330 16 1 9.0474 8.8256 -0.6594 17 1 7.3317 7.2282 -1.2802 18 6 4.9725 7.5087 -0.0727 19 6 3.9480 7.1326 -0.9125 20 7 3.4348 5.9181 -0.8621 21 6 1.8682 3.5098 -0.0010 22 17 0.8593 4.9226 -0.0023 23 7 1.3153 2.3124 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0202 0.3633 -0.0005 28 1 5.1322 2.5807 -0.0019 29 1 5.2508 4.5418 1.5780 30 1 8.8028 9.1889 2.0482 31 1 5.3836 8.5062 -0.1234 32 1 3.5576 7.8443 -1.6250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245872345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = 17.167123 kcal Electronic energy + Delta-G solvation = -19626.035322 eV Core-core repulsion = 16384.552327 eV Total energy + Delta-G solvation = -3241.482995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59064 -38.78194 -37.71686 -36.13809 -34.19659 -32.83230 -31.66301 -31.17874 -28.80006 -27.16412 -26.04025 -23.70978 -23.31795 -21.55211 -20.91466 -18.47056 -17.83151 -17.17371 -16.11203 -16.07834 -15.37870 -14.97430 -14.76894 -14.42192 -14.34258 -13.72215 -13.59387 -13.21373 -12.96113 -12.64304 -12.28062 -11.93215 -11.79936 -11.63702 -11.04299 -10.93173 -10.80806 -10.75754 -10.67016 -9.89644 -9.80640 -9.74721 -9.45417 -8.63605 -8.33929 -8.13367 -7.61296 -7.16386 -4.79670 0.99910 1.21460 2.08804 2.37658 2.54699 3.00608 3.05031 3.10690 3.19880 3.72064 3.82252 4.41607 4.52207 4.77514 5.00233 5.09483 5.23016 5.23847 5.33885 5.37517 5.54267 5.74706 5.85355 6.16743 6.27919 6.36941 6.48021 6.53955 6.78041 7.03873 7.07867 7.11996 7.55244 7.67688 7.81370 8.12247 8.35249 8.56123 9.24666 9.84522 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.004366 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.571846 B = 6412.344546 C = 6937.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.307 6.307 3 C 0.325 3.675 4 C -0.187 4.187 5 C -0.020 4.020 6 C -0.079 4.079 7 C 0.163 3.837 8 C -0.233 4.233 9 C 0.109 3.891 10 C -0.436 4.436 11 H 0.095 0.905 12 C 0.087 3.913 13 N -0.792 5.792 14 Si 0.918 3.082 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.247 1.247 18 C -0.290 4.290 19 C 0.122 3.878 20 N -0.551 5.551 21 C 0.233 3.767 22 Cl -0.007 7.007 23 N -0.541 5.541 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.110 0.890 30 H 0.289 0.711 31 H 0.111 0.889 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.925 -10.333 -4.194 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.214 6.214 3 C 0.146 3.854 4 C -0.208 4.208 5 C -0.046 4.046 6 C -0.083 4.083 7 C 0.031 3.969 8 C -0.256 4.256 9 C 0.101 3.899 10 C -0.466 4.466 11 H 0.113 0.887 12 C -0.135 4.135 13 N -0.415 5.415 14 Si 0.744 3.256 15 H -0.191 1.191 16 H -0.217 1.217 17 H -0.171 1.171 18 C -0.312 4.312 19 C -0.032 4.032 20 N -0.265 5.265 21 C 0.069 3.931 22 Cl 0.021 6.979 23 N -0.266 5.266 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.318 -10.616 -4.632 14.866 hybrid contribution 1.370 0.945 0.001 1.664 sum -7.948 -9.671 -4.631 13.347 Atomic orbital electron populations 1.22848 0.77311 1.02724 1.02668 1.86221 1.22878 1.24205 1.88090 1.19572 0.89101 0.83648 0.93041 1.20999 0.91585 0.99535 1.08667 1.21542 1.01006 0.89580 0.92457 1.19279 0.91106 0.94251 1.03684 1.18761 0.93450 0.90482 0.94211 1.21792 1.02157 0.97452 1.04163 1.17809 0.91726 0.90147 0.90175 1.19523 1.07779 1.15640 1.03650 0.88748 1.26222 0.94022 0.92806 1.00464 1.69655 1.18119 1.17740 1.36022 0.86264 0.76442 0.80730 0.82179 1.19124 1.21653 1.17073 1.22041 1.03791 1.00347 1.05053 1.21882 0.92971 0.92302 0.96046 1.67510 1.31606 1.02269 1.25121 1.21291 0.88352 0.87129 0.96288 1.98413 1.69042 1.34492 1.95916 1.66470 1.41403 0.97796 1.20977 0.88733 0.92250 0.92249 0.83461 0.82779 0.87232 0.89996 0.87157 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -3.98 10.47 -18.58 -0.19 -4.17 16 3 C 0.33 4.83 7.49 -17.06 -0.13 4.70 16 4 C -0.19 -2.51 10.02 -39.33 -0.39 -2.91 16 5 C -0.02 -0.30 9.58 -38.99 -0.37 -0.67 16 6 C -0.08 -1.45 5.62 -104.71 -0.59 -2.03 16 7 C 0.16 3.45 5.88 -83.05 -0.49 2.96 16 8 C -0.23 -5.16 9.31 -38.34 -0.36 -5.52 16 9 C 0.11 2.64 5.18 -106.56 -0.55 2.09 16 10 C -0.44 -11.12 9.63 -37.65 -0.36 -11.48 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 12 C 0.09 2.14 5.42 -17.34 -0.09 2.04 16 13 N -0.79 -19.87 13.92 55.55 0.77 -19.10 16 14 Si 0.92 19.66 24.57 -169.99 -4.18 15.48 16 15 H -0.27 -5.49 6.44 56.52 0.36 -5.13 16 16 H -0.29 -5.96 7.11 56.52 0.40 -5.55 16 17 H -0.25 -5.47 7.04 56.52 0.40 -5.07 16 18 C -0.29 -6.68 7.43 -38.67 -0.29 -6.96 16 19 C 0.12 2.63 11.15 -17.70 -0.20 2.43 16 20 N -0.55 -12.00 8.75 -9.95 -0.09 -12.09 16 21 C 0.23 4.20 7.29 -17.10 -0.12 4.07 16 22 Cl -0.01 -0.13 27.07 -51.86 -1.40 -1.54 16 23 N -0.54 -8.95 9.17 -10.15 -0.09 -9.04 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 27 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 28 H 0.15 2.03 8.03 -52.49 -0.42 1.61 16 29 H 0.11 2.25 8.00 -52.49 -0.42 1.83 16 30 H 0.29 6.53 8.29 -40.82 -0.34 6.19 16 31 H 0.11 2.50 4.42 -52.48 -0.23 2.27 16 32 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -27.53 296.19 -6.40 -33.93 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.78 Total: 1.88 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.90 Total: -9.82 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.59 Total: -40.22 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.18 Total: 15.48 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.40 Total: -1.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.53 -6.40 -33.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245872345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.098 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds