Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35628 * 116.99874 * 2 1 4 4 C 1.39018 * 119.54127 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.27291 * 179.97438 * 4 3 2 6 6 C 1.39919 * 118.39146 * 359.97438 * 5 4 3 7 7 C 1.48275 * 120.48187 * 180.29521 * 6 5 4 8 8 C 1.38959 * 119.61953 * 312.14605 * 7 6 5 9 9 C 1.40821 * 118.76033 * 179.73701 * 8 7 6 10 10 C 1.41528 * 120.98864 * 180.25714 * 9 8 7 11 11 H 1.08001 * 119.99925 * 333.36912 * 10 9 8 12 12 C 1.40039 * 120.00095 * 153.36572 * 10 9 8 13 13 N 1.30740 * 119.99801 * 160.33284 * 12 10 9 14 14 Si 1.86794 * 120.00303 * 340.34173 * 12 10 9 15 15 H 1.48493 * 109.47570 * 90.93878 * 14 12 10 16 16 H 1.48503 * 109.47106 * 210.94200 * 14 12 10 17 17 H 1.48505 * 109.46906 * 330.93604 * 14 12 10 18 18 C 1.41159 * 118.02720 * 0.52862 * 9 8 7 19 19 C 1.37708 * 119.08673 * 359.73087 * 18 9 8 20 20 N 1.31943 * 121.16281 * 0.02562 * 19 18 9 21 21 C 1.39385 * 119.03262 * 0.02562 * 6 5 4 22 22 Cl 1.73598 * 119.68642 * 180.02562 * 21 6 5 23 23 N 1.31896 * 120.62938 * 359.97438 * 21 6 5 24 24 H 1.08991 * 109.47276 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46741 * 299.99833 * 1 2 3 26 26 H 1.09001 * 109.47057 * 59.99541 * 1 2 3 27 27 H 1.08005 * 120.35978 * 359.97438 * 4 3 2 28 28 H 1.07999 * 120.80591 * 180.02562 * 5 4 3 29 29 H 1.07994 * 120.61942 * 359.97438 * 8 7 6 30 30 H 0.97003 * 119.99849 * 180.02562 * 13 12 10 31 31 H 1.08003 * 120.46081 * 179.71083 * 18 9 8 32 32 H 1.08005 * 119.42165 * 180.02562 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 3.4336 1.2701 -0.0005 5 6 4.0549 2.5039 -0.0011 6 6 3.2548 3.6518 -0.0016 7 6 3.8730 4.9995 -0.0088 8 6 4.8999 5.2888 0.8816 9 6 5.4777 6.5728 0.8554 10 6 6.5299 6.9164 1.7373 11 1 6.6243 6.4121 2.6877 12 6 7.4485 7.9103 1.3777 13 7 8.1667 8.5002 2.2973 14 14 7.6477 8.3935 -0.4156 15 1 6.7224 9.5107 -0.7330 16 1 9.0474 8.8256 -0.6594 17 1 7.3317 7.2282 -1.2802 18 6 4.9725 7.5087 -0.0727 19 6 3.9480 7.1326 -0.9125 20 7 3.4348 5.9181 -0.8621 21 6 1.8682 3.5098 -0.0010 22 17 0.8593 4.9226 -0.0023 23 7 1.3153 2.3124 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.0202 0.3633 -0.0005 28 1 5.1322 2.5807 -0.0019 29 1 5.2508 4.5418 1.5780 30 1 8.8028 9.1889 2.0482 31 1 5.3836 8.5062 -0.1234 32 1 3.5576 7.8443 -1.6250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245872345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = -0.574919 kcal Electronic energy + Delta-G solvation = -19626.804675 eV Core-core repulsion = 16384.552327 eV Total energy + Delta-G solvation = -3242.252348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79692 -40.36795 -38.93821 -37.46633 -35.99683 -34.19202 -33.31512 -32.63976 -30.21025 -28.17452 -27.86346 -25.10045 -24.55652 -23.14473 -22.57057 -19.64320 -19.50081 -18.39007 -17.81152 -17.15147 -16.97403 -16.46416 -16.15991 -16.07366 -15.43427 -15.09434 -14.99055 -14.73405 -14.35689 -14.31076 -13.68219 -13.40469 -12.93473 -12.84223 -12.78371 -12.64880 -12.44860 -12.12454 -11.90379 -11.67771 -11.23127 -11.04992 -10.99012 -10.19091 -10.04015 -9.82162 -9.11706 -9.00262 -6.70559 -0.31057 -0.00009 0.69055 0.75998 0.82504 1.27753 1.41981 1.48904 2.03086 2.08362 2.44350 2.64918 3.24308 3.43860 3.46936 3.82802 4.05161 4.20684 4.23671 4.42486 4.45228 4.55019 4.62200 4.70364 4.75638 4.77495 4.97980 5.10611 5.19072 5.29747 5.35564 5.71336 5.98914 6.05970 6.23163 6.47070 6.52608 6.67791 7.52350 8.06372 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.004366 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.571846 B = 6412.344546 C = 6937.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C 0.325 3.675 4 C -0.171 4.171 5 C -0.014 4.014 6 C -0.109 4.109 7 C 0.172 3.828 8 C -0.245 4.245 9 C 0.098 3.902 10 C -0.470 4.470 11 H 0.065 0.935 12 C 0.056 3.944 13 N -0.828 5.828 14 Si 0.968 3.032 15 H -0.251 1.251 16 H -0.275 1.275 17 H -0.258 1.258 18 C -0.302 4.302 19 C 0.122 3.878 20 N -0.552 5.552 21 C 0.222 3.778 22 Cl -0.019 7.019 23 N -0.550 5.550 24 H 0.131 0.869 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.186 0.814 28 H 0.172 0.828 29 H 0.118 0.882 30 H 0.299 0.701 31 H 0.114 0.886 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 -11.984 -5.775 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.145 3.855 4 C -0.191 4.191 5 C -0.040 4.040 6 C -0.113 4.113 7 C 0.039 3.961 8 C -0.268 4.268 9 C 0.090 3.910 10 C -0.500 4.500 11 H 0.083 0.917 12 C -0.163 4.163 13 N -0.453 5.453 14 Si 0.791 3.209 15 H -0.177 1.177 16 H -0.201 1.201 17 H -0.182 1.182 18 C -0.324 4.324 19 C -0.033 4.033 20 N -0.266 5.266 21 C 0.059 3.941 22 Cl 0.010 6.990 23 N -0.276 5.276 24 H 0.149 0.851 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.203 0.797 28 H 0.190 0.810 29 H 0.136 0.864 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.998 -12.274 -6.200 17.001 hybrid contribution 1.391 1.213 0.487 1.909 sum -8.606 -11.061 -5.712 15.134 Atomic orbital electron populations 1.23115 0.75702 1.05016 1.02218 1.86248 1.24430 1.22932 1.87522 1.19970 0.89900 0.83766 0.91848 1.21363 0.91276 1.00205 1.06245 1.21777 1.01721 0.89151 0.91340 1.19267 0.91600 0.93782 1.06686 1.19099 0.92516 0.91604 0.92868 1.21948 1.02872 0.97155 1.04788 1.17984 0.91486 0.91229 0.90327 1.19500 1.09816 1.17236 1.03482 0.91658 1.26842 0.93359 0.92431 1.03630 1.69669 1.19252 1.18833 1.37574 0.85500 0.77377 0.80321 0.77723 1.17662 1.20099 1.18226 1.22169 1.04521 1.00375 1.05361 1.22387 0.92125 0.92774 0.95980 1.67644 1.31397 1.02514 1.25053 1.21261 0.88161 0.87480 0.97221 1.98399 1.69300 1.35227 1.96061 1.66458 1.41816 0.97766 1.21590 0.85140 0.92721 0.92671 0.79718 0.81050 0.86397 0.88998 0.86871 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.38 113.37 1.18 1.77 16 2 O -0.30 -6.91 10.47 -89.41 -0.94 -7.85 16 3 C 0.32 8.73 7.49 84.81 0.64 9.36 16 4 C -0.17 -3.99 10.02 22.43 0.22 -3.76 16 5 C -0.01 -0.40 9.58 22.65 0.22 -0.18 16 6 C -0.11 -3.84 5.62 -19.92 -0.11 -3.95 16 7 C 0.17 7.13 5.88 41.84 0.25 7.38 16 8 C -0.25 -10.90 9.31 23.07 0.21 -10.69 16 9 C 0.10 4.77 5.18 -21.12 -0.11 4.66 16 10 C -0.47 -24.85 9.63 23.52 0.23 -24.62 16 11 H 0.07 3.69 8.06 -2.91 -0.02 3.67 16 12 C 0.06 2.80 5.42 85.29 0.46 3.26 16 13 N -0.83 -42.53 13.92 21.84 0.30 -42.22 16 14 Si 0.97 40.08 24.57 68.60 1.69 41.77 16 15 H -0.25 -9.78 6.44 99.48 0.64 -9.14 16 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.26 -11.07 7.04 99.48 0.70 -10.37 16 18 C -0.30 -13.72 7.43 22.86 0.17 -13.55 16 19 C 0.12 5.05 11.15 84.55 0.94 5.99 16 20 N -0.55 -23.35 8.75 -185.40 -1.62 -24.97 16 21 C 0.22 7.74 7.29 84.96 0.62 8.36 16 22 Cl -0.02 -0.66 27.07 -2.72 -0.07 -0.73 16 23 N -0.55 -17.26 9.17 -298.90 -2.74 -20.00 16 24 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 26 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 27 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.17 4.08 8.03 -2.91 -0.02 4.05 16 29 H 0.12 4.90 8.00 -2.91 -0.02 4.88 16 30 H 0.30 13.67 8.29 -92.71 -0.77 12.91 16 31 H 0.11 5.01 4.42 -2.91 -0.01 5.00 16 32 H 0.16 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -59.87 296.19 2.62 -57.25 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.09 Total: 12.73 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 4.91 Total: -15.97 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -4.06 Total: -87.20 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.94 Total: -7.85 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.69 Total: 41.77 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.07 Total: -0.73 kcal Total: -59.87 2.62 -57.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245872345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.675 kcal (2) G-P(sol) polarization free energy of solvation -59.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds