Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35650 * 116.99843 * 2 1 4 4 C 1.38982 * 119.54461 * 180.02562 * 3 2 1 5 5 C 1.38187 * 119.26819 * 180.02562 * 4 3 2 6 6 C 1.39862 * 118.38863 * 359.72510 * 5 4 3 7 7 C 1.48380 * 120.47908 * 180.26742 * 6 5 4 8 8 C 1.39733 * 120.41040 * 310.25229 * 7 6 5 9 9 N 1.31911 * 121.14673 * 179.97438 * 8 7 6 10 10 C 1.31525 * 122.12317 * 0.02615 * 9 8 7 11 11 C 1.40775 * 120.66528 * 359.97403 * 10 9 8 12 12 C 1.41441 * 120.59983 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99804 * 335.75270 * 12 11 10 14 14 C 1.39932 * 119.99810 * 155.75467 * 12 11 10 15 15 N 1.30824 * 120.00099 * 343.17024 * 14 12 11 16 16 Si 1.86796 * 119.99884 * 163.17561 * 14 12 11 17 17 H 1.48496 * 109.47435 * 89.99573 * 16 14 12 18 18 H 1.48504 * 109.47262 * 209.99673 * 16 14 12 19 19 H 1.48504 * 109.47211 * 329.99923 * 16 14 12 20 20 C 1.39146 * 120.41296 * 129.97408 * 7 6 5 21 21 C 1.39338 * 119.04607 * 0.51669 * 6 5 4 22 22 Cl 1.73593 * 119.68506 * 179.75498 * 21 6 5 23 23 N 1.31918 * 120.62776 * 359.47363 * 21 6 5 24 24 H 1.08995 * 109.47105 * 300.00292 * 1 2 3 25 25 H 1.08996 * 109.46574 * 60.00441 * 1 2 3 26 26 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.37044 * 0.02562 * 4 3 2 28 28 H 1.07992 * 120.80664 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.42672 * 359.97438 * 8 7 6 30 30 H 1.07997 * 119.66596 * 179.97438 * 10 9 8 31 31 H 0.96996 * 120.00155 * 180.02562 * 15 14 12 32 32 H 1.07997 * 120.95363 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4333 1.2704 -0.0005 5 6 4.0547 2.5047 0.0000 6 6 3.2547 3.6519 -0.0048 7 6 3.8732 5.0007 -0.0104 8 6 4.8757 5.3229 0.9080 9 7 5.4358 6.5172 0.9156 10 6 5.0844 7.4599 0.0685 11 6 4.0827 7.2248 -0.8923 12 6 3.7062 8.2394 -1.8031 13 1 3.8667 9.2774 -1.5517 14 6 3.1257 7.8982 -3.0297 15 7 3.2256 6.6751 -3.4830 16 14 2.2084 9.1893 -4.0201 17 1 3.1537 9.8719 -4.9396 18 1 1.1340 8.5360 -4.8103 19 1 1.6080 10.1864 -3.0978 20 6 3.4660 5.9585 -0.9341 21 6 1.8686 3.5101 0.0010 22 17 0.8599 4.9229 0.0016 23 7 1.3155 2.3125 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0202 0.3638 -0.0014 28 1 5.1319 2.5816 0.0000 29 1 5.1977 4.5813 1.6241 30 1 5.5691 8.4241 0.1104 31 1 2.8236 6.4387 -4.3335 32 1 2.6971 5.7387 -1.6598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245875401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = 13.502174 kcal Electronic energy + Delta-G solvation = -19888.361315 eV Core-core repulsion = 16646.719395 eV Total energy + Delta-G solvation = -3241.641919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50194 -38.57083 -37.60548 -36.12382 -34.15795 -32.94013 -31.64015 -30.38415 -28.68029 -26.99099 -25.70068 -23.57032 -23.09522 -21.64153 -20.68951 -18.39228 -17.51894 -17.02934 -16.01785 -15.83054 -15.29811 -15.08902 -14.80244 -14.49004 -14.28181 -13.61431 -13.33133 -13.04915 -12.49819 -12.21279 -11.96056 -11.82322 -11.64941 -11.53647 -11.34253 -11.14897 -10.76540 -10.64621 -10.61519 -10.05188 -9.70483 -9.66131 -9.42996 -8.65399 -8.23358 -7.85743 -7.46168 -6.91502 -4.55264 1.10185 1.31923 2.13405 2.54071 2.83980 2.99688 3.03127 3.12805 3.14382 3.81160 3.83316 4.50397 4.62314 4.99494 5.14379 5.17382 5.29058 5.31955 5.52166 5.56998 5.62161 5.88890 6.01918 6.27796 6.35272 6.52872 6.69217 6.86817 7.00917 7.10820 7.20690 7.56573 7.74745 7.79038 7.85724 8.33305 8.60751 8.62521 9.53769 9.99844 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.005551 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.133442 B = 5042.923337 C = 5912.795270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.318 3.682 4 C -0.184 4.184 5 C -0.027 4.027 6 C -0.070 4.070 7 C -0.097 4.097 8 C -0.019 4.019 9 N -0.469 5.469 10 C -0.015 4.015 11 C 0.061 3.939 12 C -0.448 4.448 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.788 5.788 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.099 4.099 21 C 0.213 3.787 22 Cl -0.014 7.014 23 N -0.536 5.536 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.145 0.855 28 H 0.152 0.848 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.284 0.716 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 -9.264 2.462 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.139 3.861 4 C -0.205 4.205 5 C -0.053 4.053 6 C -0.075 4.075 7 C -0.100 4.100 8 C -0.177 4.177 9 N -0.176 5.176 10 C -0.176 4.176 11 C 0.057 3.943 12 C -0.477 4.477 13 H 0.102 0.898 14 C -0.144 4.144 15 N -0.413 5.413 16 Si 0.732 3.268 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.125 4.125 21 C 0.051 3.949 22 Cl 0.015 6.985 23 N -0.262 5.262 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.711 -9.462 2.859 10.950 hybrid contribution -0.693 0.544 -1.277 1.552 sum -5.404 -8.919 1.582 10.548 Atomic orbital electron populations 1.22831 0.77428 1.02620 1.02631 1.86216 1.22777 1.24261 1.88312 1.19511 0.89075 0.83598 0.93900 1.21013 0.91598 0.99551 1.08310 1.21526 1.00858 0.89649 0.93241 1.19489 0.90887 0.95420 1.01666 1.19137 0.99932 0.91274 0.99660 1.21675 0.99743 0.94677 1.01579 1.66944 1.26303 1.01152 1.23179 1.22545 0.99257 0.97832 0.97988 1.18449 0.90254 0.93083 0.92537 1.19551 1.34199 0.94607 0.99353 0.89756 1.25948 0.94206 0.96242 0.97956 1.69761 1.33382 1.19557 1.18559 0.86287 0.79689 0.81124 0.79658 1.19228 1.19924 1.18225 1.21875 0.99942 0.92934 0.97743 1.21367 0.88444 0.87128 0.97980 1.98422 1.69450 1.34574 1.96070 1.66412 1.41462 0.97806 1.20490 0.92329 0.92283 0.88813 0.83678 0.83030 0.86265 0.85537 0.90472 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.49 16 2 O -0.31 -4.28 10.47 -18.65 -0.20 -4.47 16 3 C 0.32 5.03 7.49 -17.07 -0.13 4.90 16 4 C -0.18 -2.63 10.03 -39.32 -0.39 -3.02 16 5 C -0.03 -0.43 9.67 -38.99 -0.38 -0.81 16 6 C -0.07 -1.36 5.50 -104.70 -0.58 -1.93 16 7 C -0.10 -2.15 5.12 -104.83 -0.54 -2.68 16 8 C -0.02 -0.41 10.70 -16.96 -0.18 -0.59 16 9 N -0.47 -11.18 10.32 -12.28 -0.13 -11.31 16 10 C -0.02 -0.37 10.96 -16.72 -0.18 -0.56 16 11 C 0.06 1.55 5.59 -106.71 -0.60 0.95 16 12 C -0.45 -11.17 9.08 -37.73 -0.34 -11.51 16 13 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 14 C 0.08 1.79 5.19 -17.35 -0.09 1.70 16 15 N -0.79 -19.38 10.90 55.55 0.61 -18.78 16 16 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 C -0.10 -2.43 6.96 -38.23 -0.27 -2.70 16 21 C 0.21 4.09 7.26 -17.11 -0.12 3.96 16 22 Cl -0.01 -0.27 26.20 -51.86 -1.36 -1.63 16 23 N -0.54 -9.46 9.17 -10.17 -0.09 -9.56 16 24 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 25 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.12 2.31 8.04 -52.48 -0.42 1.89 16 30 H 0.13 2.85 8.06 -52.49 -0.42 2.42 16 31 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 32 H 0.14 3.41 5.38 -52.49 -0.28 3.13 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -27.57 300.03 -7.21 -34.78 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -2.79 Total: 4.42 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.75 Total: -10.79 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.39 Total: -39.64 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.36 Total: -1.63 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.57 -7.21 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245875401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.281 kcal (2) G-P(sol) polarization free energy of solvation -27.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds