Wall clock time and date at job start Tue Mar 31 2020 06:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35650 * 116.99843 * 2 1 4 4 C 1.38982 * 119.54461 * 180.02562 * 3 2 1 5 5 C 1.38187 * 119.26819 * 180.02562 * 4 3 2 6 6 C 1.39862 * 118.38863 * 359.72510 * 5 4 3 7 7 C 1.48380 * 120.47908 * 180.26742 * 6 5 4 8 8 C 1.39733 * 120.41040 * 310.25229 * 7 6 5 9 9 N 1.31911 * 121.14673 * 179.97438 * 8 7 6 10 10 C 1.31525 * 122.12317 * 0.02615 * 9 8 7 11 11 C 1.40775 * 120.66528 * 359.97403 * 10 9 8 12 12 C 1.41441 * 120.59983 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99804 * 335.75270 * 12 11 10 14 14 C 1.39932 * 119.99810 * 155.75467 * 12 11 10 15 15 N 1.30824 * 120.00099 * 343.17024 * 14 12 11 16 16 Si 1.86796 * 119.99884 * 163.17561 * 14 12 11 17 17 H 1.48496 * 109.47435 * 89.99573 * 16 14 12 18 18 H 1.48504 * 109.47262 * 209.99673 * 16 14 12 19 19 H 1.48504 * 109.47211 * 329.99923 * 16 14 12 20 20 C 1.39146 * 120.41296 * 129.97408 * 7 6 5 21 21 C 1.39338 * 119.04607 * 0.51669 * 6 5 4 22 22 Cl 1.73593 * 119.68506 * 179.75498 * 21 6 5 23 23 N 1.31918 * 120.62776 * 359.47363 * 21 6 5 24 24 H 1.08995 * 109.47105 * 300.00292 * 1 2 3 25 25 H 1.08996 * 109.46574 * 60.00441 * 1 2 3 26 26 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.37044 * 0.02562 * 4 3 2 28 28 H 1.07992 * 120.80664 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.42672 * 359.97438 * 8 7 6 30 30 H 1.07997 * 119.66596 * 179.97438 * 10 9 8 31 31 H 0.96996 * 120.00155 * 180.02562 * 15 14 12 32 32 H 1.07997 * 120.95363 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4333 1.2704 -0.0005 5 6 4.0547 2.5047 0.0000 6 6 3.2547 3.6519 -0.0048 7 6 3.8732 5.0007 -0.0104 8 6 4.8757 5.3229 0.9080 9 7 5.4358 6.5172 0.9156 10 6 5.0844 7.4599 0.0685 11 6 4.0827 7.2248 -0.8923 12 6 3.7062 8.2394 -1.8031 13 1 3.8667 9.2774 -1.5517 14 6 3.1257 7.8982 -3.0297 15 7 3.2256 6.6751 -3.4830 16 14 2.2084 9.1893 -4.0201 17 1 3.1537 9.8719 -4.9396 18 1 1.1340 8.5360 -4.8103 19 1 1.6080 10.1864 -3.0978 20 6 3.4660 5.9585 -0.9341 21 6 1.8686 3.5101 0.0010 22 17 0.8599 4.9229 0.0016 23 7 1.3155 2.3125 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0202 0.3638 -0.0014 28 1 5.1319 2.5816 0.0000 29 1 5.1977 4.5813 1.6241 30 1 5.5691 8.4241 0.1104 31 1 2.8236 6.4387 -4.3335 32 1 2.6971 5.7387 -1.6598 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245875401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:23 Heat of formation + Delta-G solvation = -3.297376 kcal Electronic energy + Delta-G solvation = -19889.089798 eV Core-core repulsion = 16646.719395 eV Total energy + Delta-G solvation = -3242.370402 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 290.056 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.77891 -40.19838 -38.93427 -37.54385 -35.95714 -34.40852 -33.01388 -32.19580 -30.10082 -28.09518 -27.52148 -25.01584 -24.41163 -23.37547 -22.33281 -19.56447 -19.25615 -18.35450 -17.57540 -17.16741 -17.00342 -16.59720 -16.19314 -16.07119 -15.41589 -14.92965 -14.83598 -14.38231 -14.19942 -13.79803 -13.47448 -13.31360 -13.14952 -12.93017 -12.82591 -12.72706 -12.25925 -12.18745 -11.96044 -11.72200 -11.20140 -11.05614 -11.00552 -10.16544 -10.05872 -9.65136 -9.04319 -8.69605 -6.43342 -0.26332 0.02483 0.72083 0.83669 1.08268 1.38382 1.48107 1.53876 2.03845 2.17453 2.50079 2.72608 3.34120 3.59030 3.68105 3.95562 4.08994 4.17426 4.28855 4.40266 4.44182 4.64482 4.69322 4.75604 4.84915 4.94893 5.14290 5.18323 5.23479 5.33357 5.77693 5.93476 5.99898 6.04997 6.45872 6.51377 6.77173 6.78357 7.70044 8.23890 Molecular weight = 290.06amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.005551 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.133442 B = 5042.923337 C = 5912.795270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.305 6.305 3 C 0.316 3.684 4 C -0.167 4.167 5 C -0.019 4.019 6 C -0.099 4.099 7 C -0.087 4.087 8 C -0.020 4.020 9 N -0.479 5.479 10 C -0.035 4.035 11 C 0.037 3.963 12 C -0.479 4.479 13 H 0.086 0.914 14 C 0.040 3.960 15 N -0.817 5.817 16 Si 0.976 3.024 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.257 1.257 20 C -0.116 4.116 21 C 0.200 3.800 22 Cl -0.031 7.031 23 N -0.548 5.548 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.131 0.869 27 H 0.186 0.814 28 H 0.176 0.824 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.290 0.710 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.405 -11.243 2.416 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.137 3.863 4 C -0.187 4.187 5 C -0.044 4.044 6 C -0.104 4.104 7 C -0.090 4.090 8 C -0.178 4.178 9 N -0.187 5.187 10 C -0.195 4.195 11 C 0.032 3.968 12 C -0.508 4.508 13 H 0.104 0.896 14 C -0.176 4.176 15 N -0.442 5.442 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.181 1.181 20 C -0.141 4.141 21 C 0.038 3.962 22 Cl -0.003 7.003 23 N -0.274 5.274 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.204 0.796 28 H 0.193 0.807 29 H 0.168 0.832 30 H 0.152 0.848 31 H 0.101 0.899 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.717 -11.449 2.824 12.700 hybrid contribution -0.709 0.908 -1.186 1.653 sum -5.426 -10.540 1.639 11.968 Atomic orbital electron populations 1.23092 0.75868 1.04966 1.02059 1.86242 1.24281 1.22943 1.87771 1.19951 0.89985 0.83665 0.92722 1.21412 0.91178 1.00368 1.05723 1.21798 1.01767 0.88982 0.91878 1.19457 0.91259 0.95078 1.04566 1.19305 0.99133 0.92296 0.98242 1.22203 0.99273 0.94643 1.01677 1.66975 1.26734 1.01750 1.23191 1.22692 0.99714 0.98565 0.98485 1.18762 0.90876 0.93918 0.93211 1.19807 1.35921 0.94743 1.00369 0.89598 1.26712 0.94280 0.98166 0.98469 1.69811 1.34010 1.21188 1.19195 0.85274 0.78463 0.78471 0.78121 1.18294 1.19321 1.18101 1.21839 1.00261 0.93508 0.98533 1.21330 0.88323 0.87318 0.99191 1.98408 1.69911 1.35691 1.96248 1.66378 1.42007 0.97805 1.21217 0.92702 0.93067 0.85056 0.79650 0.80710 0.83229 0.84796 0.89895 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.38 113.37 1.18 1.85 16 2 O -0.31 -7.51 10.47 -89.65 -0.94 -8.45 16 3 C 0.32 9.17 7.49 84.80 0.63 9.80 16 4 C -0.17 -4.13 10.03 22.44 0.22 -3.91 16 5 C -0.02 -0.56 9.67 22.65 0.22 -0.34 16 6 C -0.10 -3.72 5.50 -19.92 -0.11 -3.83 16 7 C -0.09 -3.84 5.12 -20.00 -0.10 -3.94 16 8 C -0.02 -0.85 10.70 85.04 0.91 0.06 16 9 N -0.48 -22.86 10.32 -192.75 -1.99 -24.85 16 10 C -0.03 -1.72 10.96 85.36 0.94 -0.79 16 11 C 0.04 1.91 5.59 -21.22 -0.12 1.79 16 12 C -0.48 -24.61 9.08 23.47 0.21 -24.40 16 13 H 0.09 4.20 7.90 -2.91 -0.02 4.18 16 14 C 0.04 1.93 5.19 85.25 0.44 2.37 16 15 N -0.82 -40.95 10.90 21.82 0.24 -40.71 16 16 Si 0.98 36.76 29.59 68.60 2.03 38.79 16 17 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 18 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 20 C -0.12 -5.79 6.96 23.14 0.16 -5.62 16 21 C 0.20 7.61 7.26 84.94 0.62 8.22 16 22 Cl -0.03 -1.23 26.20 -2.72 -0.07 -1.31 16 23 N -0.55 -18.70 9.17 -298.94 -2.74 -21.44 16 24 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 25 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 26 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.18 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.15 5.46 8.04 -2.91 -0.02 5.44 16 30 H 0.13 6.22 8.06 -2.91 -0.02 6.20 16 31 H 0.29 13.25 8.30 -92.71 -0.77 12.49 16 32 H 0.12 6.40 5.38 -2.91 -0.02 6.38 16 Total: -1.00 -60.47 300.03 2.89 -57.58 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.16 Total: 19.10 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: 5.20 Total: -18.72 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -4.49 Total: -86.99 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.94 Total: -8.45 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.31 kcal Total: -60.47 2.89 -57.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245875401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.285 kcal (2) G-P(sol) polarization free energy of solvation -60.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds